DoriC

RefSeq

NC_019051

DoriC accession number

pORI00000223

OriC length

2041 nt

OriC AT content

0.513

The location of oriC region

1..2041 nt

Browse in NCBI

OriC map

OriC sequences

CTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTTCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAACGCGCGAAATTCCTTAAGGAACGTACAGACGGCTTAAAAGCCTTTAAAAACGTTTTTAAGGGGTTTGTAGACAAGGTAAAGGATAAAACAGCACAATTCCAAGAAAAACACGATTTAGAACCTAAAAAGAACGAATTTGAACTAACTCATAACCGAGAGGTAAAAAAAGAACGAAGTCGAGATCAGGGAATGAGTTTATAAAATAAAAAAAGCACCTGAAAAGGTGTCTTTTTTTGATGGTTTTGAACTTGTTCTTTCTTATCTTGATACATATAGAAATAACGTCATTTTTATTTTAGTTGCTGAAAGGTGCGTTGAAGTGTTGGTATGTATGTGTTTTAAAGTATTGAAAACCCTTAAAATTGGTTGCACAGAAAAACCCCATCTGTTAAAGTTATAAGTGACTAAACAAATAACTAAATAG

AT-rich region

The information of repeat sequences

Motif SAGDTDBBCAGMSWGRWADSCGRANAGCGCSHRATDCGBWA

Start	P-value		Site
916	1.07e-15	CGAGCGCAGC	GAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAA	ACCGCCTCTC
1360	6.75e-15	CCCTTCCCAA	CAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTA	TTTTCTCCTT
591	1.11e-13	TTCCCGAAGG	GAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAA	CAGGAGAGCG
1593	1.19e-13	GCATGTGTCA	GAGGTTTTCACCGTCATCACCGAAACGCGCGAAATTCCTTA	AGGAACGTAC
1005	1.78e-13	GCTGGCACGA	CAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAA	TTAATGTGAG

Motif GCTACCAGBGG

Start	P-value		Site
225	6.43e-07	AAAAACCACC	GCTACCAGCGG	TGGTTTGTTT
651	1.45e-06	GCACGAGGGA	GCTTCCAGGGG	GAAACGCCTG
409	1.45e-06	ACCAGTGGCT	GCTGCCAGTGG	CGATAAGTCG
396	2.31e-06	TGCTAATCCT	GTTACCAGTGG	CTGCTGCCAG
1182	6.10e-06	ATTCGAGCTC	GGTACCCGGGG	ATCCTCTAGA

Motif GGGGGG

Start	P-value		Site
739	2.01e-04	ATGCTCGTCA	GGGGGG	CGGAGCCTAT
492	2.01e-04	CGGGCTGAAC	GGGGGG	TTCGTGCACA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000223	100.0	2041	0	0	1	2041	1	2041	0.0	3770
pORI00000097	100.0	1199	0	0	1	1199	1	1199	0.0	2215
pORI00000097	100.0	449	0	0	1176	1624	1696	2144	0.0	830
pORI00000222	99.915	1171	0	1	1	1170	1	1171	0.0	2156
pORI00000222	100.0	50	0	0	1439	1488	2301	2252	1.52e-19	94
pORI00000301	99.829	1171	1	1	1	1170	1	1171	0.0	2150
pORI00000224	100.0	1038	0	0	1	1038	1	1038	0.0	1917
pORI00000224	100.0	418	0	0	1624	2041	1359	1776	0.0	773
pORI00000224	100.0	232	0	0	1209	1440	1128	1359	0.0	429
pORI00000294	99.799	995	2	0	1	995	1310	316	0.0	1827
pORI00000292	99.799	995	2	0	1	995	1310	316	0.0	1827
pORI00000290	99.799	995	2	0	1	995	1301	307	0.0	1827
pORI00000092	99.306	1008	1	6	1	1008	1	1002	0.0	1818
pORI00000092	100.0	422	0	0	1203	1624	1587	2008	0.0	780
pORI00000092	99.677	310	0	1	895	1203	1007	1316	0.0	566
pORI00000239	99.894	946	1	0	1	946	1124	179	0.0	1742
pORI00000239	100.0	103	0	0	1386	1488	183	81	0.0	191
pORI00000306	93.898	803	32	9	148	946	1160	371	0.0	1195
pORI00000306	95.192	104	5	0	1488	1591	232	129	3.17997e-41	165
pORI00000320	92.839	796	32	15	151	944	103	875	0.0	1131
pORI00000320	94.118	51	3	0	1488	1538	1016	1066	4.26e-15	79
pORI00000312	92.839	796	32	15	151	944	103	875	0.0	1131
pORI00000312	94.118	51	3	0	1488	1538	1016	1066	4.26e-15	79
pORI00000112	91.349	786	41	17	164	946	974	1735	0.0	1055
pORI00000022	90.164	793	55	15	160	946	8	783	0.0	1011
pORI00000022	94.118	51	3	0	1488	1538	922	972	4.26e-15	79
pORI00000012	87.438	804	64	26	148	946	55	826	0.0	891
pORI00000012	92.157	102	7	1	1488	1589	964	1064	1.49e-34	143
pORI00000343	87.016	801	72	20	148	943	1013	240	0.0	874
pORI00000343	95.789	95	4	0	1488	1582	98	4	6.88e-38	154
pORI00000058	87.234	799	62	28	152	946	1	763	0.0	874
pORI00000058	94.161	137	8	0	1488	1624	901	1037	0.0	209
pORI00000315	93.478	552	23	6	396	946	971	1510	0.0	808
pORI00000315	95.05	101	5	0	1488	1588	1649	1749	1.48e-39	159
pORI00000315	91.262	103	9	0	1386	1488	1506	1608	5.36e-34	141
pORI00000309	93.091	550	23	9	398	946	271	806	0.0	791
pORI00000309	92.157	102	8	0	1488	1589	945	1046	4.14e-35	145
pORI00000308	92.727	550	25	9	398	946	271	806	0.0	780
pORI00000111	84.603	643	51	26	306	946	192	788	0.0	597
pORI00000111	94.118	51	3	0	1488	1538	926	976	4.26e-15	79
pORI00000488	99.237	262	2	0	1625	1886	888	1149	0.0	473
pORI00000008	81.283	561	81	22	152	700	1651	1103	0.0	433
pORI00000236	99.552	223	1	0	1819	2041	223	1	0.0	407
pORI00000094	81.148	488	56	25	279	763	1702	1248	0.0	359
pORI00000094	98.276	58	1	0	882	939	1165	1108	2.53e-22	102
pORI00000093	81.148	488	56	25	279	763	786	332	0.0	359
pORI00000093	98.276	58	1	0	882	939	249	192	2.53e-22	102
pORI00000086	83.375	397	43	19	388	782	753	378	0.0	346
pORI00000198	80.567	494	54	30	278	765	209	666	0.0	342
pORI00000043	83.505	388	41	17	396	780	348	715	0.0	340
pORI00000110	82.741	394	46	18	388	779	2372	2745	0.0	331
pORI00000110	100.0	57	0	0	883	939	2812	2868	1.95e-23	106
pORI00000060	77.259	642	92	40	160	791	2329	1732	0.0	327
pORI00000060	100.0	147	0	0	1	147	1	147	0.0	272
pORI00000060	92.453	106	8	0	1488	1593	1481	1376	2.47e-37	152
pORI00000060	100.0	34	0	0	115	148	3368	3335	1.19e-10	64
pORI00000244	83.243	370	40	16	396	763	448	797	0.0	320
pORI00000300	99.425	174	1	0	1868	2041	55	228	0.0	316
pORI00000061	82.188	393	47	17	396	786	372	743	0.0	316
pORI00000293	98.276	174	3	0	1868	2041	174	1	0.0	305
pORI00000291	98.276	174	3	0	1868	2041	174	1	0.0	305
pORI00000289	98.276	174	3	0	1868	2041	174	1	0.0	305
pORI00000056	82.385	369	46	15	396	763	208	558	0.0	303
pORI00000307	76.471	629	83	50	161	779	299	872	0.0	281
pORI00000307	100.0	57	0	0	883	939	939	995	1.95e-23	106
pORI00000116	76.471	629	83	50	161	779	299	872	0.0	281
pORI00000116	100.0	57	0	0	883	939	939	995	1.95e-23	106
pORI00000098	76.471	629	83	50	161	779	299	872	0.0	281
pORI00000098	100.0	57	0	0	883	939	939	995	1.95e-23	106
pORI00000095	76.471	629	83	50	161	779	299	872	0.0	281
pORI00000095	100.0	57	0	0	883	939	939	995	1.95e-23	106
pORI00000069	76.768	495	78	28	306	786	3232	3703	0.0	243
pORI00000240	94.949	99	5	0	1488	1586	1294	1392	1.91e-38	156
pORI00000240	81.818	110	15	4	837	946	1058	1162	7.08e-18	88
pORI00000240	86.441	59	5	1	722	780	1002	1057	4.29e-10	62
pORI00000238	92.453	106	8	0	1488	1593	1106	1211	2.47e-37	152
pORI00000284	85.034	147	10	5	628	763	349	204	1.93e-33	139
pORI00000234	85.034	147	10	5	628	763	349	204	1.93e-33	139
pORI00000210	85.034	147	10	5	628	763	349	204	1.93e-33	139
pORI00000209	85.034	147	10	5	628	763	349	204	1.93e-33	139
pORI00001057	95.082	61	3	0	883	943	760	700	1.18e-20	97
pORI00000947	95.082	61	3	0	883	943	782	722	1.18e-20	97
pORI00000921	89.474	76	8	0	868	943	264	339	1.18e-20	97
pORI00000702	95.082	61	3	0	883	943	760	700	1.18e-20	97
pORI00000446	89.474	76	8	0	868	943	264	339	1.18e-20	97
pORI00000072	95.082	61	3	0	883	943	588	528	1.18e-20	97
pORI00000031	89.474	76	8	0	868	943	459	534	1.18e-20	97
pORI00001164	96.491	57	2	0	883	939	874	818	4.23e-20	95
pORI00001144	90.278	72	7	0	868	939	236	307	4.23e-20	95
pORI00001062	96.491	57	2	0	883	939	648	592	4.23e-20	95
pORI00001056	96.491	57	2	0	883	939	874	818	4.23e-20	95
pORI00001020	90.278	72	7	0	868	939	236	307	4.23e-20	95
pORI00001011	96.491	57	2	0	883	939	874	818	4.23e-20	95
pORI00000834	96.491	57	2	0	883	939	874	818	4.23e-20	95
pORI00000280	93.333	45	1	2	1867	1910	651	694	3.32e-11	66