DoriC

RefSeq

NZ_CP019180

DoriC accession number

pORI00000921

OriC length

1038 nt

OriC AT content

0.6069

The location of oriC region

23857..24894 nt

Browse in NCBI

OriC map

OriC sequences

CGCTTTTTAGCGGCCTTGTTGCTGTGATCTGTTGCCATGATCCGGATAGAAGTTCAATTTTGATCAAAATTTCCTCAAGGCAACGACTGTTTTGTAAATACCCTCTAAAACGCGCTGTATCGCATTCTGAGTGATTTTTTCGATTTCGCATGGTTTTTAACTATGGTTGTATCGAACGAAGCGGCAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGATCTGAACTCTTCTGGTTTTGAGAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGAAGCGGAATAGCACAGGGATTACATCAGGCACTTACGCACAGTGGTTAAAAAGCGAGCATGTTGTTTTTATGTGTGGTTGTCCTGGTTCAGCGTGATCTGTCCTCCGGGTTTACGCAAAGTTATCCACAGGCACTGTGAATTTTTTGTTTTGAGCAGAGTTATCCACAGATTTTTTGTGTTTTTTTGCTTATTAAACTTCTTGTTTTTAAGATCTTAAATGTAGATCGGTAGATCTACTTTAAGATCTTTAACTTATTTTAACTTATTCTGCAAACATTGTGCCAAGTTTTTTATCAATAATTTCATTAAGATAGGTGTTGTTTTTTGTCGCCTCAAAATGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCACTGTAATTTTCATGAAAGGTGGATGGCTGCGCACTGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCATTTTTCTGTTTTTATTCAGATATTCGTATCTTTGTATCTTCATTTCTTTAGTTCTTTATAGTGCTCTAATTTAACGTATGACGTTAAAAGGTGGATGCCTGCGCATTTCTATCATATTGAATATAAATGATAAAAATTCTTTCATGTGATCCGAGTTTTGGTGGAAATCTATAAGGTGGATAAACCACTTTACACATTTCCGCTTTTGTGGTTATGATTTCACCATCAGAACTTAAAAAACACAGGTAATGT

AT-rich region

The information of repeat sequences

Motif GAAAGGTGGATGGGTACGCAC

Start	P-value		Site
745	9.75e-14	GCTGCGCACT	GAAAGGTGGATGGGTACGCAC	TGAAAGGTGG
690	9.75e-14	GGTACGCACT	GAAAGGTGGATGGGTACGCAC	TGTAATTTTC
668	9.75e-14	GCCTCAAAAT	GAAAGGTGGATGGGTACGCAC	TGAAAGGTGG
767	4.52e-13	GGTACGCACT	GAAAGGTGGATGGGTACGCAT	TTTTCTGTTT
723	5.14e-13	TAATTTTCAT	GAAAGGTGGATGGCTGCGCAC	TGAAAGGTGG

Motif CRVASTTAKCCRCAG

Start	P-value		Site
443	8.52e-09	CGGGTTTACG	CAAAGTTATCCACAG	GCACTGTGAA
482	2.63e-08	TTGTTTTGAG	CAGAGTTATCCACAG	ATTTTTTGTG
278	1.26e-07	AGAAAGGAGA	CACCGCTCGCCGCAG	CCGAACGACC
355	5.27e-07	GATTACATCA	GGCACTTACGCACAG	TGGTTAAAAA
173	7.29e-07	ATGGTTGTAT	CGAACGAAGCGGCAG	AAAGCGATTC

Motif YRTGATCYG

Start	P-value		Site
931	8.64e-06	AATTCTTTCA	TGTGATCCG	AGTTTTGGTG
419	8.64e-06	CCTGGTTCAG	CGTGATCTG	TCCTCCGGGT
36	1.06e-05	GATCTGTTGC	CATGATCCG	GATAGAAGTT
23	1.77e-05	GCCTTGTTGC	TGTGATCTG	TTGCCATGAT
243	3.41e-05	CAACGGATCG	TATGATCTG	AACTCTTCTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000921	100.0	1038	0	0	1	1038	1	1038	0.0	1917
pORI00000921	100.0	43	0	0	744	786	667	709	5.97e-16	81
pORI00000921	100.0	43	0	0	667	709	744	786	5.97e-16	81
pORI00000921	95.745	47	2	0	721	767	666	712	7.73e-15	77
pORI00000921	95.745	47	2	0	666	712	721	767	7.73e-15	77
pORI00001057	99.422	1038	6	0	1	1038	1038	1	0.0	1884
pORI00001057	100.0	43	0	0	667	709	295	253	5.97e-16	81
pORI00001057	94.0	50	3	0	666	715	318	269	7.73e-15	77
pORI00001057	97.674	43	1	0	744	786	372	330	2.78e-14	75
pORI00000947	97.363	1062	4	2	1	1038	1062	1	0.0	1784
pORI00000947	97.959	49	1	0	667	715	317	269	1.28e-17	86
pORI00000947	100.0	43	0	0	667	709	295	253	5.97e-16	81
pORI00000947	100.0	43	0	0	744	786	394	352	5.97e-16	81
pORI00000947	94.0	50	3	0	721	770	395	346	7.73e-15	77
pORI00000446	97.881	1038	0	1	1	1038	1	1016	0.0	1775
pORI00000446	100.0	43	0	0	667	709	722	764	5.97e-16	81
pORI00000446	95.745	47	2	0	666	712	699	745	7.73e-15	77
pORI00000031	97.495	1038	24	1	1	1038	198	1233	0.0	1772
pORI00000031	100.0	43	0	0	667	709	939	981	5.97e-16	81
pORI00000031	95.745	47	2	0	666	712	916	962	7.73e-15	77
pORI00000031	97.674	43	1	0	744	786	862	904	2.78e-14	75
pORI00000702	96.339	1038	36	1	1	1038	1036	1	0.0	1705
pORI00000702	100.0	43	0	0	667	709	295	253	5.97e-16	81
pORI00000702	100.0	43	0	0	744	786	372	330	5.97e-16	81
pORI00000702	94.0	50	3	0	666	715	318	269	7.73e-15	77
pORI00000702	94.0	50	3	0	721	770	373	324	7.73e-15	77
pORI00000421	93.588	655	36	5	1	653	198	848	0.0	972
pORI00000072	96.596	470	14	1	1	470	864	397	0.0	778
pORI00000990	94.268	471	24	2	1	470	341	809	0.0	717
pORI00000834	82.707	798	102	23	1	785	1151	377	0.0	676
pORI00001062	92.144	471	33	4	1	470	924	457	0.0	662
pORI00001164	82.231	771	101	23	28	785	1124	377	0.0	632
pORI00001144	83.552	687	90	17	28	702	1	676	0.0	621
pORI00001056	83.405	693	92	17	28	708	1124	443	0.0	621
pORI00001020	83.552	687	90	17	28	702	1	676	0.0	621
pORI00001011	83.405	693	92	17	28	708	1124	443	0.0	621
pORI00000343	92.308	78	6	0	263	340	316	239	2.12e-25	111
pORI00000308	98.361	61	1	0	279	339	743	803	2.74e-24	108
pORI00000094	98.305	59	1	0	279	337	1164	1106	3.54e-23	104
pORI00000093	98.305	59	1	0	279	337	248	190	3.54e-23	104
pORI00000914	92.958	71	3	1	266	336	642	710	1.27e-22	102
pORI00000595	92.958	71	3	1	266	336	642	710	1.27e-22	102
pORI00000478	92.958	71	3	1	266	336	286	354	1.27e-22	102
pORI00000320	90.789	76	7	0	264	339	799	874	1.27e-22	102
pORI00000315	90.789	76	7	0	264	339	1432	1507	1.27e-22	102
pORI00000312	90.789	76	7	0	264	339	799	874	1.27e-22	102
pORI00000309	90.789	76	7	0	264	339	728	803	1.27e-22	102
pORI00000307	96.667	60	2	0	278	337	938	997	4.58e-22	100
pORI00000116	96.667	60	2	0	278	337	938	997	4.58e-22	100
pORI00000111	95.238	63	3	0	272	334	719	781	4.58e-22	100
pORI00000110	96.667	60	2	0	278	337	2811	2870	4.58e-22	100
pORI00000098	96.667	60	2	0	278	337	938	997	4.58e-22	100
pORI00000095	96.667	60	2	0	278	337	938	997	4.58e-22	100
pORI00000301	89.474	76	8	0	264	339	868	943	5.93e-21	97
pORI00000294	95.082	61	3	0	279	339	428	368	5.93e-21	97
pORI00000292	95.082	61	3	0	279	339	428	368	5.93e-21	97
pORI00000290	95.082	61	3	0	279	339	419	359	5.93e-21	97
pORI00000239	95.082	61	3	0	279	339	242	182	5.93e-21	97
pORI00000224	89.474	76	8	0	264	339	868	943	5.93e-21	97
pORI00000223	89.474	76	8	0	264	339	868	943	5.93e-21	97
pORI00000222	89.474	76	8	0	264	339	868	943	5.93e-21	97
pORI00000097	89.474	76	8	0	264	339	868	943	5.93e-21	97
pORI00000058	89.474	76	8	0	264	339	685	760	5.93e-21	97
pORI00000240	92.424	66	3	2	263	328	1088	1151	7.67e-20	94
pORI00000092	86.957	69	8	1	264	332	868	935	7.73e-15	77