RefSeq NC_003079
DoriC accession number pORI00000309
OriC length 1046 nt
OriC AT content 0.4618
The location of oriC region 118..1163 nt
Browse in NCBI
OriC map
OriC sequences
CATCGTTATTGTGTTGTAAGGTGAGTTGCGTTTTTGTAAGAAGATTGAAGCAACCACTTGAGATTTTTTTTGCGTGTGATTTATTGTCTTTAAACGAAAAAACCCACGTTATTAGGCGTGGGTTTTTTCGAAGGTTAGAAGTTTCGCGGACTATCTAACCCAAGGTAACAGGGTGTACAAGACCGCTGCAACCAAATCTGCCCTTTCAGTGTAGCCGCAGTTGGTCCTTCACTTCAAGATCTACGTATCAGCAATTTCTTGTACACCCTCTACCAATGGCTGCTGCCAATGGCGTTAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGGGCCGAGATACCAACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAACGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGGTTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCGGCGTGGCCTTTTCCGGGTTCTTGTTTTTTGCTCACATGTTTCTTTTGGTGTTATCCCCTGATTCTGTGGATAACCGCATTACCGTCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCTGATGCTGCATTTTCTCCTTACGCATCTGTGCGGCATTTCACACCCGGCATGGCGCACTTTTCATACAATCTGCACTGATGCCGCATGGTTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGGCTGCGCCCCGACACCCGCTAAAACCCCCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCACTCACAGGCAAGCTGTGAGCGTCTCCGGGAGCTGCTTGTG
CATCGTTATTGTGTTGTAAGGTGAGTTGCGTTTTTGTAAGAAGATTGAAGCAACCACTTGAGATTTTTTTTGCGTGTGATTTATTGTCTTTAAACGAAAAAACCCACGTTATTAGGCGTGGGTTTTTTCGAAGGTTAGAAGTTTCGCGGACTATCTAACCCAAGGTAACAGGGTGTACAAGACCGCTGCAACCAAATCTGCCCTTTCAGTGTAGCCGCAGTTGGTCCTTCACTTCAAGATCTACGTATCAGCAATTTCTTGTACACCCTCTACCAATGGCTGCTGCCAATGGCGTTAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGGGCCGAGATACCAACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAACGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGGTTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCGGCGTGGCCTTTTCCGGGTTCTTGTTTTTTGCTCACATGTTTCTTTTGGTGTTATCCCCTGATTCTGTGGATAACCGCATTACCGTCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCTGATGCTGCATTTTCTCCTTACGCATCTGTGCGGCATTTCACACCCGGCATGGCGCACTTTTCATACAATCTGCACTGATGCCGCATGGTTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGGCTGCGCCCCGACACCCGCTAAAACCCCCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCACTCACAGGCAAGCTGTGAGCGTCTCCGGGAGCTGCTTGTG
AT-rich region
The information of repeat sequences

Motif GTTHTTGT

StartP-valueSite
51.57e-05CATCGTTATTGTGTTGTAAGGT
5923.40e-05TTGAGCGTCGGTTTTTGTGATGCTCGTC
303.40e-05GGTGAGTTGCGTTTTTGTAAGAAGATTG
6585.30e-05CCTTTTCCGGGTTCTTGTTTTTTGCTCA
806.69e-05TTGCGTGTGATTTATTGTCTTTAAACGA

Motif CTAKGGRDAAACGC

StartP-valueSite
6232.23e-09GGGGCGGAGCCTATGGAAAAACGCCAGCGGCGTG
5282.85e-07GAGGGAGCCACCAGGGGGAAACGCCTGGTATCTT
4355.53e-07ACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCC
7051.02e-06TCCCCTGATTCTGTGGATAACCGCATTACCGTCT
4592.16e-06CACGCTTCCCGAAGGGAGAAAGGCGGACAGGTAT

Motif WCAAGAYBDHHGYAACCRVAT

StartP-valueSite
1772.58e-10AACAGGGTGTACAAGACCGCTGCAACCAAATCTGCCCTTTC
399.22e-10CGTTTTTGTAAGAAGATTGAAGCAACCACTTGAGATTTTTT
3214.76e-09CGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGC
2347.09e-09GTCCTTCACTTCAAGATCTACGTATCAGCAATTTCTTGTAC
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000309 100.0 1046 0 0 1 1046 1 1046 0.0 1932
pORI00000308 98.806 921 10 1 1 921 1 920 0.0 1639
pORI00000012 90.42 1023 75 21 35 1046 54 1064 0.0 1325
pORI00000058 93.612 861 41 12 191 1046 151 1002 0.0 1273
pORI00000343 89.351 986 87 16 64 1039 981 4 0.0 1223
pORI00000315 94.987 778 35 4 271 1045 973 1749 0.0 1218
pORI00000320 93.235 813 42 11 191 995 259 1066 0.0 1184
pORI00000312 93.235 813 42 11 191 995 259 1066 0.0 1184
pORI00000306 93.598 781 42 8 271 1046 908 131 0.0 1158
pORI00000022 88.377 955 79 26 64 995 27 972 0.0 1120
pORI00000112 91.98 798 47 15 191 978 1117 1907 0.0 1110
pORI00000239 92.061 655 30 15 271 908 727 78 0.0 902
pORI00000111 85.017 881 93 36 124 995 126 976 0.0 861
pORI00000301 93.091 550 23 9 271 806 398 946 0.0 791
pORI00000294 93.091 550 23 8 271 806 913 365 0.0 791
pORI00000292 93.091 550 23 8 271 806 913 365 0.0 791
pORI00000290 93.091 550 23 8 271 806 904 356 0.0 791
pORI00000224 93.091 550 23 9 271 806 398 946 0.0 791
pORI00000223 93.091 550 23 9 271 806 398 946 0.0 791
pORI00000223 92.157 102 8 0 945 1046 1488 1589 2.1e-35 145
pORI00000222 93.091 550 23 9 271 806 398 946 0.0 791
pORI00000097 93.091 550 23 9 271 806 398 946 0.0 791
pORI00000097 92.157 102 8 0 945 1046 2008 2109 2.1e-35 145
pORI00000092 92.364 550 24 12 271 806 398 943 0.0 767
pORI00000092 92.157 102 8 0 945 1046 1872 1973 2.1e-35 145
pORI00000092 98.077 52 1 0 755 806 1007 1058 2.78e-19 92
pORI00000094 77.156 858 130 48 121 965 1744 940 0.0 438
pORI00000093 77.156 858 130 48 121 965 828 24 0.0 438
pORI00000240 88.986 345 26 9 697 1041 1058 1390 0.0 416
pORI00000240 86.957 69 6 2 594 662 1002 1067 2.8e-14 75
pORI00000008 88.816 304 31 3 271 572 1405 1103 0.0 370
pORI00000086 83.117 385 44 18 271 653 744 379 0.0 331
pORI00000061 82.821 390 44 18 271 657 374 743 0.0 327
pORI00000244 82.857 385 45 16 271 653 450 815 0.0 326
pORI00000043 82.812 384 46 17 271 652 350 715 0.0 326
pORI00000198 80.127 473 58 25 191 651 236 684 0.0 320
pORI00000110 82.461 382 48 16 271 651 2382 2745 0.0 316
pORI00000110 80.417 240 36 10 743 976 2812 3046 9.66896e-44 172
pORI00000056 81.793 368 45 19 271 635 210 558 0.0 289
pORI00000060 78.667 450 69 21 191 635 2186 1759 0.0 274
pORI00000060 96.0 150 6 0 896 1045 1530 1381 0.0 244
pORI00000307 79.581 382 59 16 271 651 509 872 0.0 255
pORI00000307 78.125 256 40 15 743 991 939 1185 1.63e-36 148
pORI00000116 79.581 382 59 16 271 651 509 872 0.0 255
pORI00000116 78.125 256 40 15 743 991 939 1185 1.63e-36 148
pORI00000098 79.581 382 59 16 271 651 509 872 0.0 255
pORI00000098 78.788 231 35 13 743 965 939 1163 7.57e-35 143
pORI00000095 79.581 382 59 16 271 651 509 872 0.0 255
pORI00000095 78.788 231 35 13 743 965 939 1163 7.57e-35 143
pORI00000238 96.0 150 6 0 896 1045 1057 1206 0.0 244
pORI00000069 80.368 326 43 16 312 635 3374 3680 0.0 228
pORI00000284 84.756 164 14 3 483 635 367 204 3.5e-38 154
pORI00000234 84.756 164 14 3 483 635 367 204 3.5e-38 154
pORI00000210 84.756 164 14 3 483 635 367 204 3.5e-38 154
pORI00000209 84.756 164 14 3 483 635 367 204 3.5e-38 154
pORI00001057 96.721 61 2 0 743 803 760 700 1.28e-22 102
pORI00000947 96.721 61 2 0 743 803 782 722 1.28e-22 102
pORI00000921 90.789 76 7 0 728 803 264 339 1.28e-22 102
pORI00000702 96.721 61 2 0 743 803 760 700 1.28e-22 102
pORI00000446 90.789 76 7 0 728 803 264 339 1.28e-22 102
pORI00000072 96.721 61 2 0 743 803 588 528 1.28e-22 102
pORI00000031 90.789 76 7 0 728 803 459 534 1.28e-22 102
pORI00001164 98.246 57 1 0 743 799 874 818 4.62e-22 100
pORI00001144 91.667 72 6 0 728 799 236 307 4.62e-22 100
pORI00001062 98.246 57 1 0 743 799 648 592 4.62e-22 100
pORI00001056 98.246 57 1 0 743 799 874 818 4.62e-22 100
pORI00001020 91.667 72 6 0 728 799 236 307 4.62e-22 100
pORI00001011 98.246 57 1 0 743 799 874 818 4.62e-22 100
pORI00000834 98.246 57 1 0 743 799 874 818 4.62e-22 100
pORI00000181 96.667 60 2 0 897 956 784 725 4.62e-22 100
pORI00000124 93.548 62 2 1 897 956 783 844 2.78e-19 92
pORI00000011 93.333 60 3 1 897 956 784 842 3.6e-18 88