DoriC

RefSeq

NC_021665

DoriC accession number

pORI00000294

OriC length

4050 nt

OriC AT content

0.559

The location of oriC region

1..4050 nt

Browse in NCBI

OriC map

OriC sequences

GCGGCCGCAATTCGGCGCGCCTCAGCGTTTAAACCCGCTGATCCTAGAGGGCCGCATCATGTAATTAGTTATGTCACGCTTACATTCACGCCCTCCCCCCACATCCGCTCTAACCGAAAAGGAAGGAGTTAGACAACCTGAAGTCTAGGTCCCTATTTATTTTTTTATAGTTATGTTAGTATTAAGAACGTTATTTATATTTCAAATTTTTCTTTTTTTTCTGTACAGACGCGTGTACGCATGTAACATTATACTGAAAACCTTGCTTGAGAAGGTTTTGGGACGCTCGAAGGCTTTAATTTGCAAGCTGCGGCCCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGCCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAAATTAAAAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAACTTGGTCTGACAGTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGATCTGTCTATTTCGTTCATCCATAGTTGCCTGACTCCCCGTCGTGTAGATAACTACGATACGGGAGCGCTTACCATCTGGCCCCAGTGCTGCAATGATACCGCGAGACCCACGCTCACCGGCTCCAGATTTATCAGCAATAAACCAGCCAGCCGGAAGGGCCGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAGTTAATAGTTTGCGCAACGTTGTTGGCATTGCTACAGGCATCGTGGTGTCACTCTCGTCGTTTGGTATGGCTTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATCCCCCATGTTGTGCAAAAAAGCGGTTAGCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTAAGTTGGCCGCAGTGTTATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGACTGGTGAGTACTCAACCAAGTCATTCTGAGAATAGTGTATGCGGCGACCGAGTTGCTCTTGCCCGGCGTCAATACGGGATAATAGTGTATCACATAGCAGAACTTTAAAAGTGCTCATCATTGGAAAACGTTCTTCGGGGCGAAAACTCTCAAGGATCTTACCGCTGTTGAGATCCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTTCAGCATCTTTTACTTTCACCAGCGTTTCTGGGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGGAATAAGGGCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAATGGGTAATAACTGATATAATTAAATTGAAGCTCTAATTTGTGAGTTTAGTATACATGCATTTACTTATAATACAGTTTTTTAGTTTTGCTGGCCGCATCTTCTCAAATATGCTTCCCAGCCTGCTTTTCTGTAACGTTCACCCTCTACCTTAGCATCCCTTCCCTTTGCAAATAGTCCTCTTCCAACAATAATAATGTCAGATCCTGTAGAGACCACATCATCCACGGTTCTATACTGTTGACCCAATGCGTCTCCCTTGTCATCTAAACCCACACCGGGTGTCATAATCAACCAATCGTAACCTTCATCTCTTCCACCCATGTCTCTTTGAGCAATAAAGCCGATAACAAAATCTTTGTCGCTCTTCGCAATGTCAACAGTACCCTTAGTATATTCTCCAGTAGATAGGGAGCCCTTGCATGACAATTCTGCTAACATCAAAAGGCCTCTAGGTTCCTTTGTTACTTCTTCTGCCGCCTGCTTCAAACCGCTAACAATACCTGGGCCCACCACACCGTGTGCATTCGTAATGTCTGCCCATTCTGCTATTCTGTATACACCCGCAGAGTACTGCAATTTGACTGTATTACCAATGTCAGCAAATTTTCTGTCTTCGAAGAGTAAAAAATTGTACTTGGCGGATAATGCCTTTAGCGGCTTAACTGTGCCCTCCATGGAAAAATCAGTCAAGATATCCACATGTGTTTTTAGTAAACAAATTTTGGGACCTAATGCTTCAACTAACTCCAGTAATTCCTTGGTGGTACGAACATCCAATGAAGCACACAAGTTTGTTTGCTTTTCGTGCATGATATTAAATAGCTTGGCAGCAACAGGACTAGGATGAGTAGCAGCACGTTCCTTATATGTAGCTTTCGACATGATTTATCTTCGTTTCCTGCAGGTTTTTGTTCTGTGCAGTTGGGTTAAGAATACTGGGCAATTTCATGTTTCTTCAACACTACATATGCGTATATATACCAATCTAAGTCTGTGCTCCTTCCTTCGTTCTTCCTTCTGTTCGGAGATTACCGAATCAAAAAAATTTCAAAGAAACCGAAATCAAAAAAAAGAATAAAAAAAAAATGATGAATTGAATTGAAAAGCTAGCTTATCGATGGGTCCTTTTCATCACGTGCTATAAAAATAATTATAATTTAAATTTTTTAATATAAATATATAAATTAAAAATAGAAAGTAAAAAAAGAAATTAAAGAAAAAATAGTTTTTGTTTTCCGAAGATGTAAAAGACTCTAGGGGGATCGCCAACAAATACTACCTTTTATCTTGCTCTTCCTGCTCTCAGGTATTAATGCCGAATTGTTTCATCTTGTCTGTGTAGAAGACCACACACGAAAATCCTGTGATTTTACATTTTACTTATCGTTAATCGAATGTATATCTATTTAATCTGCTTTTCTTGTCTAATAAATATATATGTAAAGTACGCTTTTTGTTGAAATTTTTTAAACCTTTGTTTATTTTTTTTTCTTCATTCCGTAACTCTTCTACCTTCTTTATTTACTTTCTAAAATCCAAATACAAAACATAAAAATAAATAAACACAGAGTAAATTCCCAAATTATTCCATCATTAAAAGATACGAGGCGCGTGTAAGTTACAGGCAAGCGATCCGTCCGCCGGCGAACGTGGCGAGAAAGGAAGGGAAGAAAGCGAAAGGAGCGGGGGCTAGGGCGGTGGGAAGTGTAGGGGTCACGCTGGGCGTAACCACCACACCCGCCGCGCTTAATGGGGCGCTACAGGGCGCGTGGGGATGATCCACTAGTGAATTTAGGAGGCTTACTTGTCTGCTTTCTTCATTAGAATCAATCCTTTTTTAAAAGTCAATCCCGTTTGTTGAA

AT-rich region

The information of repeat sequences

Motif GGHRAGCGAWANSAGCDVVGBCDAABGCGGYRADAARGGDA

Start	P-value		Site
3857	8.70e-18	AAGGAAGGGA	AGAAAGCGAAAGGAGCGGGGGCTAGGGCGGTGGGAAGTGTA	GGGGTCACGC
3812	4.39e-17	GTAAGTTACA	GGCAAGCGATCCGTCCGCCGGCGAACGTGGCGAGAAAGGAA	GGGAAGAAAG
419	2.03e-16	GTTCGGCTGC	GGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTA	TCCACAGAAT
2099	1.45e-15	AGCGTTTCTG	GGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGGA	ATAAGGGCGA

Motif AAHAAAAAAATTAAAAADAAA

Start	P-value		Site
3389	1.36e-10	ATAGAAAGTA	AAAAAAGAAATTAAAGAAAAA	ATAGTTTTTG
3254	3.18e-10	ACCGAAATCA	AAAAAAAGAATAAAAAAAAAA	TGATGAATTG
3727	1.26e-09	CTAAAATCCA	AATACAAAACATAAAAATAAA	TAAACACAGA
3363	1.26e-09	TTTTAATATA	AATATATAAATTAAAAATAGA	AAGTAAAAAA
3224	5.17e-09	AGATTACCGA	ATCAAAAAAATTTCAAAGAAA	CCGAAATCAA

Motif KGSRKYGCTACAGRSHKCKTGRDG

Start	P-value		Site
3939	5.65e-13	CCGCGCTTAA	TGGGGCGCTACAGGGCGCGTGGGG	ATGATCCACT
1618	1.64e-12	CAACGTTGTT	GGCATTGCTACAGGCATCGTGGTG	TCACTCTCGT
940	1.96e-12	GAGGTATGTA	GGCGGTGCTACAGAGTTCTTGAAG	TGGTGGCCTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000294	100.0	4050	0	0	1	4050	1	4050	0.0	7480
pORI00000292	99.975	4050	0	1	1	4050	2	4050	0.0	7472
pORI00000290	100.0	4041	0	0	10	4050	1	4041	0.0	7463
pORI00000301	99.899	995	1	0	316	1310	995	1	0.0	1832
pORI00000224	99.799	995	2	0	316	1310	995	1	0.0	1827
pORI00000223	99.799	995	2	0	316	1310	995	1	0.0	1827
pORI00000222	99.799	995	2	0	316	1310	995	1	0.0	1827
pORI00000097	99.799	995	2	0	316	1310	995	1	0.0	1827
pORI00000092	99.095	995	3	6	316	1310	989	1	0.0	1783
pORI00000092	100.0	101	0	0	316	416	1107	1007	0.0	187
pORI00000239	99.894	946	1	0	365	1310	179	1124	0.0	1742
pORI00000306	94.022	803	31	9	365	1163	371	1160	0.0	1201
pORI00000320	92.839	796	32	15	367	1160	875	103	0.0	1131
pORI00000312	92.839	796	32	15	367	1160	875	103	0.0	1131
pORI00000112	91.476	786	40	17	365	1147	1735	974	0.0	1061
pORI00000022	90.164	793	55	14	365	1151	783	8	0.0	1011
pORI00000012	87.687	804	62	25	365	1163	826	55	0.0	902
pORI00000343	87.266	801	70	22	368	1163	240	1013	0.0	885
pORI00000058	87.359	799	61	27	365	1159	763	1	0.0	880
pORI00000315	93.478	552	23	6	365	915	1510	971	0.0	808
pORI00000309	93.091	550	23	8	365	913	806	271	0.0	791
pORI00000308	92.727	550	25	8	365	913	806	271	0.0	780
pORI00000111	84.603	643	51	26	365	1005	788	192	0.0	597
pORI00000008	81.462	561	80	22	611	1159	1103	1651	0.0	438
pORI00000094	80.943	488	57	25	548	1032	1248	1702	0.0	353
pORI00000094	98.276	58	1	0	372	429	1108	1165	5.04e-22	102
pORI00000093	80.943	488	57	25	548	1032	332	786	0.0	353
pORI00000093	98.276	58	1	0	372	429	192	249	5.04e-22	102
pORI00000198	80.769	494	53	30	546	1033	666	209	0.0	348
pORI00000086	83.375	397	43	19	529	923	378	753	0.0	346
pORI00000043	83.505	388	41	17	531	915	715	348	0.0	340
pORI00000060	77.414	642	91	40	520	1151	1732	2329	0.0	333
pORI00000060	100.0	147	0	0	1164	1310	147	1	0.0	272
pORI00000060	100.0	34	0	0	1163	1196	3335	3368	2.38e-10	64
pORI00000110	82.741	394	46	18	532	923	2745	2372	0.0	331
pORI00000110	100.0	57	0	0	372	428	2868	2812	3.89e-23	106
pORI00000244	83.243	370	40	16	548	915	797	448	0.0	320
pORI00000061	82.188	393	47	17	525	915	743	372	0.0	316
pORI00000056	82.385	369	46	15	548	915	558	208	0.0	303
pORI00000307	76.312	629	84	50	532	1150	872	299	0.0	276
pORI00000307	100.0	57	0	0	372	428	995	939	3.89e-23	106
pORI00000116	76.312	629	84	50	532	1150	872	299	0.0	276
pORI00000116	100.0	57	0	0	372	428	995	939	3.89e-23	106
pORI00000098	76.312	629	84	50	532	1150	872	299	0.0	276
pORI00000098	100.0	57	0	0	372	428	995	939	3.89e-23	106
pORI00000095	76.312	629	84	50	532	1150	872	299	0.0	276
pORI00000095	100.0	57	0	0	372	428	995	939	3.89e-23	106
pORI00000069	76.97	495	77	28	525	1005	3703	3232	0.0	248
pORI00000284	85.034	147	10	5	548	683	204	349	3.84e-33	139
pORI00000234	85.034	147	10	5	548	683	204	349	3.84e-33	139
pORI00000210	85.034	147	10	5	548	683	204	349	3.84e-33	139
pORI00000209	85.034	147	10	5	548	683	204	349	3.84e-33	139
pORI00001057	95.082	61	3	0	368	428	700	760	2.34e-20	97
pORI00000947	95.082	61	3	0	368	428	722	782	2.34e-20	97
pORI00000921	89.474	76	8	0	368	443	339	264	2.34e-20	97
pORI00000702	95.082	61	3	0	368	428	700	760	2.34e-20	97
pORI00000446	89.474	76	8	0	368	443	339	264	2.34e-20	97
pORI00000072	95.082	61	3	0	368	428	528	588	2.34e-20	97
pORI00000031	89.474	76	8	0	368	443	534	459	2.34e-20	97
pORI00001164	96.491	57	2	0	372	428	818	874	8.43e-20	95
pORI00001144	90.278	72	7	0	372	443	307	236	8.43e-20	95
pORI00001062	96.491	57	2	0	372	428	592	648	8.43e-20	95
pORI00001056	96.491	57	2	0	372	428	818	874	8.43e-20	95
pORI00001020	90.278	72	7	0	372	443	307	236	8.43e-20	95
pORI00001011	96.491	57	2	0	372	428	818	874	8.43e-20	95
pORI00000834	96.491	57	2	0	372	428	818	874	8.43e-20	95
pORI00000240	81.818	110	15	4	365	474	1162	1058	1.41e-17	88
pORI00000240	86.441	59	5	1	531	589	1057	1002	8.55e-10	62