DoriC

RefSeq

NC_021652

DoriC accession number

pORI00000290

OriC length

4041 nt

OriC AT content

0.56

The location of oriC region

1..4041 nt

Browse in NCBI

OriC map

OriC sequences

ATTCGGCGCGCCTCAGCGTTTAAACCCGCTGATCCTAGAGGGCCGCATCATGTAATTAGTTATGTCACGCTTACATTCACGCCCTCCCCCCACATCCGCTCTAACCGAAAAGGAAGGAGTTAGACAACCTGAAGTCTAGGTCCCTATTTATTTTTTTATAGTTATGTTAGTATTAAGAACGTTATTTATATTTCAAATTTTTCTTTTTTTTCTGTACAGACGCGTGTACGCATGTAACATTATACTGAAAACCTTGCTTGAGAAGGTTTTGGGACGCTCGAAGGCTTTAATTTGCAAGCTGCGGCCCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGCCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAAATTAAAAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAACTTGGTCTGACAGTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGATCTGTCTATTTCGTTCATCCATAGTTGCCTGACTCCCCGTCGTGTAGATAACTACGATACGGGAGCGCTTACCATCTGGCCCCAGTGCTGCAATGATACCGCGAGACCCACGCTCACCGGCTCCAGATTTATCAGCAATAAACCAGCCAGCCGGAAGGGCCGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAGTTAATAGTTTGCGCAACGTTGTTGGCATTGCTACAGGCATCGTGGTGTCACTCTCGTCGTTTGGTATGGCTTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATCCCCCATGTTGTGCAAAAAAGCGGTTAGCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTAAGTTGGCCGCAGTGTTATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGACTGGTGAGTACTCAACCAAGTCATTCTGAGAATAGTGTATGCGGCGACCGAGTTGCTCTTGCCCGGCGTCAATACGGGATAATAGTGTATCACATAGCAGAACTTTAAAAGTGCTCATCATTGGAAAACGTTCTTCGGGGCGAAAACTCTCAAGGATCTTACCGCTGTTGAGATCCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTTCAGCATCTTTTACTTTCACCAGCGTTTCTGGGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGGAATAAGGGCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAATGGGTAATAACTGATATAATTAAATTGAAGCTCTAATTTGTGAGTTTAGTATACATGCATTTACTTATAATACAGTTTTTTAGTTTTGCTGGCCGCATCTTCTCAAATATGCTTCCCAGCCTGCTTTTCTGTAACGTTCACCCTCTACCTTAGCATCCCTTCCCTTTGCAAATAGTCCTCTTCCAACAATAATAATGTCAGATCCTGTAGAGACCACATCATCCACGGTTCTATACTGTTGACCCAATGCGTCTCCCTTGTCATCTAAACCCACACCGGGTGTCATAATCAACCAATCGTAACCTTCATCTCTTCCACCCATGTCTCTTTGAGCAATAAAGCCGATAACAAAATCTTTGTCGCTCTTCGCAATGTCAACAGTACCCTTAGTATATTCTCCAGTAGATAGGGAGCCCTTGCATGACAATTCTGCTAACATCAAAAGGCCTCTAGGTTCCTTTGTTACTTCTTCTGCCGCCTGCTTCAAACCGCTAACAATACCTGGGCCCACCACACCGTGTGCATTCGTAATGTCTGCCCATTCTGCTATTCTGTATACACCCGCAGAGTACTGCAATTTGACTGTATTACCAATGTCAGCAAATTTTCTGTCTTCGAAGAGTAAAAAATTGTACTTGGCGGATAATGCCTTTAGCGGCTTAACTGTGCCCTCCATGGAAAAATCAGTCAAGATATCCACATGTGTTTTTAGTAAACAAATTTTGGGACCTAATGCTTCAACTAACTCCAGTAATTCCTTGGTGGTACGAACATCCAATGAAGCACACAAGTTTGTTTGCTTTTCGTGCATGATATTAAATAGCTTGGCAGCAACAGGACTAGGATGAGTAGCAGCACGTTCCTTATATGTAGCTTTCGACATGATTTATCTTCGTTTCCTGCAGGTTTTTGTTCTGTGCAGTTGGGTTAAGAATACTGGGCAATTTCATGTTTCTTCAACACTACATATGCGTATATATACCAATCTAAGTCTGTGCTCCTTCCTTCGTTCTTCCTTCTGTTCGGAGATTACCGAATCAAAAAAATTTCAAAGAAACCGAAATCAAAAAAAAGAATAAAAAAAAAATGATGAATTGAATTGAAAAGCTAGCTTATCGATGGGTCCTTTTCATCACGTGCTATAAAAATAATTATAATTTAAATTTTTTAATATAAATATATAAATTAAAAATAGAAAGTAAAAAAAGAAATTAAAGAAAAAATAGTTTTTGTTTTCCGAAGATGTAAAAGACTCTAGGGGGATCGCCAACAAATACTACCTTTTATCTTGCTCTTCCTGCTCTCAGGTATTAATGCCGAATTGTTTCATCTTGTCTGTGTAGAAGACCACACACGAAAATCCTGTGATTTTACATTTTACTTATCGTTAATCGAATGTATATCTATTTAATCTGCTTTTCTTGTCTAATAAATATATATGTAAAGTACGCTTTTTGTTGAAATTTTTTAAACCTTTGTTTATTTTTTTTTCTTCATTCCGTAACTCTTCTACCTTCTTTATTTACTTTCTAAAATCCAAATACAAAACATAAAAATAAATAAACACAGAGTAAATTCCCAAATTATTCCATCATTAAAAGATACGAGGCGCGTGTAAGTTACAGGCAAGCGATCCGTCCGCCGGCGAACGTGGCGAGAAAGGAAGGGAAGAAAGCGAAAGGAGCGGGGGCTAGGGCGGTGGGAAGTGTAGGGGTCACGCTGGGCGTAACCACCACACCCGCCGCGCTTAATGGGGCGCTACAGGGCGCGTGGGGATGATCCACTAGTGAATTTAGGAGGCTTACTTGTCTGCTTTCTTCATTAGAATCAATCCTTTTTTAAAAGTCAATCCCGTTTGTTGAA

AT-rich region

The information of repeat sequences

Motif GGHRAGCGAWANSAGCDVVGBCDAABGCGGYRADAARGGDA

Start	P-value		Site
3848	8.53e-18	AAGGAAGGGA	AGAAAGCGAAAGGAGCGGGGGCTAGGGCGGTGGGAAGTGTA	GGGGTCACGC
3803	4.31e-17	GTAAGTTACA	GGCAAGCGATCCGTCCGCCGGCGAACGTGGCGAGAAAGGAA	GGGAAGAAAG
410	1.99e-16	GTTCGGCTGC	GGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTA	TCCACAGAAT
2090	1.43e-15	AGCGTTTCTG	GGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGGA	ATAAGGGCGA

Motif CCRVCGMGCBKRRAGGGSCG

Start	P-value		Site
1482	2.15e-10	CAGCAATAAA	CCAGCCAGCCGGAAGGGCCG	AGCGCAGAAG
3917	3.50e-10	ACCACCACAC	CCGCCGCGCTTAATGGGGCG	CTACAGGGCG
324	3.50e-10	AATGAATCGG	CCAACGCGCGGGGAGAGGCG	GTTTGCGTAT
26	7.28e-10	GCGTTTAAAC	CCGCTGATCCTAGAGGGCCG	CATCATGTAA

Motif AAAANRAAGDADWAAAWVAAHHTRAAGWA

Start	P-value		Site
3244	2.02e-12	AACCGAAATC	AAAAAAAAGAATAAAAAAAAAATGATGAA	TTGAATTGAA
3369	2.48e-12	ATAAATTAAA	AATAGAAAGTAAAAAAAGAAATTAAAGAA	AAAATAGTTT
1248	3.67e-12	TTTTAAATTA	AAAATGAAGTTTTAAATCAATCTAAAGTA	TATATGAGTA
108	1.06e-11	GCTCTAACCG	AAAAGGAAGGAGTTAGACAACCTGAAGTC	TAGGTCCCTA
3723	5.07e-11	ATCCAAATAC	AAAACATAAAAATAAATAAACACAGAGTA	AATTCCCAAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000294	100.0	4041	0	0	1	4041	10	4050	0.0	7463
pORI00000292	100.0	4041	0	0	1	4041	10	4050	0.0	7463
pORI00000290	100.0	4041	0	0	1	4041	1	4041	0.0	7463
pORI00000301	99.899	995	1	0	307	1301	995	1	0.0	1832
pORI00000224	99.799	995	2	0	307	1301	995	1	0.0	1827
pORI00000223	99.799	995	2	0	307	1301	995	1	0.0	1827
pORI00000222	99.799	995	2	0	307	1301	995	1	0.0	1827
pORI00000097	99.799	995	2	0	307	1301	995	1	0.0	1827
pORI00000092	99.095	995	3	6	307	1301	989	1	0.0	1783
pORI00000092	100.0	101	0	0	307	407	1107	1007	0.0	187
pORI00000239	99.894	946	1	0	356	1301	179	1124	0.0	1742
pORI00000306	94.022	803	31	9	356	1154	371	1160	0.0	1201
pORI00000320	92.839	796	32	15	358	1151	875	103	0.0	1131
pORI00000312	92.839	796	32	15	358	1151	875	103	0.0	1131
pORI00000112	91.476	786	40	17	356	1138	1735	974	0.0	1061
pORI00000022	90.164	793	55	14	356	1142	783	8	0.0	1011
pORI00000012	87.687	804	62	25	356	1154	826	55	0.0	902
pORI00000343	87.266	801	70	22	359	1154	240	1013	0.0	885
pORI00000058	87.359	799	61	27	356	1150	763	1	0.0	880
pORI00000315	93.478	552	23	6	356	906	1510	971	0.0	808
pORI00000309	93.091	550	23	8	356	904	806	271	0.0	791
pORI00000308	92.727	550	25	8	356	904	806	271	0.0	780
pORI00000111	84.603	643	51	26	356	996	788	192	0.0	597
pORI00000008	81.462	561	80	22	602	1150	1103	1651	0.0	438
pORI00000094	80.943	488	57	25	539	1023	1248	1702	0.0	353
pORI00000094	98.276	58	1	0	363	420	1108	1165	5.02e-22	102
pORI00000093	80.943	488	57	25	539	1023	332	786	0.0	353
pORI00000093	98.276	58	1	0	363	420	192	249	5.02e-22	102
pORI00000198	80.769	494	53	30	537	1024	666	209	0.0	348
pORI00000086	83.375	397	43	19	520	914	378	753	0.0	346
pORI00000043	83.505	388	41	17	522	906	715	348	0.0	340
pORI00000060	77.414	642	91	40	511	1142	1732	2329	0.0	333
pORI00000060	100.0	147	0	0	1155	1301	147	1	0.0	272
pORI00000060	100.0	34	0	0	1154	1187	3335	3368	2.37e-10	64
pORI00000110	82.741	394	46	18	523	914	2745	2372	0.0	331
pORI00000110	100.0	57	0	0	363	419	2868	2812	3.88e-23	106
pORI00000244	83.243	370	40	16	539	906	797	448	0.0	320
pORI00000061	82.188	393	47	17	516	906	743	372	0.0	316
pORI00000056	82.385	369	46	15	539	906	558	208	0.0	303
pORI00000307	76.312	629	84	50	523	1141	872	299	0.0	276
pORI00000307	100.0	57	0	0	363	419	995	939	3.88e-23	106
pORI00000116	76.312	629	84	50	523	1141	872	299	0.0	276
pORI00000116	100.0	57	0	0	363	419	995	939	3.88e-23	106
pORI00000098	76.312	629	84	50	523	1141	872	299	0.0	276
pORI00000098	100.0	57	0	0	363	419	995	939	3.88e-23	106
pORI00000095	76.312	629	84	50	523	1141	872	299	0.0	276
pORI00000095	100.0	57	0	0	363	419	995	939	3.88e-23	106
pORI00000069	76.97	495	77	28	516	996	3703	3232	0.0	248
pORI00000284	85.034	147	10	5	539	674	204	349	3.83e-33	139
pORI00000234	85.034	147	10	5	539	674	204	349	3.83e-33	139
pORI00000210	85.034	147	10	5	539	674	204	349	3.83e-33	139
pORI00000209	85.034	147	10	5	539	674	204	349	3.83e-33	139
pORI00001057	95.082	61	3	0	359	419	700	760	2.34e-20	97
pORI00000947	95.082	61	3	0	359	419	722	782	2.34e-20	97
pORI00000921	89.474	76	8	0	359	434	339	264	2.34e-20	97
pORI00000702	95.082	61	3	0	359	419	700	760	2.34e-20	97
pORI00000446	89.474	76	8	0	359	434	339	264	2.34e-20	97
pORI00000072	95.082	61	3	0	359	419	528	588	2.34e-20	97
pORI00000031	89.474	76	8	0	359	434	534	459	2.34e-20	97
pORI00001164	96.491	57	2	0	363	419	818	874	8.41e-20	95
pORI00001144	90.278	72	7	0	363	434	307	236	8.41e-20	95
pORI00001062	96.491	57	2	0	363	419	592	648	8.41e-20	95
pORI00001056	96.491	57	2	0	363	419	818	874	8.41e-20	95
pORI00001020	90.278	72	7	0	363	434	307	236	8.41e-20	95
pORI00001011	96.491	57	2	0	363	419	818	874	8.41e-20	95
pORI00000834	96.491	57	2	0	363	419	818	874	8.41e-20	95
pORI00000240	81.818	110	15	4	356	465	1162	1058	1.41e-17	88
pORI00000240	86.441	59	5	1	522	580	1057	1002	8.53e-10	62