DoriC

RefSeq

NC_004932

DoriC accession number

pORI00000280

OriC length

1094 nt

OriC AT content

0.6133

The location of oriC region

2220..3313 nt

Browse in NCBI

OriC map

OriC sequences

AAAAATTATGGCTGCCGTTTTGATTTTAGCTGTGGCTGTTGCGCCGGTTTATGGTTTAGCGACGCAAGATAACAGCGTTTCTGTTGCTTCAAGGAATGCAACATGATGTATCGTATTCGATTTGTAACATGAATGAAAATTGACAGACCTTTCGGGTCTGTTTTTTTGTGGAAATATCATGTGTAGTCACGTGGAAATAACACGTGAAACATTAGGTTTCGGATGCAACGTGATATTTCCACCGATTACAGTTGCGTTACTTTGGCACGAACTCATAAATATCAATGGGCAACACGATCAGACCGATTGCTATGAAATGACCTTACTTGTTCTATACTCTTTTGGTTGTCTCTTTTTCAATCCCACCATTTTTGTGGGCGGGTGATGGCAGATGTATTTTGAATGTCAGGTTTAGTCAGGTCAAATAAAAATGACGACTAGCTGAATGCTCTAGTCGCCCTTTTTATGATGGGTGTGATTCTCTTTAAGGTATGAATGTTAGTGAGAAAGGGTCAAAAAAATCAAAAAAAAATCTCCCCCTGCGGGGAAATTTGGTTTAGTCTTTGGTCTTTTAGGTTTTGAGGTTTTAGGTTTTTAAAAAGATGGCGGTTTGGCCAGCTTTTTGGGCGATTTTGACGGAGTCAGAATCGTGTTCTTTCTTATCTTGATACATATAGAAACAACTCAATTTTTAAAAATCGCTATAAATCCAGTGATGTCAAGGGTTAAAAGCGATTTTGACAGCACAAAACTCCATCTGCTATTATTGAGTTACCACACAACAATAATAGAATGCTAGAGAACTAGCGCAGAAGGAGTTTTTTGCTTTGTTATATTCAGATGAATCAAATTATAGCATTCTTGACGACAAAACCGCAACAGGTAAAAAGCGGGATTGGAGAGGAAAAAAGGTGAGATCGTCGCTTGTGGCGGCTCATTATGAAGGACTTGAAAAGCGTACCGGTGCACCTTATTACGGAAAAAAAGCTGAAAAGGTATGTAATTGTGCGGAATGTCTTGTGTTTAGAAGAGATGTTGAAACAGGCAGGCTACGATTATCGAATGCTTATTTCTGTAAAGTGAGGTTATGTTCT

AT-rich region

The information of repeat sequences

Motif GGCGVTTKTGVCRG

Start	P-value		Site
626	2.55e-08	CAGCTTTTTG	GGCGATTTTGACGG	AGTCAGAATC
605	6.74e-08	TTAAAAAGAT	GGCGGTTTGGCCAG	CTTTTTGGGC
34	1.62e-07	TTTTAGCTGT	GGCTGTTGCGCCGG	TTTATGGTTT
731	4.37e-07	AAGGGTTAAA	AGCGATTTTGACAG	CACAAAACTC
920	4.69e-07	AGGTGAGATC	GTCGCTTGTGGCGG	CTCATTATGA

Motif GCAACAKG

Start	P-value		Site
289	1.53e-05	ATATCAATGG	GCAACACG	ATCAGACCGA
98	1.53e-05	TTCAAGGAAT	GCAACATG	ATGTATCGTA
876	2.27e-05	CGACAAAACC	GCAACAGG	TAAAAAGCGG
225	3.48e-05	GGTTTCGGAT	GCAACGTG	ATATTTCCAC

Motif CTCCMYCTGC

Start	P-value		Site
534	5.35e-08	AAAAAAAAAT	CTCCCCCTGC	GGGGAAATTT
752	4.69e-07	CAGCACAAAA	CTCCATCTGC	TATTATTGAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000280	100.0	1094	0	0	1	1094	1	1094	0.0	2021
pORI00000300	82.5	80	8	6	618	694	21	97	1.76e-11	66
pORI00000236	93.333	45	1	2	651	694	175	132	1.76e-11	66
pORI00000224	93.333	45	1	2	651	694	1602	1645	1.76e-11	66
pORI00000223	93.333	45	1	2	651	694	1867	1910	1.76e-11	66
pORI00000251	92.683	41	2	1	653	693	1077	1116	2.95e-09	58