RefSeq NC_001705
DoriC accession number pORI00000236
OriC length 223 nt
OriC AT content 0.704
The location of oriC region 4219..4441 nt
Browse in NCBI
OriC map
OriC sequences
CTATTTAGTTATTTGTTTGGTCACTTATAACTTTAACAGATGGGGTTTTTCTGTGCAACCAATTTTAAGGGTTTTCAATACTTTAAAACACATACATACCAACACTTCAACGCACCTTTCAGCAACTAAAATAAAAATGACGTTATTTCTATATGTATCAAGATAAGAAAGAACAAGTTCAAAACCATCAAAAAAAGACACCTTTTCAGGTGCTTTTTTTATT
CTATTTAGTTATTTGTTTGGTCACTTATAACTTTAACAGATGGGGTTTTTCTGTGCAACCAATTTTAAGGGTTTTCAATACTTTAAAACACATACATACCAACACTTCAACGCACCTTTCAGCAACTAAAATAAAAATGACGTTATTTCTATATGTATCAAGATAAGAAAGAACAAGTTCAAAACCATCAAAAAAAGACACCTTTTCAGGTGCTTTTTTTATT
AT-rich region
The information of repeat sequences

Motif RGKGYTTT

StartP-valueSite
423.21e-06TTTAACAGATGGGGTTTTTCTGTGCAAC
2092.77e-05CACCTTTTCAGGTGCTTTTTTTATT
682.77e-05ACCAATTTTAAGGGTTTTCAATACTTTA

Motif SRCACCTTT

StartP-valueSite
1112.91e-06AACACTTCAACGCACCTTTCAGCAACTAA
1976.39e-06ATCAAAAAAAGACACCTTTTCAGGTGCTT

Motif GCAACY

StartP-valueSite
558.55e-05GTTTTTCTGTGCAACCAATTTTAAGG
1222.53e-04GCACCTTTCAGCAACTAAAATAAAAA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000236 100.0 223 0 0 1 223 1 223 0.0 412
pORI00000224 99.552 223 1 0 1 223 1776 1554 0.0 407
pORI00000223 99.552 223 1 0 1 223 2041 1819 0.0 407
pORI00000300 100.0 174 0 0 1 174 228 55 0.0 322
pORI00000293 98.851 174 2 0 1 174 1 174 0.0 311
pORI00000291 98.851 174 2 0 1 174 1 174 0.0 311
pORI00000289 98.851 174 2 0 1 174 1 174 0.0 311
pORI00000488 100.0 68 0 0 156 223 1149 1082 1.52e-30 126
pORI00000280 93.333 45 1 2 132 175 694 651 3.36e-12 66