RefSeq NC_005248
DoriC accession number pORI00000060
OriC length 3368 nt
OriC AT content 0.4908
The location of oriC region 4811..33 nt
Browse in NCBI
OriC map
OriC sequences
CTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCATCGCCGTTCTCGATACGCTGAACCGTGCGCACGCTCATCCCGGACAGTTCAGCAAGCTGCTCCTGGGACCAGGCACGCGCAAGACGCAGCGACCTGAATTTGTTGGTATCACTCATTTCCTGTCTCCGAATGGAAGATGGTCAGCACACAGTGTTGACCGCGTAATCCTGCGCGACCACGATCTTAACCCGACAGTAACGTGACAGCGGTCTGACATGCCGCATTGAGGTCTTTGAAACCGTAACTTCAGAAGCATGTACGGTCAGATTTAACATAAGAGTTCATTGTACGCACCGTTAAAACGCGCTCAGCGCGCTTCTGGCGCAAAAACCGTAAAAATGGATGTTTTCCCCCGGGTAAACCGGAAAAATGCGTCAGGAACGCTTTCAGCGCGTTGCATGACTATGCATGAAACTGAATGGCGATCGGTTTGGGCGCGTCTGATGCCCATAAGGCGTATTTTCGGACGTTTTCAGCCCTGATAAGAAGAAATCAGACTGTAGTTACAGACGAGTCGTGAGCGATTCACTACGGGAGTCGTCGGCGAGTCATCCAGTATTTTTCCTCGCGACTCTCTGGCGACTCGCCTTCTCTGAACACCAGAGCGACAGTGTGTTGAGTCATCGATAAATCACCGACGACTCGTTGCCGAGTCATCCAGTAGTCGCCGACGAGCCGCTTTTGTATAAATCCGAATAAGAAAATATATTTTTCAAACCATAACAACATGATTTAAAAAGCAAATCAGAAAAAAGTTAGTTTTGCGTGGGGTGTGGGCATCCTGGGAATGAGAACAGACTCGCGTTTTTCTGGAGGAACTGCGGGGATTTTTGATTAAACAATAGTCACCGCAGAGCGGAATTTTATGCAACGCTGGCTGTGCGGCACGGGGATTTTTAATCCCCCGGCCCGTTATTCATCTCCACGGGCGACGGGGATACATAAACCCGACAGCAGAGGACGGGTGAGCGCGAATCCCAGAGATGATGAAAAAAGAGGCAGAGAAACGCGCCCAGGTACGTTTTATCTTATTGCTTTGGTGTTGTCCAGGGTGTCGGGGCTGTGCCCTGACCAGGTGGCATTTGTCTGATTGCGCGTGCGCGGTCCGACAAATGCACATCCTGCCCCGTCCTGTACGTGTTTTTTTCACCAGAACAACTTCACGAAGTGGCGGATGAACGCTACCAACGTTGCCGGGAACGCTTCGGCGATGATGGCATAACGGGGCTGATACAGGCAGCTCCCGGAGACGGACACAGCTTGCCTGTGAGCGGATGCCGGGAGCCGACAAGCCCGTCAGGGCGCGTCAGCGGGTTTTAGCGGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAATATGTTAAATCGGAGTGGTAATTCAGGGAAGTGCTTCATGTGGCAAAGGAAAAATGTGGCTATCGTGCGTAAGTGCAACATGTAGGTAAAGGTGAAATGACGCCTCCTCGCTCACTCGGTCGCTACGCTCCTGCCGTGAGACTGCGGCGGGCGTTACCGGCTCACAAATAACGGGATACGCAGGCAGTGCTCAAATCAGGAAGGACCGGAAAAAGGATGCGGCGTAGCCGTTTTTCCATAGGCTCCGCCCCCCTGACAAGCATCACGAAATCTGACGCTCAAATCAGTGGCGGCGAAACCCGACAGGACTATAAAGATCCCAGGCGTTTCCCCCTGGTAGCTCCCTCGTGCGCTCTCCTGTTCCTGCCTTTCGGTTTACCGGTGTCATTCCGCTGTTATGGCCGCGTTTGTCTCATTCCACGCCTGACACTCAGTTCCGGGTAGGCAGTTCGCTCCAAGCTGGACTGTATGCACGAACCCCCCGTTCAGTCCGACTACCACGCCCGTTCCGGTAACTATCAACTTGAGTCCAACCCGGAAAGACACGACAAATCGCCAGTGGCGGTAGCCATTGGTAACTGAGATGTGCGAGAGATTTATCTGGAGTTCTTGAAGTGGGGGCCTGAGTGCGGCTACACTGGAAGGACAGTTTAGGTGACTCGTCTCGCACAAGACAGTTACCAGGTTAAGCAGTTCCCCAACTGACCTAACCTTCGATCAAACCACCTCCCCAGGTGGTTTTTTCGTTTTCAGAGCAAGAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTTTACAGGAGCGATTATCGTCTTCATCCATGAAGGCGTTTGAAGATTAAACCGGCCTATTTCATAGATCGTAAAATCAGGGTTTTGGGATGGCCGATGAAACCCCATAAAAACCCATAAATACATACACCTACTAACAATCATCTTTTGCTGTACCAGGGTATGAAAAGTCTCAGGGTTCCACCCCAGAATACGCCATCAACAAGTCCTGTCACACCGCCAAATAACATGCAAAAAATTGCGGATGACCGTAATCCGGGGTGCAGATCAATGACTGAGACAAGTATAAACTTCATGCAAAAAGTAATTACAATCAGTCCCAAAGTCAGCGGTGTCCCGGCCCTGATAATCATGCCCGGATTATCTGAATTTCTCAGCGGGGGCTGTGAGCGCCACAACCTGTATCCAAGAGCGGTGCCTACGAGCAGTCCTGCCGTCATCATTGTAAGGCTTACGCCAGCAAGTTTTGTCTCAGTGATAACACCATATGCTCCCCATACAAGGAAAAGTATCGGGAGAAAAAACAAACGCCCGGTTGTCATCTCCCGGTCATAAAGAGCAGCAAAACCGCGTCGTAGTAAAAAAGCCAGCAGGATCCATACCCAGACGGGGGTATTTCGTAAAAAGTCTGCAATATCCATAAGTATTCCCATTATCGCCGCAGCATCCGCCTCAGTCGTTTCTGTTGCCATCTGCTGATCAGCCCGCGCAAAACGAACGTTCTCATGCCACGAATAACCAGCAGCGCACACCAGATCCCCGCAACCCAAAATGACCATGCGCTGGCCGGGGCCGTAAAGTGGTTAAGAACAAGCAACAGCGCGCAGACGACGACAGCCGTAATTACTGATCGGTAAAAACGGCCTTCCTCAGCTATTTTGCTCTTCGCTTCGGCAATTTTCTGGTCAAGAGCGTCATCGCCATGCGCATCAGGGCCGGAAAGATCCGCCACGCTCACCTCAAATACAGCAGCCAGGGCACTCAGTGTTTCCAGGCTTGGCTGATCGCGGGGTCTGACGCTCAGTGGAACGAAAACTCACG
CTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCATCGCCGTTCTCGATACGCTGAACCGTGCGCACGCTCATCCCGGACAGTTCAGCAAGCTGCTCCTGGGACCAGGCACGCGCAAGACGCAGCGACCTGAATTTGTTGGTATCACTCATTTCCTGTCTCCGAATGGAAGATGGTCAGCACACAGTGTTGACCGCGTAATCCTGCGCGACCACGATCTTAACCCGACAGTAACGTGACAGCGGTCTGACATGCCGCATTGAGGTCTTTGAAACCGTAACTTCAGAAGCATGTACGGTCAGATTTAACATAAGAGTTCATTGTACGCACCGTTAAAACGCGCTCAGCGCGCTTCTGGCGCAAAAACCGTAAAAATGGATGTTTTCCCCCGGGTAAACCGGAAAAATGCGTCAGGAACGCTTTCAGCGCGTTGCATGACTATGCATGAAACTGAATGGCGATCGGTTTGGGCGCGTCTGATGCCCATAAGGCGTATTTTCGGACGTTTTCAGCCCTGATAAGAAGAAATCAGACTGTAGTTACAGACGAGTCGTGAGCGATTCACTACGGGAGTCGTCGGCGAGTCATCCAGTATTTTTCCTCGCGACTCTCTGGCGACTCGCCTTCTCTGAACACCAGAGCGACAGTGTGTTGAGTCATCGATAAATCACCGACGACTCGTTGCCGAGTCATCCAGTAGTCGCCGACGAGCCGCTTTTGTATAAATCCGAATAAGAAAATATATTTTTCAAACCATAACAACATGATTTAAAAAGCAAATCAGAAAAAAGTTAGTTTTGCGTGGGGTGTGGGCATCCTGGGAATGAGAACAGACTCGCGTTTTTCTGGAGGAACTGCGGGGATTTTTGATTAAACAATAGTCACCGCAGAGCGGAATTTTATGCAACGCTGGCTGTGCGGCACGGGGATTTTTAATCCCCCGGCCCGTTATTCATCTCCACGGGCGACGGGGATACATAAACCCGACAGCAGAGGACGGGTGAGCGCGAATCCCAGAGATGATGAAAAAAGAGGCAGAGAAACGCGCCCAGGTACGTTTTATCTTATTGCTTTGGTGTTGTCCAGGGTGTCGGGGCTGTGCCCTGACCAGGTGGCATTTGTCTGATTGCGCGTGCGCGGTCCGACAAATGCACATCCTGCCCCGTCCTGTACGTGTTTTTTTCACCAGAACAACTTCACGAAGTGGCGGATGAACGCTACCAACGTTGCCGGGAACGCTTCGGCGATGATGGCATAACGGGGCTGATACAGGCAGCTCCCGGAGACGGACACAGCTTGCCTGTGAGCGGATGCCGGGAGCCGACAAGCCCGTCAGGGCGCGTCAGCGGGTTTTAGCGGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAATATGTTAAATCGGAGTGGTAATTCAGGGAAGTGCTTCATGTGGCAAAGGAAAAATGTGGCTATCGTGCGTAAGTGCAACATGTAGGTAAAGGTGAAATGACGCCTCCTCGCTCACTCGGTCGCTACGCTCCTGCCGTGAGACTGCGGCGGGCGTTACCGGCTCACAAATAACGGGATACGCAGGCAGTGCTCAAATCAGGAAGGACCGGAAAAAGGATGCGGCGTAGCCGTTTTTCCATAGGCTCCGCCCCCCTGACAAGCATCACGAAATCTGACGCTCAAATCAGTGGCGGCGAAACCCGACAGGACTATAAAGATCCCAGGCGTTTCCCCCTGGTAGCTCCCTCGTGCGCTCTCCTGTTCCTGCCTTTCGGTTTACCGGTGTCATTCCGCTGTTATGGCCGCGTTTGTCTCATTCCACGCCTGACACTCAGTTCCGGGTAGGCAGTTCGCTCCAAGCTGGACTGTATGCACGAACCCCCCGTTCAGTCCGACTACCACGCCCGTTCCGGTAACTATCAACTTGAGTCCAACCCGGAAAGACACGACAAATCGCCAGTGGCGGTAGCCATTGGTAACTGAGATGTGCGAGAGATTTATCTGGAGTTCTTGAAGTGGGGGCCTGAGTGCGGCTACACTGGAAGGACAGTTTAGGTGACTCGTCTCGCACAAGACAGTTACCAGGTTAAGCAGTTCCCCAACTGACCTAACCTTCGATCAAACCACCTCCCCAGGTGGTTTTTTCGTTTTCAGAGCAAGAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTTTACAGGAGCGATTATCGTCTTCATCCATGAAGGCGTTTGAAGATTAAACCGGCCTATTTCATAGATCGTAAAATCAGGGTTTTGGGATGGCCGATGAAACCCCATAAAAACCCATAAATACATACACCTACTAACAATCATCTTTTGCTGTACCAGGGTATGAAAAGTCTCAGGGTTCCACCCCAGAATACGCCATCAACAAGTCCTGTCACACCGCCAAATAACATGCAAAAAATTGCGGATGACCGTAATCCGGGGTGCAGATCAATGACTGAGACAAGTATAAACTTCATGCAAAAAGTAATTACAATCAGTCCCAAAGTCAGCGGTGTCCCGGCCCTGATAATCATGCCCGGATTATCTGAATTTCTCAGCGGGGGCTGTGAGCGCCACAACCTGTATCCAAGAGCGGTGCCTACGAGCAGTCCTGCCGTCATCATTGTAAGGCTTACGCCAGCAAGTTTTGTCTCAGTGATAACACCATATGCTCCCCATACAAGGAAAAGTATCGGGAGAAAAAACAAACGCCCGGTTGTCATCTCCCGGTCATAAAGAGCAGCAAAACCGCGTCGTAGTAAAAAAGCCAGCAGGATCCATACCCAGACGGGGGTATTTCGTAAAAAGTCTGCAATATCCATAAGTATTCCCATTATCGCCGCAGCATCCGCCTCAGTCGTTTCTGTTGCCATCTGCTGATCAGCCCGCGCAAAACGAACGTTCTCATGCCACGAATAACCAGCAGCGCACACCAGATCCCCGCAACCCAAAATGACCATGCGCTGGCCGGGGCCGTAAAGTGGTTAAGAACAAGCAACAGCGCGCAGACGACGACAGCCGTAATTACTGATCGGTAAAAACGGCCTTCCTCAGCTATTTTGCTCTTCGCTTCGGCAATTTTCTGGTCAAGAGCGTCATCGCCATGCGCATCAGGGCCGGAAAGATCCGCCACGCTCACCTCAAATACAGCAGCCAGGGCACTCAGTGTTTCCAGGCTTGGCTGATCGCGGGGTCTGACGCTCAGTGGAACGAAAACTCACG
AT-rich region
The information of repeat sequences

Motif TGCVCYGWCCTGDHCGYGTTTKTCTSAYT

StartP-valueSite
12711.75e-13ATGCACATCCTGCCCCGTCCTGTACGTGTTTTTTTCACCAGAACAACTT
19191.24e-12CCGGTGTCATTCCGCTGTTATGGCCGCGTTTGTCTCATTCCACGCCTGA
12121.86e-12GTCGGGGCTGTGCCCTGACCAGGTGGCATTTGTCTGATTGCGCGTGCGC
18794.73e-11AGCTCCCTCGTGCGCTCTCCTGTTCCTGCCTTTCGGTTTACCGGTGTCA
2332.01e-10ACGCGCAAGACGCAGCGACCTGAATTTGTTGGTATCACTCATTTCCTGT

Motif AGTCATCCAGTADTYDCCGACGAGHCGYT

StartP-valueSite
8006.61e-16CTCGTTGCCGAGTCATCCAGTAGTCGCCGACGAGCCGCTTTTGTATAAA
7672.76e-13CAGTGTGTTGAGTCATCGATAAATCACCGACGACTCGTTGCCGAGTCAT
6399.86e-13GATAAGAAGAAATCAGACTGTAGTTACAGACGAGTCGTGAGCGATTCAC
6951.79e-12GTCGTCGGCGAGTCATCCAGTATTTTTCCTCGCGACTCTCTGGCGACTC

Motif GGGGRTTTTT

StartP-valueSite
10376.56e-07TGTGCGGCACGGGGATTTTTAATCCCCCGG
9716.56e-07GAGGAACTGCGGGGATTTTTGATTAAACAA
22644.64e-06CACCTCCCCAGGTGGTTTTTTCGTTTTCAG
29366.71e-06ATACCCAGACGGGGGTATTTCGTAAAAAGT
10041.03e-05TCACCGCAGAGCGGAATTTTATGCAACGCT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000060 100.0 3368 0 0 1 3368 1 3368 0.0 6220
pORI00000060 100.0 33 0 0 3336 3368 147 115 7.11e-10 62
pORI00000060 100.0 33 0 0 115 147 3368 3336 7.11e-10 62
pORI00000238 99.875 2407 1 2 148 2554 2438 34 0.0 4427
pORI00000238 99.748 794 0 2 2543 3335 3226 2434 0.0 1454
pORI00000094 83.482 896 105 32 1461 2329 940 1819 0.0 795
pORI00000093 83.482 896 105 32 1461 2329 24 903 0.0 795
pORI00000069 83.068 880 105 32 1435 2283 4002 3136 0.0 760
pORI00000086 84.403 795 80 37 1435 2216 81 844 0.0 741
pORI00000244 82.232 878 121 27 1460 2325 1097 243 0.0 725
pORI00000061 81.527 904 120 35 1435 2322 1040 168 0.0 701
pORI00000198 88.502 574 55 10 1759 2326 664 96 0.0 684
pORI00000111 87.333 600 64 12 1736 2329 641 48 0.0 676
pORI00000111 88.811 143 14 2 1393 1534 1013 872 8.68805e-44 174
pORI00000110 81.43 867 122 33 1450 2297 3046 2200 0.0 673
pORI00000307 79.457 920 130 42 1435 2328 1185 299 0.0 597
pORI00000116 79.457 920 130 42 1435 2328 1185 299 0.0 597
pORI00000098 79.665 895 125 40 1461 2328 1163 299 0.0 592
pORI00000095 79.665 895 125 40 1461 2328 1163 299 0.0 592
pORI00000334 78.556 928 140 36 1435 2327 82 985 0.0 556
pORI00000314 86.64 509 56 11 1824 2325 530 27 0.0 553
pORI00000314 90.826 327 28 2 1461 1785 932 606 0.0 436
pORI00000075 86.64 509 56 11 1824 2325 530 27 0.0 553
pORI00000075 90.826 327 28 2 1461 1785 932 606 0.0 436
pORI00000043 94.663 356 19 0 1757 2112 700 345 0.0 553
pORI00000322 78.448 928 141 36 1435 2327 82 985 0.0 551
pORI00000056 84.602 578 64 18 1757 2327 560 1 0.0 551
pORI00000200 78.956 594 99 20 1753 2330 688 105 0.0 381
pORI00000320 78.441 603 87 35 1759 2328 705 113 0.0 353
pORI00000320 89.855 138 13 1 1393 1530 1103 967 2.38221e-44 176
pORI00000312 78.441 603 87 35 1759 2328 705 113 0.0 353
pORI00000312 89.855 138 13 1 1393 1530 1103 967 2.38221e-44 176
pORI00000022 78.232 611 88 33 1759 2330 611 7 0.0 350
pORI00000022 89.51 143 13 2 1393 1534 1009 868 1.4013e-45 180
pORI00000012 77.597 616 96 30 1740 2325 673 70 0.0 335
pORI00000012 92.0 150 10 2 1381 1530 1063 916 0.0 209
pORI00000301 77.414 642 91 40 1732 2329 791 160 0.0 333
pORI00000301 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000301 100.0 34 0 0 3335 3368 148 115 1.98e-10 64
pORI00000294 77.414 642 91 40 1732 2329 520 1151 0.0 333
pORI00000294 100.0 147 0 0 1 147 1310 1164 0.0 272
pORI00000294 100.0 34 0 0 3335 3368 1163 1196 1.98e-10 64
pORI00000292 77.414 642 91 40 1732 2329 520 1151 0.0 333
pORI00000292 100.0 147 0 0 1 147 1310 1164 0.0 272
pORI00000292 100.0 34 0 0 3335 3368 1163 1196 1.98e-10 64
pORI00000290 77.414 642 91 40 1732 2329 511 1142 0.0 333
pORI00000290 100.0 147 0 0 1 147 1301 1155 0.0 272
pORI00000290 100.0 34 0 0 3335 3368 1154 1187 1.98e-10 64
pORI00000239 77.414 642 91 40 1732 2329 334 965 0.0 333
pORI00000239 100.0 147 0 0 1 147 1124 978 0.0 272
pORI00000239 100.0 34 0 0 3335 3368 977 1010 1.98e-10 64
pORI00000112 77.229 628 99 33 1732 2325 1591 974 0.0 331
pORI00000112 96.386 83 3 0 1448 1530 1907 1825 8.88e-34 141
pORI00000008 78.899 545 74 27 1822 2329 1103 1643 0.0 331
pORI00000008 93.651 63 4 0 1621 1683 849 911 7.01e-20 95
pORI00000224 77.259 642 92 40 1732 2329 791 160 0.0 327
pORI00000224 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000224 100.0 34 0 0 3335 3368 148 115 1.98e-10 64
pORI00000223 77.259 642 92 40 1732 2329 791 160 0.0 327
pORI00000223 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000223 92.453 106 8 0 1376 1481 1593 1488 4.1e-37 152
pORI00000223 100.0 34 0 0 3335 3368 148 115 1.98e-10 64
pORI00000222 77.259 642 92 40 1732 2329 791 160 0.0 327
pORI00000222 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000222 100.0 34 0 0 3335 3368 148 115 1.98e-10 64
pORI00000097 77.259 642 92 40 1732 2329 791 160 0.0 327
pORI00000097 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000097 92.453 106 8 0 1376 1481 2113 2008 4.1e-37 152
pORI00000097 100.0 34 0 0 3335 3368 148 115 1.98e-10 64
pORI00000092 77.259 642 92 40 1732 2329 791 160 0.0 327
pORI00000092 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000092 92.453 106 8 0 1376 1481 1977 1872 4.1e-37 152
pORI00000092 100.0 34 0 0 3335 3368 148 115 1.98e-10 64
pORI00000306 76.423 615 98 32 1756 2329 540 1148 0.0 289
pORI00000306 95.425 153 7 0 1378 1530 129 281 0.0 244
pORI00000309 78.619 449 71 21 1759 2186 635 191 0.0 274
pORI00000309 96.0 150 6 0 1381 1530 1045 896 0.0 244
pORI00000315 79.849 397 60 17 1732 2109 1366 971 0.0 272
pORI00000315 96.154 156 5 1 1381 1535 1749 1594 0.0 254
pORI00000308 78.396 449 72 21 1759 2186 635 191 0.0 268
pORI00000058 91.351 185 12 3 1348 1531 1033 852 0.0 250
pORI00000343 97.203 143 4 0 1387 1529 4 146 0.0 243
pORI00000240 96.575 146 5 0 1385 1530 1390 1245 0.0 243
pORI00000240 100.0 29 0 0 1759 1787 1043 1015 1.19e-07 55
pORI00000286 78.63 365 59 12 1759 2110 145 503 0.0 224
pORI00000284 84.817 191 17 6 1758 1937 203 392 0.0 182
pORI00000234 84.817 191 17 6 1758 1937 203 392 0.0 182
pORI00000210 84.817 191 17 6 1758 1937 203 392 0.0 182
pORI00000209 84.817 191 17 6 1758 1937 203 392 0.0 182
pORI00000181 96.667 60 2 0 1470 1529 725 784 1.51e-21 100
pORI00000124 93.548 62 2 1 1470 1529 844 783 9.07e-19 92
pORI00000011 93.333 60 3 1 1470 1529 842 784 1.17e-17 88