DoriC

RefSeq

NC_010378

DoriC accession number

pORI00000031

OriC length

1233 nt

OriC AT content

0.5969

The location of oriC region

33658..34890 nt

Browse in NCBI

OriC map

OriC sequences

AAGCCCTCCGCTTGTCTCATTGGCATAATAGCATCTTTAAAAGCACTCTTAAAAGTGCTTATGTTGAGAAAAACATCAGAACAGGTGAGATATGGCTCTTTCCGACATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCGTTGTAGTCAGCTACGGTTTAACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTGTTGCTGTGATCTGTTGCCATGATCCGGATAGGAGTTCAATCTTGATCAAAATTTCCTCAAGGCAACGACTGTTTTGTAAATACCCTCTAAAACGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCGCATGGTTTCACCATGGTTGTATCGAACGAAGCGGCAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGAGCTGAACTCTTCTGGTTTTGAGAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGAAGCGGAATAGCACAGGGATTACATTAGGCACTTACGCACAGTGGTTAAAAAGTGAGCATATTGTTTTTATGTGTGGTTGTCTTGGTTCAGAGTGATCTGTCCTCCGGGTTTACGCAAAGTTATCCACAGGCGCTGTGAGTTTTTTGTTTTGAGCAGAGTTATCCACAGATTTTTTGTGTTTTTTTGCTTATTAAACTTCTTGTTTTTAAGATCTTAAATGTAGATCGGTAGATCTACTTTAAGATCTTTAACTTACTTTAACTTATTCTGCAAACATTGTGCCAGCTTTTTTATCAATAATTTCATTAAGATAGGTGTTGTTTTTTGTCGCCTCAAAATGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCACTGTAATTTTCATGAAAGGTGGATGGCTGCGCACTGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCATTTTTCTGTTTTTATTCAGATATTCGTATCTTTGTATCTTCATTTCTTTAGTTCTTTATAGTGCTCTAATTTAACGTATGACGTTAAAAGGTGGATACCTGCGCATTTCTATCATATTGAATATAAATGATAAAAATTCTTTCATGTGATCCGTGTTTTGGTGGAAATACATAAGGTGGATAAACCACTTTACATATTTCCGCCTTTGTGGTTATGATTTCACCATCAGAACTTAAAAACCACAGGTAATGT

AT-rich region

The information of repeat sequences

Motif TGAAAGGTGGATGGGTACGCA

Start	P-value		Site
961	1.73e-13	GGGTACGCAC	TGAAAGGTGGATGGGTACGCA	TTTTTCTGTT
939	1.73e-13	GGCTGCGCAC	TGAAAGGTGGATGGGTACGCA	CTGAAAGGTG
862	1.73e-13	CGCCTCAAAA	TGAAAGGTGGATGGGTACGCA	CTGAAAGGTG
884	6.64e-13	GGGTACGCAC	TGAAAGGTGGATAGGTACGCA	CTGTAATTTT
917	7.85e-13	GTAATTTTCA	TGAAAGGTGGATGGCTGCGCA	CTGAAAGGTG

Motif AACGCTCTBTAHCGCVKHHYGASCGWTTTTWBCGRBTTHG

Start	P-value		Site
117	4.32e-19	ATCGCCTTAA	AACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCG	TTGTAGTCAG
306	5.20e-18	TACCCTCTAA	AACGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCG	CATGGTTTCA
474	9.66e-16	GAAAGGAGAC	ACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAG	TGAGCGAGGA
176	1.84e-15	GCTACGGTTT	AACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTG	TTGCTGTGAT

Motif SCACAG

Start	P-value		Site
1221	9.12e-05	AACTTAAAAA	CCACAG	GTAATGT
686	9.12e-05	GCAGAGTTAT	CCACAG	ATTTTTTGTG
647	9.12e-05	GCAAAGTTAT	CCACAG	GCGCTGTGAG
559	2.02e-04	AGGCACTTAC	GCACAG	TGGTTAAAAA
533	2.02e-04	AAGCGGAATA	GCACAG	GGATTACATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000031	100.0	1233	0	0	1	1233	1	1233	0.0	2278
pORI00000031	97.674	43	1	0	939	981	862	904	3.31e-14	75
pORI00000031	97.674	43	1	0	862	904	939	981	3.31e-14	75
pORI00000702	97.324	1233	32	1	1	1233	1232	1	0.0	2093
pORI00000702	100.0	43	0	0	939	981	372	330	7.12e-16	81
pORI00000702	94.0	50	3	0	916	965	373	324	9.21e-15	77
pORI00000702	97.674	43	1	0	862	904	295	253	3.31e-14	75
pORI00000921	97.495	1038	24	1	198	1233	1	1038	0.0	1772
pORI00000921	100.0	43	0	0	939	981	667	709	7.12e-16	81
pORI00000921	95.745	47	2	0	916	962	666	712	9.21e-15	77
pORI00000921	97.674	43	1	0	862	904	744	786	3.31e-14	75
pORI00001057	97.303	1038	26	1	198	1233	1038	1	0.0	1760
pORI00001057	97.674	43	1	0	862	904	295	253	3.31e-14	75
pORI00001057	97.674	43	1	0	939	981	372	330	3.31e-14	75
pORI00000947	95.292	1062	24	2	198	1233	1062	1	0.0	1661
pORI00000947	95.918	49	2	0	862	910	317	269	7.12e-16	81
pORI00000947	100.0	43	0	0	939	981	394	352	7.12e-16	81
pORI00000947	94.0	50	3	0	916	965	395	346	9.21e-15	77
pORI00000947	97.674	43	1	0	862	904	295	253	3.31e-14	75
pORI00000446	95.472	1038	23	2	198	1233	1	1016	0.0	1635
pORI00000446	97.674	43	1	0	862	904	722	764	3.31e-14	75
pORI00000421	94.706	850	41	4	1	848	1	848	0.0	1317
pORI00000072	99.697	660	2	0	1	660	1061	402	0.0	1208
pORI00000990	95.586	657	27	2	6	660	148	804	0.0	1051
pORI00000834	82.159	880	118	28	116	980	1232	377	0.0	719
pORI00001062	90.573	541	47	3	122	660	1000	462	0.0	713
pORI00001164	81.925	769	105	24	225	980	1124	377	0.0	619
pORI00001144	83.016	683	95	16	225	895	1	674	0.0	599
pORI00001056	83.016	683	95	16	225	895	1124	451	0.0	599
pORI00001020	83.016	683	95	16	225	895	1	674	0.0	599
pORI00001011	83.016	683	95	16	225	895	1124	451	0.0	599
pORI00000595	95.27	148	3	4	1	147	1	145	0.0	231
pORI00000595	92.958	71	3	1	461	531	642	710	1.52e-22	102
pORI00000914	94.595	148	4	3	1	147	1	145	0.0	226
pORI00000914	92.958	71	3	1	461	531	642	710	1.52e-22	102
pORI00000343	92.308	78	6	0	458	535	316	239	2.52e-25	111
pORI00000308	98.361	61	1	0	474	534	743	803	3.27e-24	108
pORI00000094	98.305	59	1	0	474	532	1164	1106	4.22e-23	104
pORI00000093	98.305	59	1	0	474	532	248	190	4.22e-23	104
pORI00000478	92.958	71	3	1	461	531	286	354	1.52e-22	102
pORI00000320	90.789	76	7	0	459	534	799	874	1.52e-22	102
pORI00000315	90.789	76	7	0	459	534	1432	1507	1.52e-22	102
pORI00000312	90.789	76	7	0	459	534	799	874	1.52e-22	102
pORI00000309	90.789	76	7	0	459	534	728	803	1.52e-22	102
pORI00000307	96.667	60	2	0	473	532	938	997	5.46e-22	100
pORI00000116	96.667	60	2	0	473	532	938	997	5.46e-22	100
pORI00000111	95.238	63	3	0	467	529	719	781	5.46e-22	100
pORI00000110	96.667	60	2	0	473	532	2811	2870	5.46e-22	100
pORI00000098	96.667	60	2	0	473	532	938	997	5.46e-22	100
pORI00000095	96.667	60	2	0	473	532	938	997	5.46e-22	100
pORI00000301	89.474	76	8	0	459	534	868	943	7.07e-21	97
pORI00000294	95.082	61	3	0	474	534	428	368	7.07e-21	97
pORI00000292	95.082	61	3	0	474	534	428	368	7.07e-21	97
pORI00000290	95.082	61	3	0	474	534	419	359	7.07e-21	97
pORI00000239	95.082	61	3	0	474	534	242	182	7.07e-21	97
pORI00000224	89.474	76	8	0	459	534	868	943	7.07e-21	97
pORI00000223	89.474	76	8	0	459	534	868	943	7.07e-21	97
pORI00000222	89.474	76	8	0	459	534	868	943	7.07e-21	97
pORI00000097	89.474	76	8	0	459	534	868	943	7.07e-21	97
pORI00000058	89.474	76	8	0	459	534	685	760	7.07e-21	97
pORI00000240	92.424	66	3	2	458	523	1088	1151	9.14e-20	94
pORI00000092	86.957	69	8	1	459	527	868	935	9.21e-15	77