RefSeq NC_010378
DoriC accession number pORI00000031
OriC length 1233 nt
OriC AT content 0.5969
The location of oriC region 33658..34890 nt
Browse in NCBI
OriC map
OriC sequences
AAGCCCTCCGCTTGTCTCATTGGCATAATAGCATCTTTAAAAGCACTCTTAAAAGTGCTTATGTTGAGAAAAACATCAGAACAGGTGAGATATGGCTCTTTCCGACATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCGTTGTAGTCAGCTACGGTTTAACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTGTTGCTGTGATCTGTTGCCATGATCCGGATAGGAGTTCAATCTTGATCAAAATTTCCTCAAGGCAACGACTGTTTTGTAAATACCCTCTAAAACGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCGCATGGTTTCACCATGGTTGTATCGAACGAAGCGGCAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGAGCTGAACTCTTCTGGTTTTGAGAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGAAGCGGAATAGCACAGGGATTACATTAGGCACTTACGCACAGTGGTTAAAAAGTGAGCATATTGTTTTTATGTGTGGTTGTCTTGGTTCAGAGTGATCTGTCCTCCGGGTTTACGCAAAGTTATCCACAGGCGCTGTGAGTTTTTTGTTTTGAGCAGAGTTATCCACAGATTTTTTGTGTTTTTTTGCTTATTAAACTTCTTGTTTTTAAGATCTTAAATGTAGATCGGTAGATCTACTTTAAGATCTTTAACTTACTTTAACTTATTCTGCAAACATTGTGCCAGCTTTTTTATCAATAATTTCATTAAGATAGGTGTTGTTTTTTGTCGCCTCAAAATGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCACTGTAATTTTCATGAAAGGTGGATGGCTGCGCACTGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCATTTTTCTGTTTTTATTCAGATATTCGTATCTTTGTATCTTCATTTCTTTAGTTCTTTATAGTGCTCTAATTTAACGTATGACGTTAAAAGGTGGATACCTGCGCATTTCTATCATATTGAATATAAATGATAAAAATTCTTTCATGTGATCCGTGTTTTGGTGGAAATACATAAGGTGGATAAACCACTTTACATATTTCCGCCTTTGTGGTTATGATTTCACCATCAGAACTTAAAAACCACAGGTAATGT
AAGCCCTCCGCTTGTCTCATTGGCATAATAGCATCTTTAAAAGCACTCTTAAAAGTGCTTATGTTGAGAAAAACATCAGAACAGGTGAGATATGGCTCTTTCCGACATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCGTTGTAGTCAGCTACGGTTTAACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTGTTGCTGTGATCTGTTGCCATGATCCGGATAGGAGTTCAATCTTGATCAAAATTTCCTCAAGGCAACGACTGTTTTGTAAATACCCTCTAAAACGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCGCATGGTTTCACCATGGTTGTATCGAACGAAGCGGCAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGAGCTGAACTCTTCTGGTTTTGAGAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGAAGCGGAATAGCACAGGGATTACATTAGGCACTTACGCACAGTGGTTAAAAAGTGAGCATATTGTTTTTATGTGTGGTTGTCTTGGTTCAGAGTGATCTGTCCTCCGGGTTTACGCAAAGTTATCCACAGGCGCTGTGAGTTTTTTGTTTTGAGCAGAGTTATCCACAGATTTTTTGTGTTTTTTTGCTTATTAAACTTCTTGTTTTTAAGATCTTAAATGTAGATCGGTAGATCTACTTTAAGATCTTTAACTTACTTTAACTTATTCTGCAAACATTGTGCCAGCTTTTTTATCAATAATTTCATTAAGATAGGTGTTGTTTTTTGTCGCCTCAAAATGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCACTGTAATTTTCATGAAAGGTGGATGGCTGCGCACTGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCATTTTTCTGTTTTTATTCAGATATTCGTATCTTTGTATCTTCATTTCTTTAGTTCTTTATAGTGCTCTAATTTAACGTATGACGTTAAAAGGTGGATACCTGCGCATTTCTATCATATTGAATATAAATGATAAAAATTCTTTCATGTGATCCGTGTTTTGGTGGAAATACATAAGGTGGATAAACCACTTTACATATTTCCGCCTTTGTGGTTATGATTTCACCATCAGAACTTAAAAACCACAGGTAATGT

AT-rich region
The information of repeat sequences

Motif TGAAAGGTGGATGGGTACGCA

StartP-valueSite
9611.73e-13GGGTACGCACTGAAAGGTGGATGGGTACGCATTTTTCTGTT
9391.73e-13GGCTGCGCACTGAAAGGTGGATGGGTACGCACTGAAAGGTG
8621.73e-13CGCCTCAAAATGAAAGGTGGATGGGTACGCACTGAAAGGTG
8846.64e-13GGGTACGCACTGAAAGGTGGATAGGTACGCACTGTAATTTT
9177.85e-13GTAATTTTCATGAAAGGTGGATGGCTGCGCACTGAAAGGTG

Motif AACGCTCTBTAHCGCVKHHYGASCGWTTTTWBCGRBTTHG

StartP-valueSite
1174.32e-19ATCGCCTTAAAACGCTCTGTAACGCGTTCTGAGCGTTTTTTCCCGTTTCGTTGTAGTCAG
3065.20e-18TACCCTCTAAAACGCGCTGTATCGCATTCTGAGCGATTTTTTCGATTTCGCATGGTTTCA
4749.66e-16GAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGA
1761.84e-15GCTACGGTTTAACGGTTTTTAACGCCGCTCAACGCTTTTTAGCGGCCTTGTTGCTGTGAT

Motif SCACAG

StartP-valueSite
12219.12e-05AACTTAAAAACCACAGGTAATGT
6869.12e-05GCAGAGTTATCCACAGATTTTTTGTG
6479.12e-05GCAAAGTTATCCACAGGCGCTGTGAG
5592.02e-04AGGCACTTACGCACAGTGGTTAAAAA
5332.02e-04AAGCGGAATAGCACAGGGATTACATT

The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000031 100.0 1233 0 0 1 1233 1 1233 0.0 2278
pORI00000031 97.674 43 1 0 939 981 862 904 3.31e-14 75
pORI00000031 97.674 43 1 0 862 904 939 981 3.31e-14 75
pORI00000702 97.324 1233 32 1 1 1233 1232 1 0.0 2093
pORI00000702 100.0 43 0 0 939 981 372 330 7.12e-16 81
pORI00000702 94.0 50 3 0 916 965 373 324 9.21e-15 77
pORI00000702 97.674 43 1 0 862 904 295 253 3.31e-14 75
pORI00000921 97.495 1038 24 1 198 1233 1 1038 0.0 1772
pORI00000921 100.0 43 0 0 939 981 667 709 7.12e-16 81
pORI00000921 95.745 47 2 0 916 962 666 712 9.21e-15 77
pORI00000921 97.674 43 1 0 862 904 744 786 3.31e-14 75
pORI00001057 97.303 1038 26 1 198 1233 1038 1 0.0 1760
pORI00001057 97.674 43 1 0 862 904 295 253 3.31e-14 75
pORI00001057 97.674 43 1 0 939 981 372 330 3.31e-14 75
pORI00000947 95.292 1062 24 2 198 1233 1062 1 0.0 1661
pORI00000947 95.918 49 2 0 862 910 317 269 7.12e-16 81
pORI00000947 100.0 43 0 0 939 981 394 352 7.12e-16 81
pORI00000947 94.0 50 3 0 916 965 395 346 9.21e-15 77
pORI00000947 97.674 43 1 0 862 904 295 253 3.31e-14 75
pORI00000446 95.472 1038 23 2 198 1233 1 1016 0.0 1635
pORI00000446 97.674 43 1 0 862 904 722 764 3.31e-14 75
pORI00000421 94.706 850 41 4 1 848 1 848 0.0 1317
pORI00000072 99.697 660 2 0 1 660 1061 402 0.0 1208
pORI00000990 95.586 657 27 2 6 660 148 804 0.0 1051
pORI00000834 82.159 880 118 28 116 980 1232 377 0.0 719
pORI00001062 90.573 541 47 3 122 660 1000 462 0.0 713
pORI00001164 81.925 769 105 24 225 980 1124 377 0.0 619
pORI00001144 83.016 683 95 16 225 895 1 674 0.0 599
pORI00001056 83.016 683 95 16 225 895 1124 451 0.0 599
pORI00001020 83.016 683 95 16 225 895 1 674 0.0 599
pORI00001011 83.016 683 95 16 225 895 1124 451 0.0 599
pORI00000595 95.27 148 3 4 1 147 1 145 0.0 231
pORI00000595 92.958 71 3 1 461 531 642 710 1.52e-22 102
pORI00000914 94.595 148 4 3 1 147 1 145 0.0 226
pORI00000914 92.958 71 3 1 461 531 642 710 1.52e-22 102
pORI00000343 92.308 78 6 0 458 535 316 239 2.52e-25 111
pORI00000308 98.361 61 1 0 474 534 743 803 3.27e-24 108
pORI00000094 98.305 59 1 0 474 532 1164 1106 4.22e-23 104
pORI00000093 98.305 59 1 0 474 532 248 190 4.22e-23 104
pORI00000478 92.958 71 3 1 461 531 286 354 1.52e-22 102
pORI00000320 90.789 76 7 0 459 534 799 874 1.52e-22 102
pORI00000315 90.789 76 7 0 459 534 1432 1507 1.52e-22 102
pORI00000312 90.789 76 7 0 459 534 799 874 1.52e-22 102
pORI00000309 90.789 76 7 0 459 534 728 803 1.52e-22 102
pORI00000307 96.667 60 2 0 473 532 938 997 5.46e-22 100
pORI00000116 96.667 60 2 0 473 532 938 997 5.46e-22 100
pORI00000111 95.238 63 3 0 467 529 719 781 5.46e-22 100
pORI00000110 96.667 60 2 0 473 532 2811 2870 5.46e-22 100
pORI00000098 96.667 60 2 0 473 532 938 997 5.46e-22 100
pORI00000095 96.667 60 2 0 473 532 938 997 5.46e-22 100
pORI00000301 89.474 76 8 0 459 534 868 943 7.07e-21 97
pORI00000294 95.082 61 3 0 474 534 428 368 7.07e-21 97
pORI00000292 95.082 61 3 0 474 534 428 368 7.07e-21 97
pORI00000290 95.082 61 3 0 474 534 419 359 7.07e-21 97
pORI00000239 95.082 61 3 0 474 534 242 182 7.07e-21 97
pORI00000224 89.474 76 8 0 459 534 868 943 7.07e-21 97
pORI00000223 89.474 76 8 0 459 534 868 943 7.07e-21 97
pORI00000222 89.474 76 8 0 459 534 868 943 7.07e-21 97
pORI00000097 89.474 76 8 0 459 534 868 943 7.07e-21 97
pORI00000058 89.474 76 8 0 459 534 685 760 7.07e-21 97
pORI00000240 92.424 66 3 2 458 523 1088 1151 9.14e-20 94
pORI00000092 86.957 69 8 1 459 527 868 935 9.21e-15 77