DoriC

RefSeq

NZ_CP024664

DoriC accession number

pORI00001057

OriC length

1038 nt

OriC AT content

0.6079

The location of oriC region

29442..30479 nt

Browse in NCBI

OriC map

OriC sequences

ACATTACCTGTGTTTTTTAAGTTCTGATGGTGAAATCATAACCACAAAAGCGGAAATGTGTAAAGTGGTTTATCCACCTTATAGATTTCCACCAAAACTCGGATCACATGAAAGAATTTTTATCATTTATATTCAATATGATAGAAATGCGCAGGCATCCACCTTTTAACGTCATACGTTAAATTAGAGCACTATAAAGAACTAAAGAAATGAAGATGCAAAGATACGAATATCTGAATAAAAACAGAAAAATGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCAGTGCGCAGCCATCCACCTTTCATGAAAATTACAGTGCGTATCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCATTTTGAGGCGACAAAAAACAACACCTATCTTAATGAAATTATTGATAAATAACTTGGCACAATGTTTGCAAAATAAGTTAAAATAAGTTAAAGATCTTAAAGTAGATCTACCGATCTACATTTAAGATCTTAAAAACAAGAAGTTTAATAAGCAAAAAAACACAAAAAATCTGTGGATAACTCTGCTCAAAACAAAAAATTCACAGTGCCTGTGGATAACTTTGCGTAAACCCGGAGGACAGATCACGCTGAACCAGGACAACCACACATAAAAACAATATGCTCGCTTTTTAACCACTGTGCGTAAGTGCCTGATGTAATCCCTGTGCTATTCCGCTTCCTCGCTCACTAACTCGCTACGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTCCTTTCTCAAAACCAGAAGAGTTCAGATCATACGATCCGTTGATTGATCCTTTTTGGATCTTTCACTGAGAAGCCCTGAATCGCTTTCTGCCGCTTCGTTCGATACAACCATGGTTAAAAACCATGCGAAATCGAAAAAATCACTCAGAATGCGATACAGCGCGTTTTAGAGGGTATTTACAAAACAGTCGTTGCCTTGAGGAAATTTTGATCAAAATTGAACTTCTATCCGGATCATGGCAACAGATCACAGCAACAAGGCCGCTAAAAAGCG

AT-rich region

The information of repeat sequences

Motif GTGCGTACCCATCCACCTTTC

Start	P-value		Site
351	9.63e-14	CCACCTTTCA	GTGCGTACCCATCCACCTTTC	ATTTTGAGGC
274	9.63e-14	CCACCTTTCA	GTGCGTACCCATCCACCTTTC	AGTGCGCAGC
329	3.65e-13	GAAAATTACA	GTGCGTATCCATCCACCTTTC	AGTGCGTACC
296	6.20e-13	CCACCTTTCA	GTGCGCAGCCATCCACCTTTC	ATGAAAATTA
252	6.20e-13	AAACAGAAAA	ATGCGTACCCATCCACCTTTC	AGTGCGTACC

Motif TGTKRAHAACTNTGCGHAA

Start	P-value		Site
583	1.43e-11	TCACAGTGCC	TGTGGATAACTTTGCGTAA	ACCCGGAGGA
544	9.61e-10	ACAAAAAATC	TGTGGATAACTCTGCTCAA	AACAAAAAAT
661	6.07e-09	TATGCTCGCT	TTTTAACCACTGTGCGTAA	GTGCCTGATG
877	1.68e-08	ATACAACCAT	GGTTAAAAACCATGCGAAA	TCGAAAAAAT

Motif TTCNGCTBCBDCGHTCVVTWNMTCSHT

Start	P-value		Site
742	1.35e-13	CGCTCGGTCG	TTCGGCTGCGGCGAGCGGTGTCTCCTT	TCTCAAAACC
704	1.98e-11	CCCTGTGCTA	TTCCGCTTCCTCGCTCACTAACTCGCT	ACGCTCGGTC
850	2.57e-11	CTGAATCGCT	TTCTGCCGCTTCGTTCGATACAACCAT	GGTTAAAAAC
786	3.03e-10	ACCAGAAGAG	TTCAGATCATACGATCCGTTGATTGAT	CCTTTTTGGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00001057	100.0	1038	0	0	1	1038	1	1038	0.0	1917
pORI00001057	97.674	43	1	0	330	372	253	295	2.78e-14	75
pORI00001057	97.674	43	1	0	253	295	330	372	2.78e-14	75
pORI00000921	99.422	1038	6	0	1	1038	1038	1	0.0	1884
pORI00000921	100.0	43	0	0	253	295	709	667	5.97e-16	81
pORI00000921	95.745	47	2	0	272	318	712	666	7.73e-15	77
pORI00000921	97.674	43	1	0	330	372	786	744	2.78e-14	75
pORI00000947	96.987	1062	8	2	1	1038	1	1062	0.0	1762
pORI00000947	95.918	49	2	0	324	372	269	317	5.97e-16	81
pORI00000947	100.0	43	0	0	253	295	352	394	5.97e-16	81
pORI00000947	94.0	50	3	0	269	318	346	395	7.73e-15	77
pORI00000947	97.674	43	1	0	330	372	253	295	2.78e-14	75
pORI00000031	97.303	1038	26	1	1	1038	1233	198	0.0	1760
pORI00000031	97.674	43	1	0	253	295	904	862	2.78e-14	75
pORI00000031	97.674	43	1	0	330	372	981	939	2.78e-14	75
pORI00000446	97.399	1038	5	1	1	1038	1016	1	0.0	1748
pORI00000446	97.674	43	1	0	330	372	764	722	2.78e-14	75
pORI00000702	95.954	1038	40	1	1	1038	1	1036	0.0	1683
pORI00000702	100.0	43	0	0	253	295	330	372	5.97e-16	81
pORI00000702	94.0	50	3	0	269	318	324	373	7.73e-15	77
pORI00000702	97.674	43	1	0	330	372	253	295	2.78e-14	75
pORI00000421	93.578	654	38	4	386	1038	848	198	0.0	972
pORI00000072	97.021	470	12	1	569	1038	397	864	0.0	789
pORI00000990	94.468	470	25	1	569	1038	809	341	0.0	723
pORI00000834	82.55	808	107	27	254	1038	355	1151	0.0	680
pORI00001062	92.34	470	34	2	569	1038	457	924	0.0	667
pORI00001164	82.074	781	106	27	254	1011	355	1124	0.0	636
pORI00001144	83.528	686	92	16	337	1011	676	1	0.0	621
pORI00001056	83.382	692	94	16	331	1011	443	1124	0.0	621
pORI00001020	83.528	686	92	16	337	1011	676	1	0.0	621
pORI00001011	83.382	692	94	16	331	1011	443	1124	0.0	621
pORI00000343	92.308	78	6	0	699	776	239	316	2.12e-25	111
pORI00000308	98.361	61	1	0	700	760	803	743	2.74e-24	108
pORI00000094	98.305	59	1	0	702	760	1106	1164	3.54e-23	104
pORI00000093	98.305	59	1	0	702	760	190	248	3.54e-23	104
pORI00000914	92.958	71	3	1	703	773	710	642	1.27e-22	102
pORI00000595	92.958	71	3	1	703	773	710	642	1.27e-22	102
pORI00000478	92.958	71	3	1	703	773	354	286	1.27e-22	102
pORI00000320	90.789	76	7	0	700	775	874	799	1.27e-22	102
pORI00000315	90.789	76	7	0	700	775	1507	1432	1.27e-22	102
pORI00000312	90.789	76	7	0	700	775	874	799	1.27e-22	102
pORI00000309	90.789	76	7	0	700	775	803	728	1.27e-22	102
pORI00000307	96.667	60	2	0	702	761	997	938	4.58e-22	100
pORI00000116	96.667	60	2	0	702	761	997	938	4.58e-22	100
pORI00000111	95.238	63	3	0	705	767	781	719	4.58e-22	100
pORI00000110	96.667	60	2	0	702	761	2870	2811	4.58e-22	100
pORI00000098	96.667	60	2	0	702	761	997	938	4.58e-22	100
pORI00000095	96.667	60	2	0	702	761	997	938	4.58e-22	100
pORI00000301	89.474	76	8	0	700	775	943	868	5.93e-21	97
pORI00000294	95.082	61	3	0	700	760	368	428	5.93e-21	97
pORI00000292	95.082	61	3	0	700	760	368	428	5.93e-21	97
pORI00000290	95.082	61	3	0	700	760	359	419	5.93e-21	97
pORI00000239	95.082	61	3	0	700	760	182	242	5.93e-21	97
pORI00000224	89.474	76	8	0	700	775	943	868	5.93e-21	97
pORI00000223	89.474	76	8	0	700	775	943	868	5.93e-21	97
pORI00000222	89.474	76	8	0	700	775	943	868	5.93e-21	97
pORI00000097	89.474	76	8	0	700	775	943	868	5.93e-21	97
pORI00000058	89.474	76	8	0	700	775	760	685	5.93e-21	97
pORI00000240	92.424	66	3	2	711	776	1151	1088	7.67e-20	94
pORI00000092	86.957	69	8	1	707	775	935	868	7.73e-15	77