RefSeq NC_021665
DoriC accession number pORI00000293
OriC length 1133 nt
OriC AT content 0.6487
The location of oriC region 5056..6188 nt
Browse in NCBI
OriC map
OriC sequences
CTATTTAGTTATTTGTTTGGTCACTTATAACTTTAACAGATGGGGTTTTTCTGTGCAACCAATTTTAAGGGTTTTCAATACTTTAAAACACATACATACCAACACTTCAACGCACCTTTCAGCAACTAAAATAAAAATGACGTTATTTCTATATGTATCAAGAATAGAAAGAACTCGTTTTTCGCTACGCTCAAAACGCAAAAAAAGCACTCATTCGAGTGCTTTTTCTTATCGCTCCAAATCATGCGATTTTTTCCTCTTTGCTTTTCTTTGCTCACGAAGTTCTCGATCACGCTGCAAAACATCTTGAAGCGAAAAAGTATTCTTCTTTTCTTCCGATCGCTCATGCTGACGCACGAAAAGCCCTCTAGGCGCATAGGAACAACTCCTAAATGCATGTGAGGGGTTTTCTCGTCCATGTGAACAGTCGCATACGCAATATTTTGTTTCCCATAGCTAGTAAGCTTGGATCCTCGCGAGGCCGGCCAGTATTCTGACATGGGTGTATCAATAACCCATGCGTTTCCGTATTGTATCGGAATGGTTTCGGACAGGGCGGTGGGAATAGACATGGAAAAGATTTTTTTGCCCGAGGATGCATTGATAAAGTATTTCTTTTCCGAAAGAGAGGAAAAGATTCTAAAGAGTTTTGGAAATACTGATGAATATTGTGTGCAGAGTACAATTCTATGGACAAGAAAAGAGGCTTTGTCAAAACTTTTTCGTCTGGGAATGAGGATGGATTTTAAAAAGCTGGATACTTTGGAGGACGAGGTGGTTTTTCAGGAAACAAACAGGGCGCGTCTGTTTTCTTTTATATGCAATAATTACTGTATCTCTCTGGCATTGCCAGGTTTTAATAAAGATTAAAATTATTGACTAGAAATAAAAAAATTGTCCATAATATTAATGGACAAAAAAACAAAGAATTACATCAAAGGAAGATAAAAATACTTTGTTAAAAAATTAATTATTTTTTATCTAAACTATTGAAAATGAAAATAAAATAATATAAAATGAATCATAGTGCAAGAGATACTTGCCAGAGGATGAATATTTTACTGCATTCATGCTTTATGGCAGCTAATAGAGGCATTAAATTAAATTTTAATTTACAATAGGAGGCGATATTA
CTATTTAGTTATTTGTTTGGTCACTTATAACTTTAACAGATGGGGTTTTTCTGTGCAACCAATTTTAAGGGTTTTCAATACTTTAAAACACATACATACCAACACTTCAACGCACCTTTCAGCAACTAAAATAAAAATGACGTTATTTCTATATGTATCAAGAATAGAAAGAACTCGTTTTTCGCTACGCTCAAAACGCAAAAAAAGCACTCATTCGAGTGCTTTTTCTTATCGCTCCAAATCATGCGATTTTTTCCTCTTTGCTTTTCTTTGCTCACGAAGTTCTCGATCACGCTGCAAAACATCTTGAAGCGAAAAAGTATTCTTCTTTTCTTCCGATCGCTCATGCTGACGCACGAAAAGCCCTCTAGGCGCATAGGAACAACTCCTAAATGCATGTGAGGGGTTTTCTCGTCCATGTGAACAGTCGCATACGCAATATTTTGTTTCCCATAGCTAGTAAGCTTGGATCCTCGCGAGGCCGGCCAGTATTCTGACATGGGTGTATCAATAACCCATGCGTTTCCGTATTGTATCGGAATGGTTTCGGACAGGGCGGTGGGAATAGACATGGAAAAGATTTTTTTGCCCGAGGATGCATTGATAAAGTATTTCTTTTCCGAAAGAGAGGAAAAGATTCTAAAGAGTTTTGGAAATACTGATGAATATTGTGTGCAGAGTACAATTCTATGGACAAGAAAAGAGGCTTTGTCAAAACTTTTTCGTCTGGGAATGAGGATGGATTTTAAAAAGCTGGATACTTTGGAGGACGAGGTGGTTTTTCAGGAAACAAACAGGGCGCGTCTGTTTTCTTTTATATGCAATAATTACTGTATCTCTCTGGCATTGCCAGGTTTTAATAAAGATTAAAATTATTGACTAGAAATAAAAAAATTGTCCATAATATTAATGGACAAAAAAACAAAGAATTACATCAAAGGAAGATAAAAATACTTTGTTAAAAAATTAATTATTTTTTATCTAAACTATTGAAAATGAAAATAAAATAATATAAAATGAATCATAGTGCAAGAGATACTTGCCAGAGGATGAATATTTTACTGCATTCATGCTTTATGGCAGCTAATAGAGGCATTAAATTAAATTTTAATTTACAATAGGAGGCGATATTA
AT-rich region
The information of repeat sequences

Motif TBGYTTTTCBTDDCGCWCVAA

StartP-valueSite
1752.27e-10TAGAAAGAACTCGTTTTTCGCTACGCTCAAAACGCAAAAAA
3405.44e-10TTTCTTCCGATCGCTCATGCTGACGCACGAAAAGCCCTCTA
2615.44e-10TTTTTCCTCTTTGCTTTTCTTTGCTCACGAAGTTCTCGATC
2201.99e-09CTCATTCGAGTGCTTTTTCTTATCGCTCCAAATCATGCGAT

Motif GGAWACWHDSRRGGMSSRBSWGKWTTYT

StartP-valueSite
4684.19e-16TAGTAAGCTTGGATCCTCGCGAGGCCGGCCAGTATTCTGACATGGGTG
7866.21e-13TGGTTTTTCAGGAAACAAACAGGGCGCGTCTGTTTTCTTTTATATGCA
7561.25e-12TTAAAAAGCTGGATACTTTGGAGGACGAGGTGGTTTTTCAGGAAACAA

Motif RRGRTTTTTTYGTCY

StartP-valueSite
4034.02e-09ATGCATGTGAGGGGTTTTCTCGTCCATGTGAACAG
2461.96e-07TCCAAATCATGCGATTTTTTCCTCTTTGCTTTTCT
422.69e-07TTTAACAGATGGGGTTTTTCTGTGCAACCAATTTT
5773.65e-07AGACATGGAAAAGATTTTTTTGCCCGAGGATGCAT
7141.66e-06AGGCTTTGTCAAAACTTTTTCGTCTGGGAATGAGG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000293 100.0 1133 0 0 1 1133 1 1133 0.0 2093
pORI00000291 100.0 1133 0 0 1 1133 1 1133 0.0 2093
pORI00000289 100.0 1133 0 0 1 1133 1 1133 0.0 2093
pORI00000300 96.943 229 5 2 1 228 228 1 0.0 383
pORI00000236 98.851 174 2 0 1 174 1 174 0.0 311
pORI00000224 98.276 174 3 0 1 174 1776 1603 0.0 305
pORI00000223 98.276 174 3 0 1 174 2041 1868 0.0 305