DoriC

RefSeq

NZ_CP028715

DoriC accession number

pORI00001164

OriC length

1124 nt

OriC AT content

0.5934

The location of oriC region

40010..41133 nt

Browse in NCBI

OriC map

OriC sequences

TGTCTATTCCTTAGAACAACCATTCATACACAGAGTATTCTAAAAGGTGGATTATGTAAAGTGGATTTATCCACCTTTATGATTCCACCTTTAAACAAGATATATACCTGCTCTTAGCAGAATATAATCACCTTAATTATCAATATATTATACAGATCAAAACAACGGCACAGCCGTCCACCTTTCACAATTCAGAAAACTCAATTCAAACGGCATACCCATCCACCTTTCGATAAAAAAGCGCCAAGCGCACAAAAAATAGGCGTATGGTTATTTTTCAAATAGTTACGTAGCATGTAACCATGACAACAGTTTGATCTCATTATGAGATCGATATGACGGCAACACCTGACGGCATAGCCATCCACCTTTCACGGCATAACCATCCACCTTTCGCGGCATAGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCGCGGCATGGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCACGTGAGCGTCATGTGAAAAATTACGCGTAATCTACTGAAAATAAAAGACAAAAAATATTGGCATTGATTTTGCAAAAGTATTTTAAGTTTCTAAGATCTTAAAGTAGATCTAAAGATCTACATTTAAGATCTAAAGTTTAATAAGTGTTAGAAGCAAAAAAACACAAAAAATCTGTGGATAACTCAGCCGAAAATTACGCATTCACAATTTCTGTGGATAACTCGTTTTGTTAGCAGAGGACAGATCACTTTGAACCAGAACAGCAGCACTTGAAAACGATGTGCTTATTTTTCAACCACTGCGCGTAAGTGCCTGATGTTAACCCGCCGCAATTCCGCTTCCTCGCTCACTAACTCGCTACGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTCCTTTCTCAAAATCTAAAGAAGTCAGATCATACGATCCGTTGATTGATCCTTTTTGGATCTTTCACTGAGAAGCCCTGAATCGCTTTCTGCCGCTTCGTTCGATAAAACCATGAGGAAAACCATGCGAGATCGAAAAAATCACTCAGAATGCGATACAGCACGTTTTAGAGGGTATTCACAAAACAGTCGTTCCCTTGAGGAAATTTTGATCAAGCTTGAACTACTATCCGGATCATGACAACAGA

AT-rich region

The information of repeat sequences

Motif CGGCATAGCCATCCACCTTTCACGRCATARCCATCCACCTT

Start	P-value		Site
397	1.66e-25	CCACCTTTCG	CGGCATAGCCATCCACCTTTCACGGCATAGCCATCCACCTT	TCGCGGCATG
441	7.56e-25	CCACCTTTCG	CGGCATGGCCATCCACCTTTCACGGCATAGCCATCCACCTT	TCACGTGAGC
353	1.90e-24	CAACACCTGA	CGGCATAGCCATCCACCTTTCACGGCATAACCATCCACCTT	TCGCGGCATA
211	6.36e-17	TCAATTCAAA	CGGCATACCCATCCACCTTTCGATAAAAAAGCGCCAAGCGC	ACAAAAAATA
166	9.99e-17	ATCAAAACAA	CGGCACAGCCGTCCACCTTTCACAATTCAGAAAACTCAATT	CAAACGGCAT

Motif GTGGAT

Start	P-value		Site
698	1.16e-04	CACAATTTCT	GTGGAT	AACTCGTTTT
659	1.16e-04	CAAAAAATCT	GTGGAT	AACTCAGCCG
61	1.16e-04	ATTATGTAAA	GTGGAT	TTATCCACCT
47	1.16e-04	ATTCTAAAAG	GTGGAT	TATGTAAAGT

Motif TTCBGCYKCBKCGHKCRVT

Start	P-value		Site
856	2.32e-11	CGCTCGGTCG	TTCGGCTGCGGCGAGCGGT	GTCTCCTTTC
964	4.56e-10	CTGAATCGCT	TTCTGCCGCTTCGTTCGAT	AAAACCATGA
818	1.57e-09	CCCGCCGCAA	TTCCGCTTCCTCGCTCACT	AACTCGCTAC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00001164	100.0	1124	0	0	1	1124	1	1124	0.0	2076
pORI00001164	97.701	87	2	0	397	483	353	439	4.87e-37	150
pORI00001164	97.701	87	2	0	353	439	397	483	4.87e-37	150
pORI00000834	100.0	1124	0	0	1	1124	1	1124	0.0	2076
pORI00000834	97.701	87	2	0	397	483	353	439	4.87e-37	150
pORI00000834	97.701	87	2	0	353	439	397	483	4.87e-37	150
pORI00001056	98.577	1124	16	0	1	1124	1	1124	0.0	1988
pORI00001056	96.552	87	3	0	353	439	397	483	2.26e-35	145
pORI00001056	95.402	87	4	0	397	483	353	439	1.05e-33	139
pORI00001056	97.674	43	1	0	353	395	441	483	3.01e-14	75
pORI00001056	95.349	43	2	0	441	483	353	395	1.4e-12	69
pORI00001020	98.577	1124	16	0	1	1124	1124	1	0.0	1988
pORI00001020	95.556	90	4	0	353	442	728	639	2.26e-35	145
pORI00001020	94.444	90	5	0	397	486	772	683	1.05e-33	139
pORI00001020	95.652	46	2	0	353	398	684	639	3.01e-14	75
pORI00001020	93.478	46	3	0	441	486	772	727	1.4e-12	69
pORI00001011	98.577	1124	16	0	1	1124	1	1124	0.0	1988
pORI00001011	96.552	87	3	0	353	439	397	483	2.26e-35	145
pORI00001011	95.402	87	4	0	397	483	353	439	1.05e-33	139
pORI00001011	97.674	43	1	0	353	395	441	483	3.01e-14	75
pORI00001011	95.349	43	2	0	441	483	353	395	1.4e-12	69
pORI00001144	98.489	1125	16	1	1	1124	1125	1	0.0	1982
pORI00001144	95.556	90	4	0	353	442	728	639	2.26e-35	145
pORI00001144	94.444	90	5	0	397	486	772	683	1.05e-33	139
pORI00001144	95.652	46	2	0	353	398	684	639	3.01e-14	75
pORI00001144	93.478	46	3	0	441	486	772	727	1.4e-12	69
pORI00001057	82.074	781	106	27	355	1124	254	1011	0.0	636
pORI00000921	82.353	765	99	23	383	1124	779	28	0.0	632
pORI00000947	81.738	794	109	22	355	1124	254	1035	0.0	630
pORI00000702	82.185	769	103	22	377	1124	254	1009	0.0	630
pORI00000421	85.906	596	74	9	534	1124	815	225	0.0	627
pORI00000446	87.138	552	64	5	577	1124	576	28	0.0	619
pORI00000031	82.045	763	103	24	383	1124	974	225	0.0	619
pORI00000072	90.594	404	37	1	721	1124	435	837	0.0	534
pORI00001062	90.099	404	39	1	721	1124	495	897	0.0	523
pORI00000990	88.861	404	45	0	721	1124	771	368	0.0	497
pORI00000343	93.151	73	5	0	818	890	244	316	2.97e-24	108
pORI00000308	95.455	66	3	0	809	874	808	743	1.07e-23	106
pORI00000914	92.958	71	3	1	817	887	710	642	1.38e-22	102
pORI00000595	92.958	71	3	1	817	887	710	642	1.38e-22	102
pORI00000478	92.958	71	3	1	817	887	354	286	1.38e-22	102
pORI00000094	98.276	58	1	0	817	874	1107	1164	1.38e-22	102
pORI00000093	98.276	58	1	0	817	874	191	248	1.38e-22	102
pORI00000320	91.667	72	6	0	818	889	870	799	4.97e-22	100
pORI00000315	91.667	72	6	0	818	889	1503	1432	4.97e-22	100
pORI00000312	91.667	72	6	0	818	889	870	799	4.97e-22	100
pORI00000309	91.667	72	6	0	818	889	799	728	4.97e-22	100
pORI00000111	95.238	63	3	0	819	881	781	719	4.97e-22	100
pORI00000307	96.61	59	2	0	817	875	996	938	1.79e-21	99
pORI00000116	96.61	59	2	0	817	875	996	938	1.79e-21	99
pORI00000110	96.61	59	2	0	817	875	2869	2811	1.79e-21	99
pORI00000098	96.61	59	2	0	817	875	996	938	1.79e-21	99
pORI00000095	96.61	59	2	0	817	875	996	938	1.79e-21	99
pORI00000301	90.278	72	7	0	818	889	939	868	2.31e-20	95
pORI00000294	96.491	57	2	0	818	874	372	428	2.31e-20	95
pORI00000292	96.491	57	2	0	818	874	372	428	2.31e-20	95
pORI00000290	96.491	57	2	0	818	874	363	419	2.31e-20	95
pORI00000239	96.491	57	2	0	818	874	186	242	2.31e-20	95
pORI00000224	90.278	72	7	0	818	889	939	868	2.31e-20	95
pORI00000223	90.278	72	7	0	818	889	939	868	2.31e-20	95
pORI00000222	90.278	72	7	0	818	889	939	868	2.31e-20	95
pORI00000097	90.278	72	7	0	818	889	939	868	2.31e-20	95
pORI00000058	90.278	72	7	0	818	889	756	685	2.31e-20	95
pORI00000240	92.424	66	3	2	825	890	1151	1088	8.32e-20	94
pORI00000092	86.957	69	8	1	821	889	935	868	8.38e-15	77