RefSeq NZ_CP028715
DoriC accession number pORI00001164
OriC length 1124 nt
OriC AT content 0.5934
The location of oriC region 40010..41133 nt
Browse in NCBI
OriC map
OriC sequences
TGTCTATTCCTTAGAACAACCATTCATACACAGAGTATTCTAAAAGGTGGATTATGTAAAGTGGATTTATCCACCTTTATGATTCCACCTTTAAACAAGATATATACCTGCTCTTAGCAGAATATAATCACCTTAATTATCAATATATTATACAGATCAAAACAACGGCACAGCCGTCCACCTTTCACAATTCAGAAAACTCAATTCAAACGGCATACCCATCCACCTTTCGATAAAAAAGCGCCAAGCGCACAAAAAATAGGCGTATGGTTATTTTTCAAATAGTTACGTAGCATGTAACCATGACAACAGTTTGATCTCATTATGAGATCGATATGACGGCAACACCTGACGGCATAGCCATCCACCTTTCACGGCATAACCATCCACCTTTCGCGGCATAGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCGCGGCATGGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCACGTGAGCGTCATGTGAAAAATTACGCGTAATCTACTGAAAATAAAAGACAAAAAATATTGGCATTGATTTTGCAAAAGTATTTTAAGTTTCTAAGATCTTAAAGTAGATCTAAAGATCTACATTTAAGATCTAAAGTTTAATAAGTGTTAGAAGCAAAAAAACACAAAAAATCTGTGGATAACTCAGCCGAAAATTACGCATTCACAATTTCTGTGGATAACTCGTTTTGTTAGCAGAGGACAGATCACTTTGAACCAGAACAGCAGCACTTGAAAACGATGTGCTTATTTTTCAACCACTGCGCGTAAGTGCCTGATGTTAACCCGCCGCAATTCCGCTTCCTCGCTCACTAACTCGCTACGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTCCTTTCTCAAAATCTAAAGAAGTCAGATCATACGATCCGTTGATTGATCCTTTTTGGATCTTTCACTGAGAAGCCCTGAATCGCTTTCTGCCGCTTCGTTCGATAAAACCATGAGGAAAACCATGCGAGATCGAAAAAATCACTCAGAATGCGATACAGCACGTTTTAGAGGGTATTCACAAAACAGTCGTTCCCTTGAGGAAATTTTGATCAAGCTTGAACTACTATCCGGATCATGACAACAGA
TGTCTATTCCTTAGAACAACCATTCATACACAGAGTATTCTAAAAGGTGGATTATGTAAAGTGGATTTATCCACCTTTATGATTCCACCTTTAAACAAGATATATACCTGCTCTTAGCAGAATATAATCACCTTAATTATCAATATATTATACAGATCAAAACAACGGCACAGCCGTCCACCTTTCACAATTCAGAAAACTCAATTCAAACGGCATACCCATCCACCTTTCGATAAAAAAGCGCCAAGCGCACAAAAAATAGGCGTATGGTTATTTTTCAAATAGTTACGTAGCATGTAACCATGACAACAGTTTGATCTCATTATGAGATCGATATGACGGCAACACCTGACGGCATAGCCATCCACCTTTCACGGCATAACCATCCACCTTTCGCGGCATAGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCGCGGCATGGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCACGTGAGCGTCATGTGAAAAATTACGCGTAATCTACTGAAAATAAAAGACAAAAAATATTGGCATTGATTTTGCAAAAGTATTTTAAGTTTCTAAGATCTTAAAGTAGATCTAAAGATCTACATTTAAGATCTAAAGTTTAATAAGTGTTAGAAGCAAAAAAACACAAAAAATCTGTGGATAACTCAGCCGAAAATTACGCATTCACAATTTCTGTGGATAACTCGTTTTGTTAGCAGAGGACAGATCACTTTGAACCAGAACAGCAGCACTTGAAAACGATGTGCTTATTTTTCAACCACTGCGCGTAAGTGCCTGATGTTAACCCGCCGCAATTCCGCTTCCTCGCTCACTAACTCGCTACGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTCCTTTCTCAAAATCTAAAGAAGTCAGATCATACGATCCGTTGATTGATCCTTTTTGGATCTTTCACTGAGAAGCCCTGAATCGCTTTCTGCCGCTTCGTTCGATAAAACCATGAGGAAAACCATGCGAGATCGAAAAAATCACTCAGAATGCGATACAGCACGTTTTAGAGGGTATTCACAAAACAGTCGTTCCCTTGAGGAAATTTTGATCAAGCTTGAACTACTATCCGGATCATGACAACAGA

AT-rich region
The information of repeat sequences

Motif CGGCATAGCCATCCACCTTTCACGRCATARCCATCCACCTT

StartP-valueSite
3971.66e-25CCACCTTTCGCGGCATAGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCGCGGCATG
4417.56e-25CCACCTTTCGCGGCATGGCCATCCACCTTTCACGGCATAGCCATCCACCTTTCACGTGAGC
3531.90e-24CAACACCTGACGGCATAGCCATCCACCTTTCACGGCATAACCATCCACCTTTCGCGGCATA
2116.36e-17TCAATTCAAACGGCATACCCATCCACCTTTCGATAAAAAAGCGCCAAGCGCACAAAAAATA
1669.99e-17ATCAAAACAACGGCACAGCCGTCCACCTTTCACAATTCAGAAAACTCAATTCAAACGGCAT

Motif GTGGAT

StartP-valueSite
6981.16e-04CACAATTTCTGTGGATAACTCGTTTT
6591.16e-04CAAAAAATCTGTGGATAACTCAGCCG
611.16e-04ATTATGTAAAGTGGATTTATCCACCT
471.16e-04ATTCTAAAAGGTGGATTATGTAAAGT

Motif TTCBGCYKCBKCGHKCRVT

StartP-valueSite
8562.32e-11CGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTCCTTTC
9644.56e-10CTGAATCGCTTTCTGCCGCTTCGTTCGATAAAACCATGA
8181.57e-09CCCGCCGCAATTCCGCTTCCTCGCTCACTAACTCGCTAC

The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00001164 100.0 1124 0 0 1 1124 1 1124 0.0 2076
pORI00001164 97.701 87 2 0 397 483 353 439 4.87e-37 150
pORI00001164 97.701 87 2 0 353 439 397 483 4.87e-37 150
pORI00000834 100.0 1124 0 0 1 1124 1 1124 0.0 2076
pORI00000834 97.701 87 2 0 397 483 353 439 4.87e-37 150
pORI00000834 97.701 87 2 0 353 439 397 483 4.87e-37 150
pORI00001056 98.577 1124 16 0 1 1124 1 1124 0.0 1988
pORI00001056 96.552 87 3 0 353 439 397 483 2.26e-35 145
pORI00001056 95.402 87 4 0 397 483 353 439 1.05e-33 139
pORI00001056 97.674 43 1 0 353 395 441 483 3.01e-14 75
pORI00001056 95.349 43 2 0 441 483 353 395 1.4e-12 69
pORI00001020 98.577 1124 16 0 1 1124 1124 1 0.0 1988
pORI00001020 95.556 90 4 0 353 442 728 639 2.26e-35 145
pORI00001020 94.444 90 5 0 397 486 772 683 1.05e-33 139
pORI00001020 95.652 46 2 0 353 398 684 639 3.01e-14 75
pORI00001020 93.478 46 3 0 441 486 772 727 1.4e-12 69
pORI00001011 98.577 1124 16 0 1 1124 1 1124 0.0 1988
pORI00001011 96.552 87 3 0 353 439 397 483 2.26e-35 145
pORI00001011 95.402 87 4 0 397 483 353 439 1.05e-33 139
pORI00001011 97.674 43 1 0 353 395 441 483 3.01e-14 75
pORI00001011 95.349 43 2 0 441 483 353 395 1.4e-12 69
pORI00001144 98.489 1125 16 1 1 1124 1125 1 0.0 1982
pORI00001144 95.556 90 4 0 353 442 728 639 2.26e-35 145
pORI00001144 94.444 90 5 0 397 486 772 683 1.05e-33 139
pORI00001144 95.652 46 2 0 353 398 684 639 3.01e-14 75
pORI00001144 93.478 46 3 0 441 486 772 727 1.4e-12 69
pORI00001057 82.074 781 106 27 355 1124 254 1011 0.0 636
pORI00000921 82.353 765 99 23 383 1124 779 28 0.0 632
pORI00000947 81.738 794 109 22 355 1124 254 1035 0.0 630
pORI00000702 82.185 769 103 22 377 1124 254 1009 0.0 630
pORI00000421 85.906 596 74 9 534 1124 815 225 0.0 627
pORI00000446 87.138 552 64 5 577 1124 576 28 0.0 619
pORI00000031 82.045 763 103 24 383 1124 974 225 0.0 619
pORI00000072 90.594 404 37 1 721 1124 435 837 0.0 534
pORI00001062 90.099 404 39 1 721 1124 495 897 0.0 523
pORI00000990 88.861 404 45 0 721 1124 771 368 0.0 497
pORI00000343 93.151 73 5 0 818 890 244 316 2.97e-24 108
pORI00000308 95.455 66 3 0 809 874 808 743 1.07e-23 106
pORI00000914 92.958 71 3 1 817 887 710 642 1.38e-22 102
pORI00000595 92.958 71 3 1 817 887 710 642 1.38e-22 102
pORI00000478 92.958 71 3 1 817 887 354 286 1.38e-22 102
pORI00000094 98.276 58 1 0 817 874 1107 1164 1.38e-22 102
pORI00000093 98.276 58 1 0 817 874 191 248 1.38e-22 102
pORI00000320 91.667 72 6 0 818 889 870 799 4.97e-22 100
pORI00000315 91.667 72 6 0 818 889 1503 1432 4.97e-22 100
pORI00000312 91.667 72 6 0 818 889 870 799 4.97e-22 100
pORI00000309 91.667 72 6 0 818 889 799 728 4.97e-22 100
pORI00000111 95.238 63 3 0 819 881 781 719 4.97e-22 100
pORI00000307 96.61 59 2 0 817 875 996 938 1.79e-21 99
pORI00000116 96.61 59 2 0 817 875 996 938 1.79e-21 99
pORI00000110 96.61 59 2 0 817 875 2869 2811 1.79e-21 99
pORI00000098 96.61 59 2 0 817 875 996 938 1.79e-21 99
pORI00000095 96.61 59 2 0 817 875 996 938 1.79e-21 99
pORI00000301 90.278 72 7 0 818 889 939 868 2.31e-20 95
pORI00000294 96.491 57 2 0 818 874 372 428 2.31e-20 95
pORI00000292 96.491 57 2 0 818 874 372 428 2.31e-20 95
pORI00000290 96.491 57 2 0 818 874 363 419 2.31e-20 95
pORI00000239 96.491 57 2 0 818 874 186 242 2.31e-20 95
pORI00000224 90.278 72 7 0 818 889 939 868 2.31e-20 95
pORI00000223 90.278 72 7 0 818 889 939 868 2.31e-20 95
pORI00000222 90.278 72 7 0 818 889 939 868 2.31e-20 95
pORI00000097 90.278 72 7 0 818 889 939 868 2.31e-20 95
pORI00000058 90.278 72 7 0 818 889 756 685 2.31e-20 95
pORI00000240 92.424 66 3 2 825 890 1151 1088 8.32e-20 94
pORI00000092 86.957 69 8 1 821 889 935 868 8.38e-15 77