DoriC

RefSeq

NC_020279

DoriC accession number

pORI00000234

OriC length

396 nt

OriC AT content

0.4293

The location of oriC region

2697..3092 nt

Browse in NCBI

OriC map

OriC sequences

CCACCGCGCGAACACGCTAAAGCCCCACCATCGGAGCTATTCCGCTTCCAAGATCGGACAGACTCGCCAAAGCTACGCAATGGCTCCCTAATCCGATCTTGCGGCGAGCGGTGGGAATTAACAGGGAAGGGTTAGACACAGATTCTGTGGGAAAGCAGGCGCGCAAGCTGTGCAACGAGCGCCAACCGAAGACGACGAAACCCCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCTTCACAGAAATTCGGTGATTTCCGGTGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTTAAAGATACCGGGGATTTCTCCCCGATGGCTCCCTCGTGCGCTCTCCTGTTCCTGCCTTGCGGTTTATCGGTGTCTATCCGCTGTTATGGCCGCGTATTC

AT-rich region

The information of repeat sequences

Motif ATGGCTCCCTMRTSCGMTCT

Start	P-value		Site
80	1.68e-12	AAGCTACGCA	ATGGCTCCCTAATCCGATCT	TGCGGCGAGC
322	1.87e-11	TTTCTCCCCG	ATGGCTCCCTCGTGCGCTCT	CCTGTTCCTG

Motif CVGAHHHTCGGDGHHWDYCSGCKBBCAAG

Start	P-value		Site
241	1.85e-13	ACGAGCTTCA	CAGAAATTCGGTGATTTCCGGTGCTCAAG	TCAGAGGTGG
357	3.87e-11	TCCTGCCTTG	CGGTTTATCGGTGTCTATCCGCTGTTATG	GCCGCGTATT
24	9.57e-11	ACGCTAAAGC	CCCACCATCGGAGCTATTCCGCTTCCAAG	ATCGGACAGA
139	1.24e-10	GGGTTAGACA	CAGATTCTGTGGGAAAGCAGGCGCGCAAG	CTGTGCAACG

Motif GGAMTTAA

Start	P-value		Site
114	7.38e-06	GCGAGCGGTG	GGAATTAA	CAGGGAAGGG
292	1.75e-05	AAACCCGACA	GGACTTAA	AGATACCGGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000284	100.0	396	0	0	1	396	1	396	0.0	732
pORI00000234	100.0	396	0	0	1	396	1	396	0.0	732
pORI00000210	100.0	396	0	0	1	396	1	396	0.0	732
pORI00000209	100.0	396	0	0	1	396	1	396	0.0	732
pORI00000111	87.831	189	12	4	204	392	618	441	0.0	211
pORI00000069	86.911	191	13	6	203	392	3681	3502	0.0	204
pORI00000043	86.911	191	13	6	203	392	699	520	0.0	204
pORI00000244	86.842	190	14	5	203	392	798	620	0.0	202
pORI00000110	86.842	190	14	5	203	392	2730	2552	0.0	202
pORI00000056	85.864	191	15	5	203	392	559	380	0.0	193
pORI00000086	85.864	191	14	7	203	392	396	574	0.0	191
pORI00000061	85.185	189	17	5	203	391	721	544	0.0	183
pORI00000060	84.817	191	17	6	203	392	1758	1937	0.0	182
pORI00000094	84.737	190	17	6	203	391	1247	1425	0.0	180
pORI00000093	84.737	190	17	6	203	391	331	509	0.0	180
pORI00000238	84.293	191	17	7	203	392	829	651	9.80909e-45	174
pORI00000198	82.812	192	18	9	204	392	664	485	9.92999e-40	158
pORI00000309	84.756	164	14	3	204	367	635	483	1.28e-38	154
pORI00000308	84.146	164	15	3	204	367	635	483	5.98e-37	148
pORI00000343	86.111	144	9	4	206	349	412	544	7.73e-36	145
pORI00000058	83.537	164	15	4	204	367	592	441	2.78e-35	143
pORI00000320	83.03	165	16	5	204	367	705	552	3.6e-34	139
pORI00000312	83.03	165	16	5	204	367	705	552	3.6e-34	139
pORI00000301	83.03	165	16	5	204	367	763	610	3.6e-34	139
pORI00000294	85.034	147	10	5	204	349	548	683	3.6e-34	139
pORI00000292	85.034	147	10	5	204	349	548	683	3.6e-34	139
pORI00000290	85.034	147	10	5	204	349	539	674	3.6e-34	139
pORI00000239	85.034	147	10	5	204	349	362	497	3.6e-34	139
pORI00000224	83.03	165	16	5	204	367	763	610	3.6e-34	139
pORI00000223	83.03	165	16	5	204	367	763	610	3.6e-34	139
pORI00000222	83.03	165	16	5	204	367	763	610	3.6e-34	139
pORI00000097	83.03	165	16	5	204	367	763	610	3.6e-34	139
pORI00000092	83.03	165	16	5	204	367	763	610	3.6e-34	139
pORI00000307	80.628	191	24	7	203	392	857	679	4.65e-33	135
pORI00000116	80.628	191	24	7	203	392	857	679	4.65e-33	135
pORI00000098	80.628	191	24	7	203	392	857	679	4.65e-33	135
pORI00000095	80.628	191	24	7	203	392	857	679	4.65e-33	135
pORI00000315	82.424	165	17	4	204	367	1338	1185	1.67e-32	134
pORI00000306	84.354	147	11	5	204	349	543	678	1.67e-32	134
pORI00000112	82.424	165	17	4	204	367	1563	1410	1.67e-32	134
pORI00000022	82.424	165	17	5	204	367	611	458	1.67e-32	134
pORI00000012	82.424	165	17	5	204	367	654	501	1.67e-32	134
pORI00000314	83.607	122	20	0	271	392	539	418	6.06e-27	115
pORI00000075	83.607	122	20	0	271	392	539	418	6.06e-27	115
pORI00000240	93.023	43	2	1	204	246	1043	1002	8.01e-11	62