DoriC

RefSeq

NC_014003

DoriC accession number

pORI00000315

OriC length

1750 nt

OriC AT content

0.4257

The location of oriC region

5111..1162 nt

Browse in NCBI

OriC map

OriC sequences

TAGTTAGTCTTTAATGAATGCGGTTGGCGCATCGGCGGGCACCTTGCGCGCGCTGTCGCTGTTCATGCCGCGCAGCATGTCGATGGCATCGAGCACACCCTTGGCGGCGGGCGCAGCCCGCAATTTGAGCACGCCCAGGAACTGCGGCGCGTAGCGGCGTAGCGTGGCATAGCTTTCACCGATGTGGTGCAGGAAATCAAAGTCGGCAGGCCGCGCCAATGTTTGCGCTTCGGTGACGCTGGCGGCGAAGGTGTCCCAGGGCATAACGGCCTCGATGGCGGCGAACGGATCGCTGCCGCTTTGCTTGGCCTCAATCAACGCTTGACCGATGCGCCCATACATCCGCACCTTGTCGTTGATCGCCTTGCCGGAAGCCTGGAACTGCTGCTGATGCTTGTTCTTGGCCGCGTTGAACAGCTTGCCGATGATGCGATCGTGAAGGTCGATGATTTCATCGGTGACGGTGGCCATGCCTTCGATGGCCAGCGCTACCAGCGTGGCATAGCGTCGTTGCACCTCGAACTTTGCCAGATCAGCAGGCGTCATCTGGCCACCTTCACGAGCGATTTTGAGCAGGCGGTTCTGGTGAACCTGCCGCTCGATGCCTGCGGGCAGATCAAGTGCTTGCCAGGATTTCAGGCGCTCAATATGTTCGAGCATGTGGCGAGAGTTCGGTTTGGCAGGCGACTGGCGCAGCCATGCCAGCCACGTCACTTTACTGCCGTCCTTGCGCTTGAGAAGTTCGGCTCCTGTGTATGCTCACTATGCATGATTGTCTTGAGATCTAACGATCCTGAAGGTAGTCTTGTCCGTAAACGAAAAAACCGCCCAGCAAGGCGGCTTTTCGAAGGTTCTCAGAGCAGCAACTCTTTGAACCAAGGTAACTGGCTTGGAGGAGCACAGCCACCAAATCTGTCCTTTCAGTTTAGCCTTAACCGGCGCATAACTTCAAGACTAACTCCTCTAAACGGTTACCAATGGCTGCTGCCAGTGGCGTTTTTACGTGTCTTTCCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGGGCCGAGATACCAACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCATCTGTTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCGGCGCGGCCTTCTTCCTGTTCCTGGCCTTTTGCTCACATGTTTCTTTTGGCGTTATCCCCTGATTCTGTGGATAACCGCATCACCGTCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCTGATGCGGCATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTTTTCTTATAATCCGCACTGATGCCACATAGTTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCAGGGCTGCGCCCCGACACCCGCTAAAACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTCACAGGCAAGCTGTGAACGTCTCCGGGAGCTGCATGTT

AT-rich region

The information of repeat sequences

Motif CGKSGCATARCKKC

Start	P-value		Site
496	3.46e-08	GCGCTACCAG	CGTGGCATAGCGTC	GTTGCACCTC
937	7.55e-08	TAGCCTTAAC	CGGCGCATAACTTC	AAGACTAACT
163	2.86e-07	AGCGGCGTAG	CGTGGCATAGCTTT	CACCGATGTG
257	3.20e-07	GAAGGTGTCC	CAGGGCATAACGGC	CTCGATGGCG
145	7.65e-07	CCAGGAACTG	CGGCGCGTAGCGGC	GTAGCGTGGC

Motif RMTTGHCTKBMGDTSWTGCGMTCVWGAAGDTMG

Start	P-value		Site
713	1.03e-13	CAGCCACGTC	ACTTTACTGCCGTCCTTGCGCTTGAGAAGTTCG	GCTCCTGTGT
771	2.62e-13	CACTATGCAT	GATTGTCTTGAGATCTAACGATCCTGAAGGTAG	TCTTGTCCGT
413	7.38e-13	GGCCGCGTTG	AACAGCTTGCCGATGATGCGATCGTGAAGGTCG	ATGATTTCAT
623	3.25e-12	CAGATCAAGT	GCTTGCCAGGATTTCAGGCGCTCAATATGTTCG	AGCATGTGGC
1002	3.52e-11	TGGCGTTTTT	ACGTGTCTTTCCGGGTTGGACTCAAGACGATAG	TTACCGGATA

Motif TCGATGGCDGCGARCRBATC

Start	P-value		Site
272	7.28e-12	CATAACGGCC	TCGATGGCGGCGAACGGATC	GCTGCCGCTT
599	1.25e-09	AACCTGCCGC	TCGATGCCTGCGGGCAGATC	AAGTGCTTGC
80	1.25e-09	GCGCAGCATG	TCGATGGCATCGAGCACACC	CTTGGCGGCG
236	8.82e-09	CGCTTCGGTG	ACGCTGGCGGCGAAGGTGTC	CCAGGGCATA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000315	100.0	1750	0	0	1	1750	1	1750	0.0	3232
pORI00000309	94.987	778	35	4	973	1749	271	1045	0.0	1218
pORI00000058	89.248	958	71	27	812	1749	56	1001	0.0	1170
pORI00000306	93.503	785	43	8	969	1749	912	132	0.0	1160
pORI00000320	88.303	949	84	23	812	1737	159	1103	0.0	1112
pORI00000312	88.303	949	84	23	812	1737	159	1103	0.0	1112
pORI00000343	92.407	777	51	8	971	1743	776	4	0.0	1101
pORI00000112	89.988	849	62	19	853	1682	1063	1907	0.0	1083
pORI00000022	92.109	773	52	8	969	1737	242	1009	0.0	1081
pORI00000012	91.805	781	55	9	973	1749	288	1063	0.0	1079
pORI00000308	94.037	654	34	4	973	1625	271	920	0.0	987
pORI00000239	92.966	654	32	7	971	1612	729	78	0.0	941
pORI00000301	93.478	552	23	6	971	1510	396	946	0.0	808
pORI00000294	93.478	552	23	6	971	1510	915	365	0.0	808
pORI00000292	93.478	552	23	6	971	1510	915	365	0.0	808
pORI00000290	93.478	552	23	6	971	1510	906	356	0.0	808
pORI00000224	93.478	552	23	6	971	1510	396	946	0.0	808
pORI00000224	98.182	55	1	0	1506	1560	1305	1359	1.01e-20	97
pORI00000223	93.478	552	23	6	971	1510	396	946	0.0	808
pORI00000223	95.05	101	5	0	1649	1749	1488	1588	1.27e-39	159
pORI00000223	91.262	103	9	0	1506	1608	1386	1488	4.58e-34	141
pORI00000222	93.478	552	23	6	971	1510	396	946	0.0	808
pORI00000097	93.478	552	23	6	971	1510	396	946	0.0	808
pORI00000097	95.05	101	5	0	1649	1749	2008	2108	1.27e-39	159
pORI00000097	91.262	103	9	0	1506	1608	1906	2008	4.58e-34	141
pORI00000092	92.754	552	24	9	971	1510	396	943	0.0	784
pORI00000092	95.05	101	5	0	1649	1749	1872	1972	1.27e-39	159
pORI00000092	91.262	103	9	0	1506	1608	1770	1872	4.58e-34	141
pORI00000092	98.077	52	1	0	1459	1510	1007	1058	4.68e-19	92
pORI00000111	82.135	946	116	43	814	1737	99	1013	0.0	763
pORI00000244	86.011	529	50	18	814	1338	289	797	0.0	545
pORI00000061	84.973	559	55	21	808	1359	205	741	0.0	540
pORI00000056	82.31	554	76	19	804	1353	38	573	0.0	460
pORI00000307	82.226	557	72	21	804	1354	337	872	0.0	455
pORI00000307	80.0	255	37	14	1447	1695	939	1185	1.26117e-44	176
pORI00000116	82.226	557	72	21	804	1354	337	872	0.0	455
pORI00000116	80.0	255	37	14	1447	1695	939	1185	1.26117e-44	176
pORI00000098	82.226	557	72	21	804	1354	337	872	0.0	455
pORI00000098	80.87	230	32	12	1447	1669	939	1163	5.84341e-43	171
pORI00000095	82.226	557	72	21	804	1354	337	872	0.0	455
pORI00000095	80.87	230	32	12	1447	1669	939	1163	5.84341e-43	171
pORI00000110	82.149	549	69	23	814	1354	2218	2745	0.0	444
pORI00000110	82.427	239	33	9	1447	1680	2812	3046	0.0	200
pORI00000086	81.934	548	67	28	820	1358	901	377	0.0	435
pORI00000240	95.324	278	4	9	1	275	1	272	0.0	433
pORI00000240	88.184	347	29	10	1401	1747	1058	1392	0.0	403
pORI00000240	87.302	63	4	4	1292	1354	998	1056	2.19e-12	69
pORI00000043	81.67	551	73	22	812	1354	184	714	0.0	433
pORI00000094	78.754	706	95	39	971	1669	1597	940	0.0	422
pORI00000093	78.754	706	95	39	971	1669	681	24	0.0	422
pORI00000008	89.251	307	29	4	971	1275	1407	1103	0.0	381
pORI00000198	79.464	560	67	36	804	1340	132	666	0.0	353
pORI00000060	79.849	397	60	17	971	1366	2109	1732	0.0	272
pORI00000060	96.154	156	5	1	1594	1749	1535	1381	0.0	254
pORI00000238	96.154	156	5	1	1594	1749	1052	1206	0.0	254
pORI00000069	79.228	337	50	15	1003	1338	3363	3680	0.0	217
pORI00001055	85.065	154	18	5	819	968	153	1	2.12e-37	152
pORI00000284	84.354	147	11	4	1203	1338	349	204	7.67e-32	134
pORI00000234	84.354	147	11	4	1203	1338	349	204	7.67e-32	134
pORI00000210	84.354	147	11	4	1203	1338	349	204	7.67e-32	134
pORI00000209	84.354	147	11	4	1203	1338	349	204	7.67e-32	134
pORI00000181	98.333	60	1	0	1601	1660	784	725	1.67e-23	106
pORI00001057	96.721	61	2	0	1447	1507	760	700	2.16e-22	102
pORI00000947	96.721	61	2	0	1447	1507	782	722	2.16e-22	102
pORI00000921	90.789	76	7	0	1432	1507	264	339	2.16e-22	102
pORI00000702	96.721	61	2	0	1447	1507	760	700	2.16e-22	102
pORI00000446	90.789	76	7	0	1432	1507	264	339	2.16e-22	102
pORI00000072	96.721	61	2	0	1447	1507	588	528	2.16e-22	102
pORI00000031	90.789	76	7	0	1432	1507	459	534	2.16e-22	102
pORI00001164	98.246	57	1	0	1447	1503	874	818	7.78e-22	100
pORI00001144	91.667	72	6	0	1432	1503	236	307	7.78e-22	100
pORI00001062	98.246	57	1	0	1447	1503	648	592	7.78e-22	100
pORI00001056	98.246	57	1	0	1447	1503	874	818	7.78e-22	100
pORI00001020	91.667	72	6	0	1432	1503	236	307	7.78e-22	100
pORI00001011	98.246	57	1	0	1447	1503	874	818	7.78e-22	100
pORI00000834	98.246	57	1	0	1447	1503	874	818	7.78e-22	100
pORI00000124	95.161	62	1	1	1601	1660	783	844	1.01e-20	97
pORI00000011	95.0	60	2	1	1601	1660	784	842	1.3e-19	94