DoriC

RefSeq

NZ_CP024054

DoriC accession number

pORI00001020

OriC length

1124 nt

OriC AT content

0.5979

The location of oriC region

27051..28174 nt

Browse in NCBI

OriC map

OriC sequences

TCTGTTGTCATGATCCGGATAGTAGTTCAAGCTCGATCAAAATTTCCTCAAGGGAACGACTGTTTTGTGAATACCCTCTAAAACGTGCTGTATCGCATTCTGAGTGATTTTTTCGATCTCGCATGGTTTTCCTCATGGTCTTATCGAACGAAGCGGCAGAAAGCGATTCAGGGCTTCTCAGTGAAAGATCCAAAAAGGATCAATCAACGGATCGTATGATCTGACTTCTTTAGATTTTGAGAAAGGAGACACCGCTCGCCGCAGCCGAACGACCGAGCGTAGCGAGTTAGTGAGCGAGGAAGCGGAATTGCGGCGGGTTAACATCAGGCACTTACGCGCAGTGGTTGAAAAATAAGCACATCGTTTTCAAGTGCTGCTGTTCTGGTTCAAAGTGATCTGTCCTCTGCTAACAAAACGAGTTATCCACAGAAATTGTGAATGCGTAATTTTCGGCTGAGTTATCCACAGATTTTTTGTGATTTTTTGCTTCTAACACTTATTAAACTTTAGATCTTAAATGTAGATCTTTAGATCTACTTTAAGATCTTAGAAACTTAAAATACTTTTGCAAAATTAATGCCAATGTTTTTTATCTTTTATTTTCAGTAAATTATGCGTAATTTTTCACATGATGCTCACGTGAAAGGTGGATGGCTATGCCGTGAAAGGTGGATGGCTATGCCGCGAAAGGTGGATGGCTATGCCGCGAAAGGTGGATGACTATGCCGCGAAAGGTGGATGGCTATGCCGTGAAAGGTGGATGACTATGCCGTCAGGTGTTGCCGTCATATCGATCTCATAATGAGATCAAACTGTTGTCATGGTTACATGCTACGTAACTATTTGAAAAATAACCATACGCCTATTTTTTGTGCGCTTGGCGCTTTTTTATCGAAAGGTGGATGGGTATGCCGTTTGAATTGAGTTTTCTGAATTGTGAAAGGTGGACGGCTGTGCCGTTGTTTTGATCTGTATAATATATTGATAATTAAGGTGATTATATTCTGCTAAGAGCAGATATATATCTTGTTTAAAGGTGGAATCATAAAGGTGGATAAATCCACTTTACATAATCCACCTTTTAGAATACTCTGTGTATGAATGGTTGTTCTAAGGAATAAACA

AT-rich region

The information of repeat sequences

Motif GAAAGGTGGATGGCTATGCCG

Start	P-value		Site
730	1.66e-13	ACTATGCCGC	GAAAGGTGGATGGCTATGCCG	TGAAAGGTGG
686	1.66e-13	GCTATGCCGC	GAAAGGTGGATGGCTATGCCG	CGAAAGGTGG
664	1.66e-13	GCTATGCCGT	GAAAGGTGGATGGCTATGCCG	CGAAAGGTGG
642	1.66e-13	ATGCTCACGT	GAAAGGTGGATGGCTATGCCG	TGAAAGGTGG
752	3.63e-13	GCTATGCCGT	GAAAGGTGGATGACTATGCCG	TCAGGTGTTG

Motif GAAAGGTGGAHGVSTDTGCCG

Start	P-value		Site
894	4.79e-13	CTTTTTTATC	GAAAGGTGGATGGGTATGCCG	TTTGAATTGA
939	1.51e-12	TCTGAATTGT	GAAAGGTGGACGGCTGTGCCG	TTGTTTTGAT
708	3.27e-12	GCTATGCCGC	GAAAGGTGGATGACTATGCCG	CGAAAGGTGG
241	2.20e-10	TAGATTTTGA	GAAAGGAGACACCGCTCGCCG	CAGCCGAACG

Motif ATCCAC

Start	P-value		Site
1073	1.21e-04	ACTTTACATA	ATCCAC	CTTTTAGAAT
1059	1.21e-04	AGGTGGATAA	ATCCAC	TTTACATAAT
461	1.21e-04	CGGCTGAGTT	ATCCAC	AGATTTTTTG
422	1.21e-04	AAAACGAGTT	ATCCAC	AGAAATTGTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00001056	100.0	1124	0	0	1	1124	1124	1	0.0	2076
pORI00001056	96.552	87	3	0	642	728	439	353	2.26e-35	145
pORI00001056	96.552	87	3	0	686	772	483	397	2.26e-35	145
pORI00001056	97.674	43	1	0	642	684	395	353	3.01e-14	75
pORI00001056	97.674	43	1	0	730	772	483	441	3.01e-14	75
pORI00001020	100.0	1124	0	0	1	1124	1	1124	0.0	2076
pORI00001020	95.556	90	4	0	683	772	639	728	2.26e-35	145
pORI00001020	95.556	90	4	0	639	728	683	772	2.26e-35	145
pORI00001020	95.652	46	2	0	727	772	639	684	3.01e-14	75
pORI00001020	95.652	46	2	0	639	684	727	772	3.01e-14	75
pORI00001011	100.0	1124	0	0	1	1124	1124	1	0.0	2076
pORI00001011	96.552	87	3	0	642	728	439	353	2.26e-35	145
pORI00001011	96.552	87	3	0	686	772	483	397	2.26e-35	145
pORI00001011	97.674	43	1	0	642	684	395	353	3.01e-14	75
pORI00001011	97.674	43	1	0	730	772	483	441	3.01e-14	75
pORI00001144	99.911	1125	0	1	1	1124	1	1125	0.0	2071
pORI00001144	95.556	90	4	0	683	772	639	728	2.26e-35	145
pORI00001144	95.556	90	4	0	639	728	683	772	2.26e-35	145
pORI00001144	95.652	46	2	0	727	772	639	684	3.01e-14	75
pORI00001144	95.652	46	2	0	639	684	727	772	3.01e-14	75
pORI00001164	98.577	1124	16	0	1	1124	1124	1	0.0	1988
pORI00001164	96.552	87	3	0	642	728	439	353	2.26e-35	145
pORI00001164	95.402	87	4	0	686	772	483	397	1.05e-33	139
pORI00001164	97.674	43	1	0	642	684	395	353	3.01e-14	75
pORI00001164	95.349	43	2	0	730	772	483	441	1.4e-12	69
pORI00000834	98.577	1124	16	0	1	1124	1124	1	0.0	1988
pORI00000834	96.552	87	3	0	642	728	439	353	2.26e-35	145
pORI00000834	95.402	87	4	0	686	772	483	397	1.05e-33	139
pORI00000834	97.674	43	1	0	642	684	395	353	3.01e-14	75
pORI00000834	95.349	43	2	0	730	772	483	441	1.4e-12	69
pORI00001057	83.382	692	94	16	1	682	1011	331	0.0	621
pORI00000921	83.552	687	90	17	1	676	28	702	0.0	621
pORI00000947	81.552	786	111	20	1	763	1035	261	0.0	617
pORI00000446	85.406	603	72	13	1	594	28	623	0.0	612
pORI00000421	85.284	598	80	7	1	594	225	818	0.0	610
pORI00000702	83.092	692	94	18	1	682	1009	331	0.0	608
pORI00000031	83.016	683	95	16	1	674	225	895	0.0	599
pORI00000072	90.099	404	39	1	1	404	837	435	0.0	523
pORI00001062	89.604	404	41	1	1	404	897	495	0.0	512
pORI00000990	88.366	404	47	0	1	404	368	771	0.0	486
pORI00000343	93.151	73	5	0	235	307	316	244	2.97e-24	108
pORI00000308	95.455	66	3	0	251	316	743	808	1.07e-23	106
pORI00000914	92.958	71	3	1	238	308	642	710	1.38e-22	102
pORI00000595	92.958	71	3	1	238	308	642	710	1.38e-22	102
pORI00000478	92.958	71	3	1	238	308	286	354	1.38e-22	102
pORI00000094	98.276	58	1	0	251	308	1164	1107	1.38e-22	102
pORI00000093	98.276	58	1	0	251	308	248	191	1.38e-22	102
pORI00000320	91.667	72	6	0	236	307	799	870	4.97e-22	100
pORI00000315	91.667	72	6	0	236	307	1432	1503	4.97e-22	100
pORI00000312	91.667	72	6	0	236	307	799	870	4.97e-22	100
pORI00000309	91.667	72	6	0	236	307	728	799	4.97e-22	100
pORI00000111	95.238	63	3	0	244	306	719	781	4.97e-22	100
pORI00000307	96.61	59	2	0	250	308	938	996	1.79e-21	99
pORI00000116	96.61	59	2	0	250	308	938	996	1.79e-21	99
pORI00000110	96.61	59	2	0	250	308	2811	2869	1.79e-21	99
pORI00000098	96.61	59	2	0	250	308	938	996	1.79e-21	99
pORI00000095	96.61	59	2	0	250	308	938	996	1.79e-21	99
pORI00000301	90.278	72	7	0	236	307	868	939	2.31e-20	95
pORI00000294	96.491	57	2	0	251	307	428	372	2.31e-20	95
pORI00000292	96.491	57	2	0	251	307	428	372	2.31e-20	95
pORI00000290	96.491	57	2	0	251	307	419	363	2.31e-20	95
pORI00000239	96.491	57	2	0	251	307	242	186	2.31e-20	95
pORI00000224	90.278	72	7	0	236	307	868	939	2.31e-20	95
pORI00000223	90.278	72	7	0	236	307	868	939	2.31e-20	95
pORI00000222	90.278	72	7	0	236	307	868	939	2.31e-20	95
pORI00000097	90.278	72	7	0	236	307	868	939	2.31e-20	95
pORI00000058	90.278	72	7	0	236	307	685	756	2.31e-20	95
pORI00000240	92.424	66	3	2	235	300	1088	1151	8.32e-20	94
pORI00000092	86.957	69	8	1	236	304	868	935	8.38e-15	77