RefSeq NC_019242
DoriC accession number pORI00000110
OriC length 3139 nt
OriC AT content 0.5269
The location of oriC region 4273..2557 nt
Browse in NCBI
OriC map
OriC sequences
ATGCCATCGAGGAGAAGGCTGTACTGGAGTATCAGCGTCAGAACGAGCTGGAGCTGACGCTCCGTCAGAAGCAGAAGAGTTTTTGATGGTCCGAAGATGAGGTGACAGCCCGCACGAAGAAGGGCTCATCGCGTTCCTGCTAAATAGGCTGACTACCGGAATGGTAGTGACTTATCCCGGATGAAGTGATGAAAATTCTTAACGTTATTGAAGCCCTGCTGAACTGTTTTTACCTGGTGATGGAGCTGTGTGAGTTGCCGGAGAGGCATTTGCCGGTTTTTAAGGCGTTCGCGCTGATTTTAGTGTGACTTTACGCGGCATGCATCTGGCTGCATGACTATGCATAAGTGTAATATCCAGCGGCTGCGTTTCCGGTGTTTTTTCGTCATGTCTGTCGCCACTTTCTCGCGTCTGGCACCGGAAACGCAGCCAACCCCGTTTCAGCTGTGCGGGCAACAGATGTTATGGTAAATCAACCGTCCGTTGATAAAGGTTCTGATAATACCCATGTAGGTGATGTTGTTTGCTTTTTATCTACACACTGCCTGATGGAGCTATTTATGAATGCTGATGAAGTTACACGAATTCTTGCGCAATCGAGTCAAAATGATTGGATTGTGGATGATGAGACAGGGGCGTTTACTTATAAAAATGATTTAGCACTGCACATTAAGAGAGCTGATTACGACGACTACAACTCGTTTAATGAGCCTTGGGCTGTTCGTCATCCTGATAGTAATGCGTGTTCAGTCGAGTACACCGTTCACTATGGTTCTTCGTTTGTTGATAGAAAAACCTTGGTTTCCGTCGATGGTCATCGTGCAACCTTGCCTATGCCTGCATCCGCAACGGATCTAAACGTGTCATCGGCTGATGTGAATTTCGCCAAAATTGTAAACATTGGCGATCGCGTTGATGAATACATTCAACGTTCTGGTCTTACGATTCAGCCCTAATTTAACGATAAGCCCGGCCTCCAAATGCGGGCTGTTCCTGCATGTAACCAGCATAACTAATCGGCTTTTTTCCTTACTGTATATATTGGCTTTTTATGTCGCGGCTTTCTTACTTGCTCGGACACAGAAGGACCAATTATGTCTAAATAATCTACAAGCTTTGTAAGGTCGTATATGTTGCGGCCACCATATCGGTTGTCGCTTTTTGATGTCGGTTTTTTATCTAAGAGATTGGCTTTTTCTAGGTCATTAATAGCCCTTTGCACCGTCCTTACTGACACCCCCATCCGTATAGCCAGGCTCTCCATTGAGGGGTGCGGCCACTCCTGTAGATTCCACCAGTGTACTATGAGATTCAGCAAGGTATTGAATGCTACAGGGCTCAATTTCTTCTCATTTTGTATAAAAAACAACACAGTAGGTACTGCAGTCCATCCTAATGACAGACCTCCAGCCTTCCATTTTTTTTCTATTGCGTAACTCATTGATTATCCTGTAAATATTTTTTTTGAGATATATATAATATAAGTATTCATATGAATAGGGTGACACCAGCGCCATTATTACACAACTATAAAAGGCTAATCTGAGAACAGAAAAACATTTCTATCTGCATTAAATACGGAGTTAGTGATATGAAAACCAAACAACATCATGATCTTGTAAAAGATACTGAAATATTTGGTGTATCCTTGTCTCTGTTGATTTCCAGAGCGAATGAGAGATCTGTTACAATGCCATCTGGTCTAAGTAGGGAGCAGAGAAGAGCATGGGCAGCGGATCAAGCACGCAAAATCCACAATTGAATGTTGTCTCTTTCTCTGAGACATTCAATCTTTATTACACATCCCGCTTTTCTCAAAAAACACTCGATAAAATCGATGACTTCATCGAACATTTCGAGAAGTACAATCTTTTTGGCGATGCCTTAAAAGGCCATCCGGCTTGGATTGGCAAGGTATCGCCATCTTGGAACGTGCCTGACAGTTACGAAAACAAAGAAGCTATTGAAGAACATGCCAGGGCTAATAAATTGTGGCATGCCCATATAGGCGATCCCGTTTTCATCGATACATTTCACGGGAAGTACAAAGTCTCTGATTGGGTCATCCACTTCCAACGTCTAGCGCCGAACCATATAAAACTGTTAGAGCTTGGGTATCATGACCCTATGCAACTCCCCCAAAATTTCGAATGATCTCTTGTTCGGATGAATGATCCCTTGAGATTCGTTGACCCTCGTCGTAATCTCTTGCGGTGAAAACGAAAAAACCACCCGGCAAGGTGGCTTTTTCGAAGGTTCGCAAGAGTTGACGCTCTTTTGAACCGCGGTAACTGGCTTGGAGGAGCACAGTCACCAAAACTGTCCTTTCAGTGTAGCCTTATCGCACCCGAAACTTCAAGACTCTCCTCCTCTAAACCTGTTACCAGTGGCTGCTGCCAGTGGCGCTTTGTCGTGTTTTTCCGGATTGGACTCAAGTTGATAGTTACCGGATAAGGCGCAGCGGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTTCCCGGAACTGAGTGTCAGGCGTGGAATGAGACAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGTCCTGTCGGGTTTCGCCACCACTGATTTGAGCGTCAGATTTCGTGATGCTTGTCAGGGGGGCGGAGCCTATGGAAAAACGGCTTCGCCGCGGCCTTATCGTTTCCCTGTTAAGTTTCTTCCTGGCATCTACCAGGAAATTTCCGCCCCATTCGTAAGCCCGCACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAATATATCCTGTATCGCATATTCTGCTTACGCGCCGGTGCCGCCTTTTTTCTCCTGCCACATGAAGCACTTCACTGATTCCCGCACCCGTGCCAACATAGTAAGCCAGTATACACTCCGCTAGCGCTGCGTGACTGGTTCAGGGCTGCGCCCCGAAACCCGCTAAAAGCCACTGACGCGCTGCGGCTTGTTCCAACCCCGCGCCGACCGGGAAAGGCTTTCCCGCCCGTCCCGGCGTTATCAGGAGGCCGGTTTGTCAGAGAAACGGAACAAG
ATGCCATCGAGGAGAAGGCTGTACTGGAGTATCAGCGTCAGAACGAGCTGGAGCTGACGCTCCGTCAGAAGCAGAAGAGTTTTTGATGGTCCGAAGATGAGGTGACAGCCCGCACGAAGAAGGGCTCATCGCGTTCCTGCTAAATAGGCTGACTACCGGAATGGTAGTGACTTATCCCGGATGAAGTGATGAAAATTCTTAACGTTATTGAAGCCCTGCTGAACTGTTTTTACCTGGTGATGGAGCTGTGTGAGTTGCCGGAGAGGCATTTGCCGGTTTTTAAGGCGTTCGCGCTGATTTTAGTGTGACTTTACGCGGCATGCATCTGGCTGCATGACTATGCATAAGTGTAATATCCAGCGGCTGCGTTTCCGGTGTTTTTTCGTCATGTCTGTCGCCACTTTCTCGCGTCTGGCACCGGAAACGCAGCCAACCCCGTTTCAGCTGTGCGGGCAACAGATGTTATGGTAAATCAACCGTCCGTTGATAAAGGTTCTGATAATACCCATGTAGGTGATGTTGTTTGCTTTTTATCTACACACTGCCTGATGGAGCTATTTATGAATGCTGATGAAGTTACACGAATTCTTGCGCAATCGAGTCAAAATGATTGGATTGTGGATGATGAGACAGGGGCGTTTACTTATAAAAATGATTTAGCACTGCACATTAAGAGAGCTGATTACGACGACTACAACTCGTTTAATGAGCCTTGGGCTGTTCGTCATCCTGATAGTAATGCGTGTTCAGTCGAGTACACCGTTCACTATGGTTCTTCGTTTGTTGATAGAAAAACCTTGGTTTCCGTCGATGGTCATCGTGCAACCTTGCCTATGCCTGCATCCGCAACGGATCTAAACGTGTCATCGGCTGATGTGAATTTCGCCAAAATTGTAAACATTGGCGATCGCGTTGATGAATACATTCAACGTTCTGGTCTTACGATTCAGCCCTAATTTAACGATAAGCCCGGCCTCCAAATGCGGGCTGTTCCTGCATGTAACCAGCATAACTAATCGGCTTTTTTCCTTACTGTATATATTGGCTTTTTATGTCGCGGCTTTCTTACTTGCTCGGACACAGAAGGACCAATTATGTCTAAATAATCTACAAGCTTTGTAAGGTCGTATATGTTGCGGCCACCATATCGGTTGTCGCTTTTTGATGTCGGTTTTTTATCTAAGAGATTGGCTTTTTCTAGGTCATTAATAGCCCTTTGCACCGTCCTTACTGACACCCCCATCCGTATAGCCAGGCTCTCCATTGAGGGGTGCGGCCACTCCTGTAGATTCCACCAGTGTACTATGAGATTCAGCAAGGTATTGAATGCTACAGGGCTCAATTTCTTCTCATTTTGTATAAAAAACAACACAGTAGGTACTGCAGTCCATCCTAATGACAGACCTCCAGCCTTCCATTTTTTTTCTATTGCGTAACTCATTGATTATCCTGTAAATATTTTTTTTGAGATATATATAATATAAGTATTCATATGAATAGGGTGACACCAGCGCCATTATTACACAACTATAAAAGGCTAATCTGAGAACAGAAAAACATTTCTATCTGCATTAAATACGGAGTTAGTGATATGAAAACCAAACAACATCATGATCTTGTAAAAGATACTGAAATATTTGGTGTATCCTTGTCTCTGTTGATTTCCAGAGCGAATGAGAGATCTGTTACAATGCCATCTGGTCTAAGTAGGGAGCAGAGAAGAGCATGGGCAGCGGATCAAGCACGCAAAATCCACAATTGAATGTTGTCTCTTTCTCTGAGACATTCAATCTTTATTACACATCCCGCTTTTCTCAAAAAACACTCGATAAAATCGATGACTTCATCGAACATTTCGAGAAGTACAATCTTTTTGGCGATGCCTTAAAAGGCCATCCGGCTTGGATTGGCAAGGTATCGCCATCTTGGAACGTGCCTGACAGTTACGAAAACAAAGAAGCTATTGAAGAACATGCCAGGGCTAATAAATTGTGGCATGCCCATATAGGCGATCCCGTTTTCATCGATACATTTCACGGGAAGTACAAAGTCTCTGATTGGGTCATCCACTTCCAACGTCTAGCGCCGAACCATATAAAACTGTTAGAGCTTGGGTATCATGACCCTATGCAACTCCCCCAAAATTTCGAATGATCTCTTGTTCGGATGAATGATCCCTTGAGATTCGTTGACCCTCGTCGTAATCTCTTGCGGTGAAAACGAAAAAACCACCCGGCAAGGTGGCTTTTTCGAAGGTTCGCAAGAGTTGACGCTCTTTTGAACCGCGGTAACTGGCTTGGAGGAGCACAGTCACCAAAACTGTCCTTTCAGTGTAGCCTTATCGCACCCGAAACTTCAAGACTCTCCTCCTCTAAACCTGTTACCAGTGGCTGCTGCCAGTGGCGCTTTGTCGTGTTTTTCCGGATTGGACTCAAGTTGATAGTTACCGGATAAGGCGCAGCGGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTTCCCGGAACTGAGTGTCAGGCGTGGAATGAGACAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGTCCTGTCGGGTTTCGCCACCACTGATTTGAGCGTCAGATTTCGTGATGCTTGTCAGGGGGGCGGAGCCTATGGAAAAACGGCTTCGCCGCGGCCTTATCGTTTCCCTGTTAAGTTTCTTCCTGGCATCTACCAGGAAATTTCCGCCCCATTCGTAAGCCCGCACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAATATATCCTGTATCGCATATTCTGCTTACGCGCCGGTGCCGCCTTTTTTCTCCTGCCACATGAAGCACTTCACTGATTCCCGCACCCGTGCCAACATAGTAAGCCAGTATACACTCCGCTAGCGCTGCGTGACTGGTTCAGGGCTGCGCCCCGAAACCCGCTAAAAGCCACTGACGCGCTGCGGCTTGTTCCAACCCCGCGCCGACCGGGAAAGGCTTTCCCGCCCGTCCCGGCGTTATCAGGAGGCCGGTTTGTCAGAGAAACGGAACAAG
AT-rich region
The information of repeat sequences

Motif CSCRCCSGTSCCRVC

StartP-valueSite
28964.24e-09ATTCTGCTTACGCGCCGGTGCCGCCTTTTTTCTCC
30871.16e-08GAAAGGCTTTCCCGCCCGTCCCGGCGTTATCAGGA
29482.38e-08CACTGATTCCCGCACCCGTGCCAACATAGTAAGCC

Motif TGAAAACAAAAMAAC

StartP-valueSite
22153.60e-09TCTCTTGCGGTGAAAACGAAAAAACCACCCGGCAA
15939.63e-09GTTAGTGATATGAAAACCAAACAACATCATGATCT
15444.94e-08AAGGCTAATCTGAGAACAGAAAAACATTTCTATCT
19471.48e-07CTGACAGTTACGAAAACAAAGAAGCTATTGAAGAA
13562.86e-07CTTCTCATTTTGTATAAAAAACAACACAGTAGGTA

Motif RSMGCRSMSGWVSGASYSAVCRSRGSG

StartP-valueSite
24551.13e-13TACCGGATAAGGCGCAGCGGTCGGACTGAACGGGGGGTTCGTGCATA
28197.19e-13CGCACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAG
26035.59e-12CAGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000110 100.0 3139 0 0 1 3139 1 3139 0.0 5797
pORI00000307 90.011 871 74 12 2197 3062 327 1189 0.0 1114
pORI00000116 90.011 871 74 12 2197 3062 327 1189 0.0 1114
pORI00000098 90.226 839 71 10 2197 3031 327 1158 0.0 1085
pORI00000095 90.226 839 71 10 2197 3031 327 1158 0.0 1085
pORI00000094 88.498 852 71 17 2199 3031 1788 945 0.0 1005
pORI00000093 88.498 852 71 17 2199 3031 872 29 0.0 1005
pORI00000086 84.946 930 97 35 2224 3139 901 1 0.0 902
pORI00000061 84.316 950 114 27 2195 3132 188 1114 0.0 896
pORI00000069 81.921 968 105 52 2218 3139 3139 4082 0.0 754
pORI00000244 83.097 846 110 26 2197 3031 268 1091 0.0 739
pORI00000056 90.52 538 45 6 2196 2731 27 560 0.0 706
pORI00000238 81.409 866 123 34 2200 3046 291 1137 0.0 673
pORI00000060 81.25 880 124 35 2200 3056 2297 1436 0.0 673
pORI00000043 90.385 520 37 13 2219 2731 187 700 0.0 671
pORI00000198 87.363 546 45 21 2201 2729 126 664 0.0 604
pORI00000111 86.949 544 51 18 2216 2745 97 634 0.0 593
pORI00000111 78.333 240 41 8 2811 3046 725 957 1.78e-35 147
pORI00000315 82.117 548 71 21 2218 2745 814 1354 0.0 444
pORI00000315 82.427 239 33 9 2812 3046 1447 1680 0.0 200
pORI00000314 81.226 522 75 17 2169 2673 24 539 0.0 399
pORI00000314 80.169 237 35 11 2802 3031 696 927 1.35996e-41 167
pORI00000075 81.226 522 75 17 2169 2673 24 539 0.0 399
pORI00000075 80.169 237 35 11 2802 3031 696 927 1.35996e-41 167
pORI00000022 76.123 913 125 67 2215 3046 53 953 0.0 392
pORI00000334 75.177 987 160 54 2196 3132 959 8 0.0 387
pORI00000322 75.177 987 160 54 2196 3132 959 8 0.0 387
pORI00000320 80.855 491 60 29 2287 2745 233 721 0.0 355
pORI00000320 79.498 239 40 7 2812 3046 814 1047 6.35e-40 161
pORI00000312 80.855 491 60 29 2287 2745 233 721 0.0 355
pORI00000312 79.498 239 40 7 2812 3046 814 1047 6.35e-40 161
pORI00000058 78.863 563 75 32 2200 2729 41 592 0.0 340
pORI00000058 79.916 239 38 8 2812 3046 700 932 1.35996e-41 167
pORI00000301 82.741 394 46 18 2372 2745 388 779 0.0 331
pORI00000301 100.0 57 0 0 2812 2868 883 939 3.02e-23 106
pORI00000294 82.741 394 46 18 2372 2745 923 532 0.0 331
pORI00000294 100.0 57 0 0 2812 2868 428 372 3.02e-23 106
pORI00000292 82.741 394 46 18 2372 2745 923 532 0.0 331
pORI00000292 100.0 57 0 0 2812 2868 428 372 3.02e-23 106
pORI00000290 82.741 394 46 18 2372 2745 914 523 0.0 331
pORI00000290 100.0 57 0 0 2812 2868 419 363 3.02e-23 106
pORI00000239 82.741 394 46 18 2372 2745 737 346 0.0 331
pORI00000239 88.764 89 7 3 2812 2898 242 155 3.02e-23 106
pORI00000224 82.741 394 46 18 2372 2745 388 779 0.0 331
pORI00000224 100.0 57 0 0 2812 2868 883 939 3.02e-23 106
pORI00000223 82.741 394 46 18 2372 2745 388 779 0.0 331
pORI00000223 100.0 57 0 0 2812 2868 883 939 3.02e-23 106
pORI00000222 82.741 394 46 18 2372 2745 388 779 0.0 331
pORI00000222 100.0 57 0 0 2812 2868 883 939 3.02e-23 106
pORI00000097 82.741 394 46 18 2372 2745 388 779 0.0 331
pORI00000097 100.0 57 0 0 2812 2868 883 939 3.02e-23 106
pORI00000092 82.741 394 46 18 2372 2745 388 779 0.0 331
pORI00000092 96.296 54 1 1 2812 2865 883 935 1.09e-17 88
pORI00000092 100.0 45 0 0 2824 2868 1007 1051 1.41e-16 84
pORI00000112 79.837 491 65 26 2287 2745 1091 1579 0.0 329
pORI00000343 77.891 588 83 37 2200 2748 969 390 0.0 322
pORI00000343 81.176 255 33 13 2811 3056 301 53 0.0 191
pORI00000200 77.625 581 96 25 2176 2731 114 685 0.0 322
pORI00000309 82.461 382 48 16 2382 2745 271 651 0.0 316
pORI00000309 80.417 240 36 9 2812 3046 743 976 2.92871e-43 172
pORI00000308 82.199 382 49 16 2382 2745 271 651 0.0 311
pORI00000308 78.453 181 29 8 2812 2988 743 917 2.33e-24 110
pORI00000306 81.633 392 54 15 2372 2745 918 527 0.0 309
pORI00000012 77.837 564 78 32 2220 2745 116 670 0.0 305
pORI00000284 86.842 190 14 5 2552 2730 392 203 0.0 202
pORI00000234 86.842 190 14 5 2552 2730 392 203 0.0 202
pORI00000210 86.842 190 14 5 2552 2730 392 203 0.0 202
pORI00000209 86.842 190 14 5 2552 2730 392 203 0.0 202
pORI00000240 77.215 237 35 15 2813 3046 1105 1325 1.08e-27 121
pORI00000240 91.111 45 1 1 2701 2745 1015 1056 8.57e-09 58
pORI00001057 96.667 60 2 0 2811 2870 761 702 1.4e-21 100
pORI00000947 96.667 60 2 0 2811 2870 783 724 1.4e-21 100
pORI00000921 96.667 60 2 0 2811 2870 278 337 1.4e-21 100
pORI00000446 96.667 60 2 0 2811 2870 278 337 1.4e-21 100
pORI00000072 96.667 60 2 0 2811 2870 589 530 1.4e-21 100
pORI00000031 96.667 60 2 0 2811 2870 473 532 1.4e-21 100
pORI00001164 96.61 59 2 0 2811 2869 875 817 5.05e-21 99
pORI00001144 96.61 59 2 0 2811 2869 250 308 5.05e-21 99
pORI00001062 96.61 59 2 0 2811 2869 649 591 5.05e-21 99
pORI00001056 96.61 59 2 0 2811 2869 875 817 5.05e-21 99
pORI00001020 96.61 59 2 0 2811 2869 250 308 5.05e-21 99
pORI00001011 96.61 59 2 0 2811 2869 875 817 5.05e-21 99
pORI00000834 96.61 59 2 0 2811 2869 875 817 5.05e-21 99
pORI00000702 96.552 58 2 0 2811 2868 761 704 1.82e-20 97