RefSeq NC_006881
DoriC accession number pORI00000058
OriC length 1236 nt
OriC AT content 0.4547
The location of oriC region 4622..5857 nt
Browse in NCBI
OriC map
OriC sequences
AAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCCTGTAAACGAAAAAACCGCCTGGGGAGGCGGTTTAGTCGAAGGTTAAGTCAGTTGGGGACTGCTTAACCGGGTAACTGGCTTTAGTGGAGCACAGATACCAAATGCTGTCCTTCCAGTGTAGCCGCTATAAGGCTTCAACTTCAAGAGTTCTGCGTATCTAAATCCACTATCCAGTTACCAATGGCTGCTCCAGTGGCGTTAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCAACAGCGTGAGCAATGAGAAAGCGCCACGCTTCCCAAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGGTTTTTGTGATGCTCGTCAGGGGGGCGGAGCTATGGAAAAACGCCAGCTGCGTGGCCTTTTCCGGGTTCTTGTTTTTTGCTCACATGTTTCTTTTGGTGTTATCCCCTGATTCTGTGGATAACCGCATTACCGTCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAAAGCGCCTGGACGAGCATTTTCTCCTTACGCATCTGTGCGGCATTTCACACCCGGCATGGTGCACTTTTCATACAATCCTCACTGATGCCAAATGATTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGCTACGCCCCGACACCCGCTAAAACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTCACAGGCCAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCCCCGAAGCGTGCGAGGCAGCTGCGGTAAAGCTCGTCAGCGTGGTCGTGAAGCGCTTCCAGATGTCAGCCTGGTCGTCGGCGTCCAGTTCATTCAGTTTTTCCAGCAGGGTCAGCGTCTGGCTTCTGATGAAGCGGGCCATGTTAAGGGCGGTTTTTTCCTGTTTAGTCACAGTTCTGTTTCTCCATGTGTGGGGAGTCTGTCGGAGGTTTTTA
AAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCCTGTAAACGAAAAAACCGCCTGGGGAGGCGGTTTAGTCGAAGGTTAAGTCAGTTGGGGACTGCTTAACCGGGTAACTGGCTTTAGTGGAGCACAGATACCAAATGCTGTCCTTCCAGTGTAGCCGCTATAAGGCTTCAACTTCAAGAGTTCTGCGTATCTAAATCCACTATCCAGTTACCAATGGCTGCTCCAGTGGCGTTAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCAACAGCGTGAGCAATGAGAAAGCGCCACGCTTCCCAAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGGTTTTTGTGATGCTCGTCAGGGGGGCGGAGCTATGGAAAAACGCCAGCTGCGTGGCCTTTTCCGGGTTCTTGTTTTTTGCTCACATGTTTCTTTTGGTGTTATCCCCTGATTCTGTGGATAACCGCATTACCGTCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAAAGCGCCTGGACGAGCATTTTCTCCTTACGCATCTGTGCGGCATTTCACACCCGGCATGGTGCACTTTTCATACAATCCTCACTGATGCCAAATGATTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGCTACGCCCCGACACCCGCTAAAACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTCACAGGCCAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCCCCGAAGCGTGCGAGGCAGCTGCGGTAAAGCTCGTCAGCGTGGTCGTGAAGCGCTTCCAGATGTCAGCCTGGTCGTCGGCGTCCAGTTCATTCAGTTTTTCCAGCAGGGTCAGCGTCTGGCTTCTGATGAAGCGGGCCATGTTAAGGGCGGTTTTTTCCTGTTTAGTCACAGTTCTGTTTCTCCATGTGTGGGGAGTCTGTCGGAGGTTTTTA
AT-rich region
The information of repeat sequences

Motif AGATACCAAHDGCT

StartP-valueSite
1471.79e-09AGTGGAGCACAGATACCAAATGCTGTCCTTCCAG
3751.21e-07CACCGAACTGAGATACCAACAGCGTGAGCAATGA
2271.48e-07TCCACTATCCAGTTACCAATGGCTGCTCCAGTGG
8402.55e-07CAATCCTCACTGATGCCAAATGATTAAGCCAGTA

Motif GRRAAAVCGCCWGG

StartP-valueSite
7531.52e-08GCGAGGAAGCGGAAAAGCGCCTGGACGAGCATTT
5841.02e-07GCGGAGCTATGGAAAAACGCCAGCTGCGTGGCCT
632.04e-07CCTGTAAACGAAAAAACCGCCTGGGGAGGCGGTT
4903.08e-07GAGCCACCAGGGGGAAACGCCTGGTATCTTTAAG
3973.44e-07CGTGAGCAATGAGAAAGCGCCACGCTTCCCAAAG

Motif GTTWAGTC

StartP-valueSite
2521.37e-05CTCCAGTGGCGTTAAGTCGTGTCTTACC
961.37e-05TTAGTCGAAGGTTAAGTCAGTTGGGGAC
11842.98e-05GTTTTTTCCTGTTTAGTCACAGTTCTGT
842.98e-05TGGGGAGGCGGTTTAGTCGAAGGTTAAG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000058 100.0 1236 0 0 1 1236 1 1236 0.0 2283
pORI00000343 91.584 1010 66 16 1 995 1009 4 0.0 1376
pORI00000309 93.612 861 41 12 151 1002 191 1046 0.0 1273
pORI00000306 88.674 1033 83 28 1 1004 1156 129 0.0 1229
pORI00000320 88.878 1007 87 20 1 989 104 1103 0.0 1216
pORI00000312 88.878 1007 87 20 1 989 104 1103 0.0 1216
pORI00000012 88.594 1017 91 22 1 1002 58 1064 0.0 1212
pORI00000112 89.574 940 74 19 13 934 974 1907 0.0 1181
pORI00000315 89.226 956 75 24 56 1001 812 1749 0.0 1170
pORI00000022 84.476 1211 145 34 9 1187 8 1207 0.0 1155
pORI00000308 93.071 736 37 12 151 878 191 920 0.0 1064
pORI00000239 86.519 905 73 36 1 865 973 78 0.0 950
pORI00000111 84.012 1007 110 48 1 989 40 1013 0.0 922
pORI00000301 87.359 799 61 28 1 763 152 946 0.0 880
pORI00000294 87.359 799 61 27 1 763 1159 365 0.0 880
pORI00000292 87.359 799 61 27 1 763 1159 365 0.0 880
pORI00000290 87.359 799 61 27 1 763 1150 356 0.0 880
pORI00000224 87.234 799 62 28 1 763 152 946 0.0 874
pORI00000223 87.234 799 62 28 1 763 152 946 0.0 874
pORI00000223 94.161 137 8 0 901 1037 1488 1624 0.0 209
pORI00000222 87.234 799 62 28 1 763 152 946 0.0 874
pORI00000097 87.234 799 62 28 1 763 152 946 0.0 874
pORI00000097 94.203 138 8 0 901 1038 2008 2145 0.0 211
pORI00000092 86.946 789 62 29 1 753 152 935 0.0 848
pORI00000092 94.203 138 8 0 901 1038 1872 2009 0.0 211
pORI00000092 98.077 52 1 0 712 763 1007 1058 3.3e-19 92
pORI00000008 85.379 554 52 20 1 530 1651 1103 0.0 547
pORI00000094 77.766 931 140 46 8 921 1820 940 0.0 510
pORI00000093 77.766 931 140 46 8 921 904 24 0.0 510
pORI00000240 80.328 549 84 23 1 537 411 947 0.0 394
pORI00000240 87.032 347 32 10 654 999 1058 1392 0.0 379
pORI00000198 79.264 598 82 33 12 594 96 666 0.0 379
pORI00000061 79.216 587 78 34 16 592 168 720 0.0 368
pORI00000244 78.814 590 80 36 13 592 243 797 0.0 355
pORI00000043 78.793 580 79 34 41 609 169 715 0.0 350
pORI00000110 78.863 563 75 32 41 592 2200 2729 0.0 340
pORI00000110 79.916 239 38 9 700 932 2812 3046 5.31933e-42 167
pORI00000086 80.361 499 57 31 120 610 844 379 0.0 340
pORI00000307 77.909 593 86 36 10 592 299 856 0.0 327
pORI00000307 78.431 255 40 14 700 947 939 1185 1.49e-37 152
pORI00000116 77.909 593 86 36 10 592 299 856 0.0 327
pORI00000116 78.431 255 40 14 700 947 939 1185 1.49e-37 152
pORI00000098 77.909 593 86 36 10 592 299 856 0.0 327
pORI00000098 79.13 230 35 12 700 921 939 1163 6.94e-36 147
pORI00000095 77.909 593 86 36 10 592 299 856 0.0 327
pORI00000095 79.13 230 35 12 700 921 939 1163 6.94e-36 147
pORI00000238 91.848 184 12 3 852 1033 1056 1238 0.0 254
pORI00000060 91.351 185 12 3 852 1033 1531 1348 0.0 250
pORI00000284 85.616 146 9 4 459 592 349 204 8.97e-35 143
pORI00000234 85.616 146 9 4 459 592 349 204 8.97e-35 143
pORI00000210 85.616 146 9 4 459 592 349 204 8.97e-35 143
pORI00000209 85.616 146 9 4 459 592 349 204 8.97e-35 143
pORI00001057 95.082 61 3 0 700 760 760 700 7.09e-21 97
pORI00000947 95.082 61 3 0 700 760 782 722 7.09e-21 97
pORI00000921 89.474 76 8 0 685 760 264 339 7.09e-21 97
pORI00000702 95.082 61 3 0 700 760 760 700 7.09e-21 97
pORI00000446 89.474 76 8 0 685 760 264 339 7.09e-21 97
pORI00000072 95.082 61 3 0 700 760 588 528 7.09e-21 97
pORI00000031 89.474 76 8 0 685 760 459 534 7.09e-21 97
pORI00001164 96.491 57 2 0 700 756 874 818 2.55e-20 95
pORI00001144 90.278 72 7 0 685 756 236 307 2.55e-20 95
pORI00001062 96.491 57 2 0 700 756 648 592 2.55e-20 95
pORI00001056 96.491 57 2 0 700 756 874 818 2.55e-20 95
pORI00001020 90.278 72 7 0 685 756 236 307 2.55e-20 95
pORI00001011 96.491 57 2 0 700 756 874 818 2.55e-20 95
pORI00000834 96.491 57 2 0 700 756 874 818 2.55e-20 95
pORI00000181 95.0 60 2 1 854 912 784 725 9.17e-20 94
pORI00000124 90.769 65 3 2 851 912 780 844 5.52e-17 84
pORI00000011 90.476 63 4 2 851 912 781 842 1.98e-16 82