RefSeq NC_019279
DoriC accession number pORI00000116
OriC length 2057 nt
OriC AT content 0.4881
The location of oriC region 2402..1756 nt
Browse in NCBI
OriC map
OriC sequences
ATCTATGCCTGTGTTTTTATACAGTAATGACGCCATGGTAAACCTTATGACGTTATGCGTCAAACCCGCCAGTATGACACCTGCAAATGCGTATTAGATCTGGTGTTTCTTCAGCAAGGCACGTAGCTGATGATAAGTCAGACCCAGTAATTCAGCGGCTTTTTTCTGGTTAAATTTAGCCTGCTGTAAGCTGGTTTGTAGAAAGTCTTTCTCTTGCTGCTGCTGGAATTCACGCAGATCCAGCGTTATAACGATGTGTATCCTATGTGCTCGGATTGGATAGATTTCCATTACGGTGAAGGATCTTCTTGAGATCCTTTCTGTGGCGTCGTAATCTCTTGCTCTGTAAACGAAAAAACCGCCCTGCAAGGCGGTTTTTCGAAGGTTCTCAGAGCAGCAACTCTTTGAACCGTGGTAACTGGCTTACGAGGAGCGCAGTAACCAAATCTGTTCTTTCAGTTTAGCCTTAACAGGCGCATAACTTCAAGACTAACTCCTCTAAATCAGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTTCCGGGTTGGACTCAAGATGATAGTTACCGGATAAGGCGCAGCAGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCATCCAGGAGCGAACTGCCTTCGCGGAACTGAGTGTCAGGCGTGGAATGAGATAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAATGCGGGGGAGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGCCGCATCGGGTTTCGCCACCACTGATTTGAGCGTCAGATTTCATGATGTTTGTCAGGGGGGCGGAGCCTATGGAAAAACGGCTTCGCCGCGGCCTTATCTCTTCCCTGTTAAGCTCCTTCCTGGTATCTCCCAGGAAATTTCCGCCCCGCCTGTAAGCCGGCACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAATATATCCTGTACTACATATCCTGCTGACGCGCTGGTGCCGCCTTTTTTCTCCTGCTACATGAAGCACTTCACTGATTTCCACATCCGTGCCAACATAGTCAGCCAGTATACACTCCGCTAGCGCTACGTGACTGGTTCAGGGCTGCGCCCCGAAACCGGCTAAAAGCTAATGACGCGCCTGCGGCTTGTCCAACGCCTCACGGCACCGGATTAAAATCCGCTCCCGTTCACCGTTTCTGACTGCCTTTCACCGTCGCTGGCGCTTCATCGTTTCTACTGTGTCTGGCAGACTGTGCTGATTTATTCTGACTGGAGAACGTTATGGCCAGACTGACAAACTTGACGCCTGCAGAGAAAAAATTTCTTGATGATGCTGTTGCCGCAGCTGAAAGAGCGTCAGGTAAAAAGCTAAATCAGCCTAACCGGCACATCGTCCTGAACAGAGCGCGTGCGCAAATTGAGTTGCAGCGTTACGCCGACCGCCAGCGTGCATTACGTGAGGATGAGCGGCAGCAGTCCGATTTTGCCTGGTCACGTCCGCGCGCGCCGCGCCGCTGATTTTGGCTTTTGGCGGTTTAGTGGTGCTGACGCTGCGAAATCACCTGCCATTCACCTGCGTGCATAGCCATGCAGTCGCGCAGAAATCATCAGGGGCGTTTTTCCGGGATACTGGTGAGGAAAGGTGCTGGAAACGGCCCTGATGCAGCAGGATTGCGCTGAGGGCGCCTGCGGGGGTGCGGGCAAGGGATGTTATGTTTAATCGGTCTGACCGTCAGGTACAAAAAAAAGCCCTTAGGGGGCTTTTTTTTTGCTATGAGTTAGCCATATTTTCGTGCGAATTTTTCATCGGAATCGCATAGATAAATAATAAACTCAATAAACGCGATGATCGCGGGTTAGATATTCATCAAATTCCTGTCCAGAATGCAGCATTAGATGGCATGTCGTTGATGCGGTAGGTCAGGATATTCGTCCACTGGAGAAAACGTTTCACAATGCTTGCCAGGAGTCGTACTGGTTAAAAGTAAATCGTCAAACGCATCTCCCGGTGTAAACGCTGAA
ATCTATGCCTGTGTTTTTATACAGTAATGACGCCATGGTAAACCTTATGACGTTATGCGTCAAACCCGCCAGTATGACACCTGCAAATGCGTATTAGATCTGGTGTTTCTTCAGCAAGGCACGTAGCTGATGATAAGTCAGACCCAGTAATTCAGCGGCTTTTTTCTGGTTAAATTTAGCCTGCTGTAAGCTGGTTTGTAGAAAGTCTTTCTCTTGCTGCTGCTGGAATTCACGCAGATCCAGCGTTATAACGATGTGTATCCTATGTGCTCGGATTGGATAGATTTCCATTACGGTGAAGGATCTTCTTGAGATCCTTTCTGTGGCGTCGTAATCTCTTGCTCTGTAAACGAAAAAACCGCCCTGCAAGGCGGTTTTTCGAAGGTTCTCAGAGCAGCAACTCTTTGAACCGTGGTAACTGGCTTACGAGGAGCGCAGTAACCAAATCTGTTCTTTCAGTTTAGCCTTAACAGGCGCATAACTTCAAGACTAACTCCTCTAAATCAGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTTCCGGGTTGGACTCAAGATGATAGTTACCGGATAAGGCGCAGCAGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCATCCAGGAGCGAACTGCCTTCGCGGAACTGAGTGTCAGGCGTGGAATGAGATAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAATGCGGGGGAGCACGAGGGAGCCACCAGGGGGAAACGCCTGGTATCTTTAAGCCGCATCGGGTTTCGCCACCACTGATTTGAGCGTCAGATTTCATGATGTTTGTCAGGGGGGCGGAGCCTATGGAAAAACGGCTTCGCCGCGGCCTTATCTCTTCCCTGTTAAGCTCCTTCCTGGTATCTCCCAGGAAATTTCCGCCCCGCCTGTAAGCCGGCACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAATATATCCTGTACTACATATCCTGCTGACGCGCTGGTGCCGCCTTTTTTCTCCTGCTACATGAAGCACTTCACTGATTTCCACATCCGTGCCAACATAGTCAGCCAGTATACACTCCGCTAGCGCTACGTGACTGGTTCAGGGCTGCGCCCCGAAACCGGCTAAAAGCTAATGACGCGCCTGCGGCTTGTCCAACGCCTCACGGCACCGGATTAAAATCCGCTCCCGTTCACCGTTTCTGACTGCCTTTCACCGTCGCTGGCGCTTCATCGTTTCTACTGTGTCTGGCAGACTGTGCTGATTTATTCTGACTGGAGAACGTTATGGCCAGACTGACAAACTTGACGCCTGCAGAGAAAAAATTTCTTGATGATGCTGTTGCCGCAGCTGAAAGAGCGTCAGGTAAAAAGCTAAATCAGCCTAACCGGCACATCGTCCTGAACAGAGCGCGTGCGCAAATTGAGTTGCAGCGTTACGCCGACCGCCAGCGTGCATTACGTGAGGATGAGCGGCAGCAGTCCGATTTTGCCTGGTCACGTCCGCGCGCGCCGCGCCGCTGATTTTGGCTTTTGGCGGTTTAGTGGTGCTGACGCTGCGAAATCACCTGCCATTCACCTGCGTGCATAGCCATGCAGTCGCGCAGAAATCATCAGGGGCGTTTTTCCGGGATACTGGTGAGGAAAGGTGCTGGAAACGGCCCTGATGCAGCAGGATTGCGCTGAGGGCGCCTGCGGGGGTGCGGGCAAGGGATGTTATGTTTAATCGGTCTGACCGTCAGGTACAAAAAAAAGCCCTTAGGGGGCTTTTTTTTTGCTATGAGTTAGCCATATTTTCGTGCGAATTTTTCATCGGAATCGCATAGATAAATAATAAACTCAATAAACGCGATGATCGCGGGTTAGATATTCATCAAATTCCTGTCCAGAATGCAGCATTAGATGGCATGTCGTTGATGCGGTAGGTCAGGATATTCGTCCACTGGAGAAAACGTTTCACAATGCTTGCCAGGAGTCGTACTGGTTAAAAGTAAATCGTCAAACGCATCTCCCGGTGTAAACGCTGAA
AT-rich region
The information of repeat sequences

Motif CAGGTWAAAARHWAA

StartP-valueSite
13935.13e-09GAAAGAGCGTCAGGTAAAAAGCTAAATCAGCCTAA
20103.29e-08AGGAGTCGTACTGGTTAAAAGTAAATCGTCAAACG
17699.68e-08GTCTGACCGTCAGGTACAAAAAAAAGCCCTTAGGG
11512.91e-07CGCCCCGAAACCGGCTAAAAGCTAATGACGCGCCT
18535.28e-07CGGAATCGCATAGATAAATAATAAACTCAATAAAC

Motif CADAMHBDCMAGHHTGACDCCTGYAAA

StartP-valueSite
612.79e-14CGTTATGCGTCAAACCCGCCAGTATGACACCTGCAAATGCGTATTAG
4772.70e-11TTAACAGGCGCATAACTTCAAGACTAACTCCTCTAAATCAGTTACCA
6854.11e-11ATAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCA
13226.33e-11ACGTTATGGCCAGACTGACAAACTTGACGCCTGCAGAGAAAAAATTT

Motif GSCGCAGCHGWHVGA

StartP-valueSite
9463.60e-09GGCACCGCTCGCCGCAGCCGAACGACCGAGCGCAG
5824.61e-08TACCGGATAAGGCGCAGCAGTCGGACTGAACGGGG
13747.10e-08TGATGCTGTTGCCGCAGCTGAAAGAGCGTCAGGTA
15021.46e-07GTGAGGATGAGCGGCAGCAGTCCGATTTTGCCTGG
8366.62e-07TTGTCAGGGGGGCGGAGCCTATGGAAAAACGGCTT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000116 100.0 2057 0 0 1 2057 1 2057 0.0 3799
pORI00000307 98.303 2062 22 9 1 2057 1 2054 0.0 3602
pORI00000098 99.914 1158 1 0 1 1158 1 1158 0.0 2134
pORI00000098 88.724 337 25 8 1726 2057 2109 2437 0.0 399
pORI00000095 99.914 1158 1 0 1 1158 1 1158 0.0 2134
pORI00000095 98.204 167 3 0 1726 1892 2098 2264 0.0 292
pORI00000095 100.0 44 0 0 2014 2057 2301 2344 3.32e-16 82
pORI00000110 90.011 871 74 12 327 1189 2197 3062 0.0 1114
pORI00000094 86.72 881 89 23 299 1158 1818 945 0.0 953
pORI00000093 86.72 881 89 23 299 1158 902 29 0.0 953
pORI00000061 84.134 895 114 25 305 1189 168 1044 0.0 841
pORI00000244 84.083 867 110 22 302 1158 243 1091 0.0 811
pORI00000086 83.939 853 98 34 354 1192 901 74 0.0 780
pORI00000056 89.502 562 54 5 300 858 1 560 0.0 706
pORI00000043 89.251 521 48 8 344 858 182 700 0.0 645
pORI00000060 79.479 921 128 44 299 1185 2328 1435 0.0 597
pORI00000238 79.393 922 126 47 299 1185 260 1152 0.0 592
pORI00000069 82.853 659 90 21 539 1189 3363 4006 0.0 569
pORI00000198 84.483 580 55 30 301 856 96 664 0.0 540
pORI00000111 82.55 596 72 27 299 872 49 634 0.0 496
pORI00000111 76.604 265 46 16 929 1185 716 972 9.03e-32 134
pORI00000315 82.258 558 70 23 337 872 804 1354 0.0 455
pORI00000315 80.0 255 37 14 939 1185 1447 1695 1.54143e-44 176
pORI00000314 79.198 524 86 18 295 800 21 539 0.0 342
pORI00000314 78.903 237 42 8 927 1158 694 927 6.93e-38 154
pORI00000075 79.198 524 86 18 295 800 21 539 0.0 342
pORI00000075 78.903 237 42 8 927 1158 694 927 6.93e-38 154
pORI00000058 77.946 594 84 38 299 856 10 592 0.0 327
pORI00000058 78.516 256 38 15 939 1185 700 947 2.49e-37 152
pORI00000112 76.797 612 95 40 302 872 974 1579 0.0 305
pORI00000320 76.763 624 89 46 299 877 113 725 0.0 298
pORI00000320 77.344 256 42 14 939 1185 814 1062 6.98e-33 137
pORI00000312 76.763 624 89 46 299 877 113 725 0.0 298
pORI00000312 77.344 256 42 14 939 1185 814 1062 6.98e-33 137
pORI00000224 76.545 631 79 53 299 872 161 779 0.0 281
pORI00000224 100.0 57 0 0 939 995 883 939 1.97e-23 106
pORI00000223 76.545 631 79 53 299 872 161 779 0.0 281
pORI00000223 100.0 57 0 0 939 995 883 939 1.97e-23 106
pORI00000222 76.545 631 79 53 299 872 161 779 0.0 281
pORI00000222 100.0 57 0 0 939 995 883 939 1.97e-23 106
pORI00000097 76.545 631 79 53 299 872 161 779 0.0 281
pORI00000097 100.0 57 0 0 939 995 883 939 1.97e-23 106
pORI00000092 76.545 631 79 53 299 872 161 779 0.0 281
pORI00000092 96.296 54 1 1 939 992 883 935 7.13e-18 88
pORI00000092 100.0 45 0 0 951 995 1007 1051 9.23e-17 84
pORI00000012 76.151 608 101 34 302 872 70 670 0.0 279
pORI00000301 76.387 631 80 53 299 872 161 779 0.0 276
pORI00000301 100.0 57 0 0 939 995 883 939 1.97e-23 106
pORI00000294 76.387 631 80 53 299 872 1150 532 0.0 276
pORI00000294 100.0 57 0 0 939 995 428 372 1.97e-23 106
pORI00000292 76.387 631 80 53 299 872 1150 532 0.0 276
pORI00000292 100.0 57 0 0 939 995 428 372 1.97e-23 106
pORI00000290 76.387 631 80 53 299 872 1141 523 0.0 276
pORI00000290 100.0 57 0 0 939 995 419 363 1.97e-23 106
pORI00000239 76.387 631 80 53 299 872 964 346 0.0 276
pORI00000239 100.0 57 0 0 939 995 242 186 1.97e-23 106
pORI00000309 79.634 383 57 18 509 872 271 651 0.0 255
pORI00000309 78.125 256 40 14 939 1185 743 991 3.23e-36 148
pORI00000022 75.637 628 90 49 299 872 9 627 0.0 254
pORI00000022 77.82 266 43 14 929 1185 710 968 8.97e-37 150
pORI00000308 79.373 383 58 18 509 872 271 651 0.0 250
pORI00000308 98.305 59 1 0 939 997 743 801 7.08e-23 104
pORI00000306 79.221 385 60 17 507 872 910 527 0.0 250
pORI00000334 72.34 940 184 49 300 1192 985 75 0.0 226
pORI00000322 72.34 940 184 49 300 1192 985 75 0.0 226
pORI00000343 79.457 258 35 17 938 1185 301 52 8.90946e-42 167
pORI00001055 86.452 155 15 6 353 503 153 1 3.20001e-41 165
pORI00000284 80.628 191 24 7 679 857 392 203 2.51e-32 135
pORI00000234 80.628 191 24 7 679 857 392 203 2.51e-32 135
pORI00000210 80.628 191 24 7 679 857 392 203 2.51e-32 135
pORI00000209 80.628 191 24 7 679 857 392 203 2.51e-32 135
pORI00000240 76.68 253 35 20 940 1185 1105 1340 2.53e-27 119
pORI00000240 91.111 45 1 1 828 872 1015 1056 5.59e-09 58
pORI00001057 96.667 60 2 0 938 997 761 702 9.16e-22 100
pORI00000947 96.667 60 2 0 938 997 783 724 9.16e-22 100
pORI00000921 96.667 60 2 0 938 997 278 337 9.16e-22 100
pORI00000446 96.667 60 2 0 938 997 278 337 9.16e-22 100
pORI00000072 96.667 60 2 0 938 997 589 530 9.16e-22 100
pORI00000031 96.667 60 2 0 938 997 473 532 9.16e-22 100
pORI00001164 96.61 59 2 0 938 996 875 817 3.3e-21 99
pORI00001144 96.61 59 2 0 938 996 250 308 3.3e-21 99
pORI00001062 96.61 59 2 0 938 996 649 591 3.3e-21 99
pORI00001056 96.61 59 2 0 938 996 875 817 3.3e-21 99
pORI00001020 96.61 59 2 0 938 996 250 308 3.3e-21 99
pORI00001011 96.61 59 2 0 938 996 875 817 3.3e-21 99
pORI00000834 96.61 59 2 0 938 996 875 817 3.3e-21 99
pORI00000702 96.552 58 2 0 938 995 761 704 1.19e-20 97