RefSeq NC_024969
DoriC accession number pORI00000238
OriC length 3327 nt
OriC AT content 0.4836
The location of oriC region 6566..9892 nt
Browse in NCBI
OriC map
OriC sequences
CGTAGGATTCCGCCCCCTCCCGCAAACGACCCCTTATTTGGCGGTGTGACAGGACTTGTTGATGGCGTATTCTGGGGTGGAACCCTGAGACTTTTCATACCCTGGTACAGCAAAAGATGATTGTTAGTAGGTGTATGTATTTATGGGTTTTTATGGGGTTTCATCGGCCATCCCAAAACCCTGATTTTACGATCTATGAAATAGGCCGGTTTAATCTTCAAACGCCTTCATGGATGAAGACGATAATCGCTCCTGTAAAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTCTTGCTCTGAAAACGAAAAAACCACCTGGGGAGGTGGTTTGATCGAAGGTTAGGTCAGTTGGGGAACTGCTTAACCTGGTAACTGTCTTGTGCGAGACGAGTCACCTAAACTGTCCTTCCAGTGTAGCCGCACTCAGGCCCCCACTTCAAGAACTCCAGATAAATCTCTCGCACATCTCAGTTACCAATGGCTACCGCCACTGGCGATTTGTCGTGTCTTTCCGGGTTGGACTCAAGTTGATAGTTACCGGAACGGGCGTGGTAGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTACCCGGAACTGAGTGTCAGGCGTGGAATGAGACAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCTACCAGGGGGAAACGCCTGGGATCTTTATAGTCCTGTCGGGTTTCGCCGCCACTGATTTGAGCGTCAGATTTCGTGATGCTTGTCAGGGGGCGGAGCCTATGGAAAAACGGCTACGCCGCATCCTTTTTCCGGTACTTCCTGATTTGAGCACTGCCTGCGTATCCCGTTATTTGTGAGCCGGTAACGCCCGCCGCAGTCTCACGGCAGGAGCGTAGCGACCGAGTGAGCGAGGAGGCGTCATTTCACCTTTACCTACATGTTGCACTTACGCACGATAGCCACATTTTTCCTTTGCCACATGAAGCACTTCCCTGAATTACCACTCCGATTTAACATATTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGGCTGCGCCCCGACACCCGCTAAAACCCGCTGACGCGCCCTGACGGGCTTGTCGGCTCCCGGCATCCGCTCACAGGCAAGCTGTGTCCGTCTCCGGGAGCTGCCTGTATCAGCCCGTTATGCCATCATCGCCGAAGCGTTCCCGGCAACGTTGGTAGCGTTCATCCGCCACTTCGTGAAGTTGTTCTGGTGAAAAAAACACGTACAGGACGGGGCAGGATGTGCATTTGTCGGACCGCGCACGCGCAATCAGACAAATGCCACCTGGTCAGGGCACAGCCCCGACACCCTGGACAACACCAAAGCAATAAGATAAAACGTACCTGGGCGCGTTTCTCTGCCTCTTTTTTCATCATCTCTGGGATTCGCGCTCACCCGTCCTCTGCTGTCGGGTTTATGTATCCCCGTCGCCCGTGGAGATGAATAACGGGCCGGGGGATTAAAAATCCCCGTGCCGCACAGCCAGCGTTGCATAAAATTCCGCTCTGCGGTGACTATTGTTTAATCAAAAATCCCCGCAGTTCCTCCAGAAAAACGCGAGTCTGTTCTCATTCCCAGGATGCCCACACCCCACGCAAAACTAACTTTTTTCTGATTTGCTTTTTAAATCATGTTGTTATGGTTTGAAAAATATATTTTCTTATTCGGATTTATACAAAAGCGGCTCGTCGGCGACTACTGGATGACTCGGCAACGAGTCGTCGGTGATTTATCGATGACTCAACACACTGTCGCTCTGGTGTTCAGAGAAGGCGAGTCGCCAGAGAGTCGCGAGGAAAAATACTGGATGACTCGCCGACGACTCCCGTAGTGAATCGCTCACGACTCGTCTGTAACTACAGTCTGATTTCTTCTTATCAGGGCTGAAAACGTCCGAAAATACGCCTTATGGGCATCAGACGCGCCCAAACCGATCGCCATTCAGTTTCATGCATAGTCATGCAACGCGCTGAAAGCGTTCCTGACGCATTTTTCCGGTTTACCCGGGGGAAAACATCCATTTTTACGGTTTTTGCGCCAGAAGCGCGCTGAGCGCGTTTTAACGGTGCGTACAATGAACTCTTATGTTAAATCTGACCGTACATGCTTCTGAAGTTACGGTTTCAAAGACCTCAATGCGGCATGTCAGACCGCTGTCACGTTACTGTCGGGTTAAGATCGTGGTCGCGCAGGATTACGCGGTCAACACTGTGTGCTGACCATCTTCCATTCGGAGACAGGAAATGAGTGATACCAACAAATTCAGGTCGCTGCGTCTTGCGCGTGCCTGGTCCCAGGAGCAGCTTGCTGAACTGTCCGGGATGAGCGTGCGCACGGTTCAGCGTATCGAGAACGGCGATCAGCCAAGCCTGGAAACACTGAGTGCCCTGGCTGCTGTATTTGAGGTGAGCGTGGCGGATCTTTCCGGCCCTGATGCGCATGGCGATGACGCTCTTGACCAGAAAATTGCCGAAGCGAAGAGCAAAATAGCTGAGGAAGGCCGTTTTTACCGATCAGTAATTACGGCTGTCGTCGTCTGCGCGCTGTTGCTTGTTCTTAACCACTTTACGGCCCCGGCCAGCGCATGGTCATTTTGGGTTGCGGGGATCTGGTGTGCGCTGCTGGTTATTCGTGGCATGAGAACGTTCGTTTTGCGCGGGCTGATCAGCAGATGGCAACAGAAACGACTGAGGCGGATGCTGCGGCGATAATGGGAATACTTATGGATATTGCAGACTTTTTACGAAATACCCCCGTCTGGGTATGGATCCTGCTGGCTTTTTTACTACGACGCGGTTTTGCTGCTCTTTATGACCGGGAGATGACAACCGGGCGTTTGTTTTTTCTCCCGATACTTTTCCTTGTATGGGGAGCATATGGTGTTATCACTGAGACAAAACTTGCTGGCGTAAGCCTTACAATGATGACGGCAGGACTGCTCGTAGGCACCGCTCTTGGATACAGGTTGTGGCGCTCACAGCCCCCGCTGAGAAATTCAGATAATCCGGGCATGATTATCAGGGCCGGGACACCGCTGACTTTGGGACTGATTGTAATTACTTTTTGCATGAAGTTTATACTTGTCTCAGTCATTGATCTGCACCCCCGGATTACGGTCATCCGCAATTTTTTGCATGTTATTTGGGGTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAAGATTGATGTGTTCCCAGGGGATAGGAGAAGTCGCTTGATAT
CGTAGGATTCCGCCCCCTCCCGCAAACGACCCCTTATTTGGCGGTGTGACAGGACTTGTTGATGGCGTATTCTGGGGTGGAACCCTGAGACTTTTCATACCCTGGTACAGCAAAAGATGATTGTTAGTAGGTGTATGTATTTATGGGTTTTTATGGGGTTTCATCGGCCATCCCAAAACCCTGATTTTACGATCTATGAAATAGGCCGGTTTAATCTTCAAACGCCTTCATGGATGAAGACGATAATCGCTCCTGTAAAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTCTTGCTCTGAAAACGAAAAAACCACCTGGGGAGGTGGTTTGATCGAAGGTTAGGTCAGTTGGGGAACTGCTTAACCTGGTAACTGTCTTGTGCGAGACGAGTCACCTAAACTGTCCTTCCAGTGTAGCCGCACTCAGGCCCCCACTTCAAGAACTCCAGATAAATCTCTCGCACATCTCAGTTACCAATGGCTACCGCCACTGGCGATTTGTCGTGTCTTTCCGGGTTGGACTCAAGTTGATAGTTACCGGAACGGGCGTGGTAGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTACCCGGAACTGAGTGTCAGGCGTGGAATGAGACAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCTACCAGGGGGAAACGCCTGGGATCTTTATAGTCCTGTCGGGTTTCGCCGCCACTGATTTGAGCGTCAGATTTCGTGATGCTTGTCAGGGGGCGGAGCCTATGGAAAAACGGCTACGCCGCATCCTTTTTCCGGTACTTCCTGATTTGAGCACTGCCTGCGTATCCCGTTATTTGTGAGCCGGTAACGCCCGCCGCAGTCTCACGGCAGGAGCGTAGCGACCGAGTGAGCGAGGAGGCGTCATTTCACCTTTACCTACATGTTGCACTTACGCACGATAGCCACATTTTTCCTTTGCCACATGAAGCACTTCCCTGAATTACCACTCCGATTTAACATATTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGGCTGCGCCCCGACACCCGCTAAAACCCGCTGACGCGCCCTGACGGGCTTGTCGGCTCCCGGCATCCGCTCACAGGCAAGCTGTGTCCGTCTCCGGGAGCTGCCTGTATCAGCCCGTTATGCCATCATCGCCGAAGCGTTCCCGGCAACGTTGGTAGCGTTCATCCGCCACTTCGTGAAGTTGTTCTGGTGAAAAAAACACGTACAGGACGGGGCAGGATGTGCATTTGTCGGACCGCGCACGCGCAATCAGACAAATGCCACCTGGTCAGGGCACAGCCCCGACACCCTGGACAACACCAAAGCAATAAGATAAAACGTACCTGGGCGCGTTTCTCTGCCTCTTTTTTCATCATCTCTGGGATTCGCGCTCACCCGTCCTCTGCTGTCGGGTTTATGTATCCCCGTCGCCCGTGGAGATGAATAACGGGCCGGGGGATTAAAAATCCCCGTGCCGCACAGCCAGCGTTGCATAAAATTCCGCTCTGCGGTGACTATTGTTTAATCAAAAATCCCCGCAGTTCCTCCAGAAAAACGCGAGTCTGTTCTCATTCCCAGGATGCCCACACCCCACGCAAAACTAACTTTTTTCTGATTTGCTTTTTAAATCATGTTGTTATGGTTTGAAAAATATATTTTCTTATTCGGATTTATACAAAAGCGGCTCGTCGGCGACTACTGGATGACTCGGCAACGAGTCGTCGGTGATTTATCGATGACTCAACACACTGTCGCTCTGGTGTTCAGAGAAGGCGAGTCGCCAGAGAGTCGCGAGGAAAAATACTGGATGACTCGCCGACGACTCCCGTAGTGAATCGCTCACGACTCGTCTGTAACTACAGTCTGATTTCTTCTTATCAGGGCTGAAAACGTCCGAAAATACGCCTTATGGGCATCAGACGCGCCCAAACCGATCGCCATTCAGTTTCATGCATAGTCATGCAACGCGCTGAAAGCGTTCCTGACGCATTTTTCCGGTTTACCCGGGGGAAAACATCCATTTTTACGGTTTTTGCGCCAGAAGCGCGCTGAGCGCGTTTTAACGGTGCGTACAATGAACTCTTATGTTAAATCTGACCGTACATGCTTCTGAAGTTACGGTTTCAAAGACCTCAATGCGGCATGTCAGACCGCTGTCACGTTACTGTCGGGTTAAGATCGTGGTCGCGCAGGATTACGCGGTCAACACTGTGTGCTGACCATCTTCCATTCGGAGACAGGAAATGAGTGATACCAACAAATTCAGGTCGCTGCGTCTTGCGCGTGCCTGGTCCCAGGAGCAGCTTGCTGAACTGTCCGGGATGAGCGTGCGCACGGTTCAGCGTATCGAGAACGGCGATCAGCCAAGCCTGGAAACACTGAGTGCCCTGGCTGCTGTATTTGAGGTGAGCGTGGCGGATCTTTCCGGCCCTGATGCGCATGGCGATGACGCTCTTGACCAGAAAATTGCCGAAGCGAAGAGCAAAATAGCTGAGGAAGGCCGTTTTTACCGATCAGTAATTACGGCTGTCGTCGTCTGCGCGCTGTTGCTTGTTCTTAACCACTTTACGGCCCCGGCCAGCGCATGGTCATTTTGGGTTGCGGGGATCTGGTGTGCGCTGCTGGTTATTCGTGGCATGAGAACGTTCGTTTTGCGCGGGCTGATCAGCAGATGGCAACAGAAACGACTGAGGCGGATGCTGCGGCGATAATGGGAATACTTATGGATATTGCAGACTTTTTACGAAATACCCCCGTCTGGGTATGGATCCTGCTGGCTTTTTTACTACGACGCGGTTTTGCTGCTCTTTATGACCGGGAGATGACAACCGGGCGTTTGTTTTTTCTCCCGATACTTTTCCTTGTATGGGGAGCATATGGTGTTATCACTGAGACAAAACTTGCTGGCGTAAGCCTTACAATGATGACGGCAGGACTGCTCGTAGGCACCGCTCTTGGATACAGGTTGTGGCGCTCACAGCCCCCGCTGAGAAATTCAGATAATCCGGGCATGATTATCAGGGCCGGGACACCGCTGACTTTGGGACTGATTGTAATTACTTTTTGCATGAAGTTTATACTTGTCTCAGTCATTGATCTGCACCCCCGGATTACGGTCATCCGCAATTTTTTGCATGTTATTTGGGGTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAAGATTGATGTGTTCCCAGGGGATAGGAGAAGTCGCTTGATAT

AT-rich region
The information of repeat sequences

Motif ARCGDCTCGTCGGHRAHTACTGGATGACT

StartP-valueSite
17589.09e-16TTTATACAAAAGCGGCTCGTCGGCGACTACTGGATGACTCGGCAACGAG
17912.57e-13ATGACTCGGCAACGAGTCGTCGGTGATTTATCGATGACTCAACACACTG
19198.88e-13GTGAATCGCTCACGACTCGTCTGTAACTACAGTCTGATTTCTTCTTATC
18631.79e-12GAGTCGCCAGAGAGTCGCGAGGAAAAATACTGGATGACTCGCCGACGAC

Motif AATNAGACAAA

StartP-valueSite
6411.32e-07TCAGGCGTGGAATGAGACAAACGCGGCCATA
13463.73e-07GCGCACGCGCAATCAGACAAATGCCACCTGG
29666.52e-07TGGTGTTATCACTGAGACAAAACTTGCTGGC
14052.27e-06ACACCAAAGCAATAAGATAAAACGTACCTGG
17474.94e-06TCTTATTCGGATTTATACAAAAGCGGCTCGT

Motif AYGAAAAAHCCMCG

StartP-valueSite
16033.07e-08CTATTGTTTAATCAAAAATCCCCGCAGTTCCTCC
15373.31e-08GGGCCGGGGGATTAAAAATCCCCGTGCCGCACAG
3111.17e-07TGCTCTGAAAACGAAAAAACCACCTGGGGAGGTG
28212.22e-07CAGACTTTTTACGAAATACCCCCGTCTGGGTATG
12883.55e-07AGTTGTTCTGGTGAAAAAAACACGTACAGGACGG

The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000238 100.0 3327 0 0 1 3327 1 3327 0.0 6144
pORI00000060 99.875 2407 1 2 34 2438 2554 148 0.0 4427
pORI00000060 99.748 794 0 2 2434 3226 3335 2543 0.0 1454
pORI00000094 83.371 896 105 33 259 1126 1819 940 0.0 789
pORI00000093 83.371 896 105 33 259 1126 903 24 0.0 789
pORI00000069 82.841 880 106 33 305 1152 3136 4002 0.0 747
pORI00000086 84.383 794 81 36 372 1152 844 81 0.0 739
pORI00000244 82.005 878 122 28 263 1127 243 1097 0.0 713
pORI00000061 81.305 904 121 36 266 1152 168 1040 0.0 689
pORI00000198 88.328 574 55 11 262 828 96 664 0.0 678
pORI00000110 81.43 867 121 35 291 1137 2200 3046 0.0 673
pORI00000111 87.167 600 64 13 259 851 48 641 0.0 669
pORI00000111 88.811 143 14 2 1053 1194 872 1013 8.68805e-44 174
pORI00000307 79.37 921 128 45 260 1152 299 1185 0.0 592
pORI00000116 79.37 921 128 45 260 1152 299 1185 0.0 592
pORI00000098 79.576 896 123 43 260 1126 299 1163 0.0 586
pORI00000095 79.576 896 123 43 260 1126 299 1163 0.0 586
pORI00000314 86.64 509 56 11 263 764 27 530 0.0 553
pORI00000314 90.432 324 29 2 805 1126 609 932 0.0 425
pORI00000075 86.64 509 56 11 263 764 27 530 0.0 553
pORI00000075 90.432 324 29 2 805 1126 609 932 0.0 425
pORI00000334 78.448 928 140 37 261 1152 985 82 0.0 551
pORI00000322 78.341 928 141 37 261 1152 985 82 0.0 545
pORI00000056 84.429 578 64 19 261 830 1 560 0.0 545
pORI00000043 94.382 356 19 1 476 830 345 700 0.0 545
pORI00000200 78.956 594 98 21 258 834 105 688 0.0 379
pORI00000008 78.899 545 74 27 259 766 1643 1103 0.0 331
pORI00000008 93.651 63 4 0 904 966 911 849 6.92e-20 95
pORI00000315 96.154 156 5 1 1052 1206 1594 1749 0.0 254
pORI00000058 91.848 184 12 3 1056 1238 852 1033 0.0 254
pORI00000309 96.0 150 6 0 1057 1206 896 1045 0.0 244
pORI00000306 95.425 153 7 0 1057 1209 281 129 0.0 244
pORI00000343 97.203 143 4 0 1058 1200 146 4 0.0 243
pORI00000240 96.575 146 5 0 1057 1202 1245 1390 0.0 243
pORI00000286 78.63 365 58 13 478 828 503 145 0.0 224
pORI00000012 92.0 150 10 2 1057 1206 916 1063 0.0 209
pORI00000022 89.51 143 13 2 1053 1194 868 1009 1.4013e-45 180
pORI00000320 89.855 138 13 1 1057 1194 967 1103 2.38221e-44 176
pORI00000312 89.855 138 13 1 1057 1194 967 1103 2.38221e-44 176
pORI00000284 84.293 191 17 7 651 829 392 203 8.68805e-44 174
pORI00000234 84.293 191 17 7 651 829 392 203 8.68805e-44 174
pORI00000210 84.293 191 17 7 651 829 392 203 8.68805e-44 174
pORI00000209 84.293 191 17 7 651 829 392 203 8.68805e-44 174
pORI00000223 92.453 106 8 0 1106 1211 1488 1593 4.05e-37 152
pORI00000097 92.453 106 8 0 1106 1211 2008 2113 4.05e-37 152
pORI00000092 92.453 106 8 0 1106 1211 1872 1977 4.05e-37 152
pORI00000112 96.386 83 3 0 1057 1139 1825 1907 8.77e-34 141
pORI00000181 96.667 60 2 0 1058 1117 784 725 1.49e-21 100
pORI00000124 93.548 62 2 1 1058 1117 783 844 8.96e-19 92
pORI00000011 93.333 60 3 1 1058 1117 784 842 1.16e-17 88