DoriC

RefSeq

NC_024969

DoriC accession number

pORI00000238

OriC length

3327 nt

OriC AT content

0.4836

The location of oriC region

6566..9892 nt

Browse in NCBI

OriC map

OriC sequences

CGTAGGATTCCGCCCCCTCCCGCAAACGACCCCTTATTTGGCGGTGTGACAGGACTTGTTGATGGCGTATTCTGGGGTGGAACCCTGAGACTTTTCATACCCTGGTACAGCAAAAGATGATTGTTAGTAGGTGTATGTATTTATGGGTTTTTATGGGGTTTCATCGGCCATCCCAAAACCCTGATTTTACGATCTATGAAATAGGCCGGTTTAATCTTCAAACGCCTTCATGGATGAAGACGATAATCGCTCCTGTAAAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTCTTGCTCTGAAAACGAAAAAACCACCTGGGGAGGTGGTTTGATCGAAGGTTAGGTCAGTTGGGGAACTGCTTAACCTGGTAACTGTCTTGTGCGAGACGAGTCACCTAAACTGTCCTTCCAGTGTAGCCGCACTCAGGCCCCCACTTCAAGAACTCCAGATAAATCTCTCGCACATCTCAGTTACCAATGGCTACCGCCACTGGCGATTTGTCGTGTCTTTCCGGGTTGGACTCAAGTTGATAGTTACCGGAACGGGCGTGGTAGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTACCCGGAACTGAGTGTCAGGCGTGGAATGAGACAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCTACCAGGGGGAAACGCCTGGGATCTTTATAGTCCTGTCGGGTTTCGCCGCCACTGATTTGAGCGTCAGATTTCGTGATGCTTGTCAGGGGGCGGAGCCTATGGAAAAACGGCTACGCCGCATCCTTTTTCCGGTACTTCCTGATTTGAGCACTGCCTGCGTATCCCGTTATTTGTGAGCCGGTAACGCCCGCCGCAGTCTCACGGCAGGAGCGTAGCGACCGAGTGAGCGAGGAGGCGTCATTTCACCTTTACCTACATGTTGCACTTACGCACGATAGCCACATTTTTCCTTTGCCACATGAAGCACTTCCCTGAATTACCACTCCGATTTAACATATTAAGCCAGTATACACTCCGCTATCGCTACGTGACTGGGTCATGGCTGCGCCCCGACACCCGCTAAAACCCGCTGACGCGCCCTGACGGGCTTGTCGGCTCCCGGCATCCGCTCACAGGCAAGCTGTGTCCGTCTCCGGGAGCTGCCTGTATCAGCCCGTTATGCCATCATCGCCGAAGCGTTCCCGGCAACGTTGGTAGCGTTCATCCGCCACTTCGTGAAGTTGTTCTGGTGAAAAAAACACGTACAGGACGGGGCAGGATGTGCATTTGTCGGACCGCGCACGCGCAATCAGACAAATGCCACCTGGTCAGGGCACAGCCCCGACACCCTGGACAACACCAAAGCAATAAGATAAAACGTACCTGGGCGCGTTTCTCTGCCTCTTTTTTCATCATCTCTGGGATTCGCGCTCACCCGTCCTCTGCTGTCGGGTTTATGTATCCCCGTCGCCCGTGGAGATGAATAACGGGCCGGGGGATTAAAAATCCCCGTGCCGCACAGCCAGCGTTGCATAAAATTCCGCTCTGCGGTGACTATTGTTTAATCAAAAATCCCCGCAGTTCCTCCAGAAAAACGCGAGTCTGTTCTCATTCCCAGGATGCCCACACCCCACGCAAAACTAACTTTTTTCTGATTTGCTTTTTAAATCATGTTGTTATGGTTTGAAAAATATATTTTCTTATTCGGATTTATACAAAAGCGGCTCGTCGGCGACTACTGGATGACTCGGCAACGAGTCGTCGGTGATTTATCGATGACTCAACACACTGTCGCTCTGGTGTTCAGAGAAGGCGAGTCGCCAGAGAGTCGCGAGGAAAAATACTGGATGACTCGCCGACGACTCCCGTAGTGAATCGCTCACGACTCGTCTGTAACTACAGTCTGATTTCTTCTTATCAGGGCTGAAAACGTCCGAAAATACGCCTTATGGGCATCAGACGCGCCCAAACCGATCGCCATTCAGTTTCATGCATAGTCATGCAACGCGCTGAAAGCGTTCCTGACGCATTTTTCCGGTTTACCCGGGGGAAAACATCCATTTTTACGGTTTTTGCGCCAGAAGCGCGCTGAGCGCGTTTTAACGGTGCGTACAATGAACTCTTATGTTAAATCTGACCGTACATGCTTCTGAAGTTACGGTTTCAAAGACCTCAATGCGGCATGTCAGACCGCTGTCACGTTACTGTCGGGTTAAGATCGTGGTCGCGCAGGATTACGCGGTCAACACTGTGTGCTGACCATCTTCCATTCGGAGACAGGAAATGAGTGATACCAACAAATTCAGGTCGCTGCGTCTTGCGCGTGCCTGGTCCCAGGAGCAGCTTGCTGAACTGTCCGGGATGAGCGTGCGCACGGTTCAGCGTATCGAGAACGGCGATCAGCCAAGCCTGGAAACACTGAGTGCCCTGGCTGCTGTATTTGAGGTGAGCGTGGCGGATCTTTCCGGCCCTGATGCGCATGGCGATGACGCTCTTGACCAGAAAATTGCCGAAGCGAAGAGCAAAATAGCTGAGGAAGGCCGTTTTTACCGATCAGTAATTACGGCTGTCGTCGTCTGCGCGCTGTTGCTTGTTCTTAACCACTTTACGGCCCCGGCCAGCGCATGGTCATTTTGGGTTGCGGGGATCTGGTGTGCGCTGCTGGTTATTCGTGGCATGAGAACGTTCGTTTTGCGCGGGCTGATCAGCAGATGGCAACAGAAACGACTGAGGCGGATGCTGCGGCGATAATGGGAATACTTATGGATATTGCAGACTTTTTACGAAATACCCCCGTCTGGGTATGGATCCTGCTGGCTTTTTTACTACGACGCGGTTTTGCTGCTCTTTATGACCGGGAGATGACAACCGGGCGTTTGTTTTTTCTCCCGATACTTTTCCTTGTATGGGGAGCATATGGTGTTATCACTGAGACAAAACTTGCTGGCGTAAGCCTTACAATGATGACGGCAGGACTGCTCGTAGGCACCGCTCTTGGATACAGGTTGTGGCGCTCACAGCCCCCGCTGAGAAATTCAGATAATCCGGGCATGATTATCAGGGCCGGGACACCGCTGACTTTGGGACTGATTGTAATTACTTTTTGCATGAAGTTTATACTTGTCTCAGTCATTGATCTGCACCCCCGGATTACGGTCATCCGCAATTTTTTGCATGTTATTTGGGGTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAAGATTGATGTGTTCCCAGGGGATAGGAGAAGTCGCTTGATAT

AT-rich region

The information of repeat sequences

Motif ARCGDCTCGTCGGHRAHTACTGGATGACT

Start	P-value		Site
1758	9.09e-16	TTTATACAAA	AGCGGCTCGTCGGCGACTACTGGATGACT	CGGCAACGAG
1791	2.57e-13	ATGACTCGGC	AACGAGTCGTCGGTGATTTATCGATGACT	CAACACACTG
1919	8.88e-13	GTGAATCGCT	CACGACTCGTCTGTAACTACAGTCTGATT	TCTTCTTATC
1863	1.79e-12	GAGTCGCCAG	AGAGTCGCGAGGAAAAATACTGGATGACT	CGCCGACGAC

Motif AATNAGACAAA

Start	P-value		Site
641	1.32e-07	TCAGGCGTGG	AATGAGACAAA	CGCGGCCATA
1346	3.73e-07	GCGCACGCGC	AATCAGACAAA	TGCCACCTGG
2966	6.52e-07	TGGTGTTATC	ACTGAGACAAA	ACTTGCTGGC
1405	2.27e-06	ACACCAAAGC	AATAAGATAAA	ACGTACCTGG
1747	4.94e-06	TCTTATTCGG	ATTTATACAAA	AGCGGCTCGT

Motif AYGAAAAAHCCMCG

Start	P-value		Site
1603	3.07e-08	CTATTGTTTA	ATCAAAAATCCCCG	CAGTTCCTCC
1537	3.31e-08	GGGCCGGGGG	ATTAAAAATCCCCG	TGCCGCACAG
311	1.17e-07	TGCTCTGAAA	ACGAAAAAACCACC	TGGGGAGGTG
2821	2.22e-07	CAGACTTTTT	ACGAAATACCCCCG	TCTGGGTATG
1288	3.55e-07	AGTTGTTCTG	GTGAAAAAAACACG	TACAGGACGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000238	100.0	3327	0	0	1	3327	1	3327	0.0	6144
pORI00000060	99.875	2407	1	2	34	2438	2554	148	0.0	4427
pORI00000060	99.748	794	0	2	2434	3226	3335	2543	0.0	1454
pORI00000094	83.371	896	105	33	259	1126	1819	940	0.0	789
pORI00000093	83.371	896	105	33	259	1126	903	24	0.0	789
pORI00000069	82.841	880	106	33	305	1152	3136	4002	0.0	747
pORI00000086	84.383	794	81	36	372	1152	844	81	0.0	739
pORI00000244	82.005	878	122	28	263	1127	243	1097	0.0	713
pORI00000061	81.305	904	121	36	266	1152	168	1040	0.0	689
pORI00000198	88.328	574	55	11	262	828	96	664	0.0	678
pORI00000110	81.43	867	121	35	291	1137	2200	3046	0.0	673
pORI00000111	87.167	600	64	13	259	851	48	641	0.0	669
pORI00000111	88.811	143	14	2	1053	1194	872	1013	8.68805e-44	174
pORI00000307	79.37	921	128	45	260	1152	299	1185	0.0	592
pORI00000116	79.37	921	128	45	260	1152	299	1185	0.0	592
pORI00000098	79.576	896	123	43	260	1126	299	1163	0.0	586
pORI00000095	79.576	896	123	43	260	1126	299	1163	0.0	586
pORI00000314	86.64	509	56	11	263	764	27	530	0.0	553
pORI00000314	90.432	324	29	2	805	1126	609	932	0.0	425
pORI00000075	86.64	509	56	11	263	764	27	530	0.0	553
pORI00000075	90.432	324	29	2	805	1126	609	932	0.0	425
pORI00000334	78.448	928	140	37	261	1152	985	82	0.0	551
pORI00000322	78.341	928	141	37	261	1152	985	82	0.0	545
pORI00000056	84.429	578	64	19	261	830	1	560	0.0	545
pORI00000043	94.382	356	19	1	476	830	345	700	0.0	545
pORI00000200	78.956	594	98	21	258	834	105	688	0.0	379
pORI00000008	78.899	545	74	27	259	766	1643	1103	0.0	331
pORI00000008	93.651	63	4	0	904	966	911	849	6.92e-20	95
pORI00000315	96.154	156	5	1	1052	1206	1594	1749	0.0	254
pORI00000058	91.848	184	12	3	1056	1238	852	1033	0.0	254
pORI00000309	96.0	150	6	0	1057	1206	896	1045	0.0	244
pORI00000306	95.425	153	7	0	1057	1209	281	129	0.0	244
pORI00000343	97.203	143	4	0	1058	1200	146	4	0.0	243
pORI00000240	96.575	146	5	0	1057	1202	1245	1390	0.0	243
pORI00000286	78.63	365	58	13	478	828	503	145	0.0	224
pORI00000012	92.0	150	10	2	1057	1206	916	1063	0.0	209
pORI00000022	89.51	143	13	2	1053	1194	868	1009	1.4013e-45	180
pORI00000320	89.855	138	13	1	1057	1194	967	1103	2.38221e-44	176
pORI00000312	89.855	138	13	1	1057	1194	967	1103	2.38221e-44	176
pORI00000284	84.293	191	17	7	651	829	392	203	8.68805e-44	174
pORI00000234	84.293	191	17	7	651	829	392	203	8.68805e-44	174
pORI00000210	84.293	191	17	7	651	829	392	203	8.68805e-44	174
pORI00000209	84.293	191	17	7	651	829	392	203	8.68805e-44	174
pORI00000223	92.453	106	8	0	1106	1211	1488	1593	4.05e-37	152
pORI00000097	92.453	106	8	0	1106	1211	2008	2113	4.05e-37	152
pORI00000092	92.453	106	8	0	1106	1211	1872	1977	4.05e-37	152
pORI00000112	96.386	83	3	0	1057	1139	1825	1907	8.77e-34	141
pORI00000181	96.667	60	2	0	1058	1117	784	725	1.49e-21	100
pORI00000124	93.548	62	2	1	1058	1117	783	844	8.96e-19	92
pORI00000011	93.333	60	3	1	1058	1117	784	842	1.16e-17	88