RefSeq NC_019052
DoriC accession number pORI00000224
OriC length 1776 nt
OriC AT content 0.5304
The location of oriC region 1..1776 nt
Browse in NCBI
OriC map
OriC sequences
CTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTTCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCTTAGAAAATACGGCAACACCGCTTGGTAATTCGTTCTATTATGGAAAAGGATTAATTAACGTTCAAGCAGCTTCTAACTAAAATAAGTGCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATAAATTCCTTAAGGAACGTACAGACGGCTTAAAAGCCTTTAAAAACGTTTTTAAGGGGTTTGTAGACAAGGTAAAGGATAAAACAGCACAATTCCAAGAAAAACACGATTTAGAACCTAAAAAGAACGAATTTGAACTAACTCATAACCGAGAGGTAAAAAAAGAACGAAGTCGAGATCAGGGAATGAGTTTATAAAATAAAAAAAGCACCTGAAAAGGTGTCTTTTTTTGATGGTTTTGAACTTGTTCTTTCTTATCTTGATACATATAGAAATAACGTCATTTTTATTTTAGTTGCTGAAAGGTGCGTTGAAGTGTTGGTATGTATGTGTTTTAAAGTATTGAAAACCCTTAAAATTGGTTGCACAGAAAAACCCCATCTGTTAAAGTTATAAGTGACTAAACAAATAACTAAATAG
CTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTTCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCTTAGAAAATACGGCAACACCGCTTGGTAATTCGTTCTATTATGGAAAAGGATTAATTAACGTTCAAGCAGCTTCTAACTAAAATAAGTGCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATAAATTCCTTAAGGAACGTACAGACGGCTTAAAAGCCTTTAAAAACGTTTTTAAGGGGTTTGTAGACAAGGTAAAGGATAAAACAGCACAATTCCAAGAAAAACACGATTTAGAACCTAAAAAGAACGAATTTGAACTAACTCATAACCGAGAGGTAAAAAAAGAACGAAGTCGAGATCAGGGAATGAGTTTATAAAATAAAAAAAGCACCTGAAAAGGTGTCTTTTTTTGATGGTTTTGAACTTGTTCTTTCTTATCTTGATACATATAGAAATAACGTCATTTTTATTTTAGTTGCTGAAAGGTGCGTTGAAGTGTTGGTATGTATGTGTTTTAAAGTATTGAAAACCCTTAAAATTGGTTGCACAGAAAAACCCCATCTGTTAAAGTTATAAGTGACTAAACAAATAACTAAATAG
AT-rich region
The information of repeat sequences

Motif GCTDCCAGBGG

StartP-valueSite
4093.66e-07ACCAGTGGCTGCTGCCAGTGGCGATAAGTCG
2259.07e-07AAAAACCACCGCTACCAGCGGTGGTTTGTTT
6511.77e-06GCACGAGGGAGCTTCCAGGGGGAAACGCCTG
3961.77e-06TGCTAATCCTGTTACCAGTGGCTGCTGCCAG

Motif ACACGRCTTAAAHBCCTTAAAGAACGT

StartP-valueSite
13502.15e-12GCGGTATTTCACACCGCATAAATTCCTTAAGGAACGTACAGACGGCT
13792.43e-12AGGAACGTACAGACGGCTTAAAAGCCTTTAAAAACGTTTTTAAGGGG
14604.50e-10TCCAAGAAAAACACGATTTAGAACCTAAAAAGAACGAATTTGAACTA
11956.37e-10CCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCG
951.33e-09TTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCA

Motif MGBGVGGYGRCSNMTTHRNDAANACGSCAGCAMCGM

StartP-valueSite
10253.38e-15GACTGGAAAGCGGGCAGTGAGCGCTTAGAAAATACGGCAACACCGCTTGGTAATTC
7386.14e-13GATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTA
12303.09e-12ATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCC
9694.69e-12CGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCC
3354.69e-12GTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000224 100.0 1776 0 0 1 1776 1 1776 0.0 3280
pORI00000223 100.0 1038 0 0 1 1038 1 1038 0.0 1917
pORI00000223 100.0 418 0 0 1359 1776 1624 2041 0.0 773
pORI00000223 100.0 232 0 0 1128 1359 1209 1440 0.0 429
pORI00000222 100.0 1038 0 0 1 1038 1 1038 0.0 1917
pORI00000097 100.0 1038 0 0 1 1038 1 1038 0.0 1917
pORI00000097 100.0 232 0 0 1128 1359 1729 1960 0.0 429
pORI00000301 99.904 1038 1 0 1 1038 1 1038 0.0 1912
pORI00000294 99.799 995 2 0 1 995 1310 316 0.0 1827
pORI00000292 99.799 995 2 0 1 995 1310 316 0.0 1827
pORI00000290 99.799 995 2 0 1 995 1301 307 0.0 1827
pORI00000092 99.306 1008 1 6 1 1008 1 1002 0.0 1818
pORI00000092 100.0 232 0 0 1128 1359 1593 1824 0.0 429
pORI00000092 100.0 144 0 0 895 1038 1007 1150 0.0 267
pORI00000239 99.894 946 1 0 1 946 1124 179 0.0 1742
pORI00000239 100.0 55 0 0 1305 1359 183 129 2.2e-22 102
pORI00000306 93.898 803 32 9 148 946 1160 371 0.0 1195
pORI00000320 92.839 796 32 15 151 944 103 875 0.0 1131
pORI00000312 92.839 796 32 15 151 944 103 875 0.0 1131
pORI00000112 91.349 786 41 17 164 946 974 1735 0.0 1055
pORI00000022 90.164 793 55 15 160 946 8 783 0.0 1011
pORI00000012 87.438 804 64 26 148 946 55 826 0.0 891
pORI00000343 87.016 801 72 20 148 943 1013 240 0.0 874
pORI00000058 87.234 799 62 28 152 946 1 763 0.0 874
pORI00000315 93.478 552 23 6 396 946 971 1510 0.0 808
pORI00000315 98.182 55 1 0 1305 1359 1506 1560 1.02e-20 97
pORI00000309 93.091 550 23 9 398 946 271 806 0.0 791
pORI00000308 92.727 550 25 9 398 946 271 806 0.0 780
pORI00000111 84.603 643 51 26 306 946 192 788 0.0 597
pORI00000488 99.237 262 2 0 1360 1621 888 1149 0.0 473
pORI00000008 81.283 561 81 22 152 700 1651 1103 0.0 433
pORI00000236 99.552 223 1 0 1554 1776 223 1 0.0 407
pORI00000094 81.148 488 56 25 279 763 1702 1248 0.0 359
pORI00000094 98.276 58 1 0 882 939 1165 1108 2.2e-22 102
pORI00000093 81.148 488 56 25 279 763 786 332 0.0 359
pORI00000093 98.276 58 1 0 882 939 249 192 2.2e-22 102
pORI00000086 83.375 397 43 19 388 782 753 378 0.0 346
pORI00000198 80.567 494 54 30 278 765 209 666 0.0 342
pORI00000043 83.505 388 41 17 396 780 348 715 0.0 340
pORI00000110 82.741 394 46 18 388 779 2372 2745 0.0 331
pORI00000110 100.0 57 0 0 883 939 2812 2868 1.7e-23 106
pORI00000060 77.259 642 92 40 160 791 2329 1732 0.0 327
pORI00000060 100.0 147 0 0 1 147 1 147 0.0 272
pORI00000060 100.0 34 0 0 115 148 3368 3335 1.04e-10 64
pORI00000244 83.243 370 40 16 396 763 448 797 0.0 320
pORI00000300 99.425 174 1 0 1603 1776 55 228 0.0 316
pORI00000061 82.188 393 47 17 396 786 372 743 0.0 316
pORI00000293 98.276 174 3 0 1603 1776 174 1 0.0 305
pORI00000291 98.276 174 3 0 1603 1776 174 1 0.0 305
pORI00000289 98.276 174 3 0 1603 1776 174 1 0.0 305
pORI00000056 82.385 369 46 15 396 763 208 558 0.0 303
pORI00000307 76.471 629 83 50 161 779 299 872 0.0 281
pORI00000307 100.0 57 0 0 883 939 939 995 1.7e-23 106
pORI00000116 76.471 629 83 50 161 779 299 872 0.0 281
pORI00000116 100.0 57 0 0 883 939 939 995 1.7e-23 106
pORI00000098 76.471 629 83 50 161 779 299 872 0.0 281
pORI00000098 100.0 57 0 0 883 939 939 995 1.7e-23 106
pORI00000095 76.471 629 83 50 161 779 299 872 0.0 281
pORI00000095 100.0 57 0 0 883 939 939 995 1.7e-23 106
pORI00000069 76.768 495 78 28 306 786 3232 3703 0.0 243
pORI00000284 85.034 147 10 5 628 763 349 204 1.67e-33 139
pORI00000234 85.034 147 10 5 628 763 349 204 1.67e-33 139
pORI00000210 85.034 147 10 5 628 763 349 204 1.67e-33 139
pORI00000209 85.034 147 10 5 628 763 349 204 1.67e-33 139
pORI00001057 95.082 61 3 0 883 943 760 700 1.02e-20 97
pORI00000947 95.082 61 3 0 883 943 782 722 1.02e-20 97
pORI00000921 89.474 76 8 0 868 943 264 339 1.02e-20 97
pORI00000702 95.082 61 3 0 883 943 760 700 1.02e-20 97
pORI00000446 89.474 76 8 0 868 943 264 339 1.02e-20 97
pORI00000072 95.082 61 3 0 883 943 588 528 1.02e-20 97
pORI00000031 89.474 76 8 0 868 943 459 534 1.02e-20 97
pORI00001164 96.491 57 2 0 883 939 874 818 3.67e-20 95
pORI00001144 90.278 72 7 0 868 939 236 307 3.67e-20 95
pORI00001062 96.491 57 2 0 883 939 648 592 3.67e-20 95
pORI00001056 96.491 57 2 0 883 939 874 818 3.67e-20 95
pORI00001020 90.278 72 7 0 868 939 236 307 3.67e-20 95
pORI00001011 96.491 57 2 0 883 939 874 818 3.67e-20 95
pORI00000834 96.491 57 2 0 883 939 874 818 3.67e-20 95
pORI00000240 81.818 110 15 4 837 946 1058 1162 6.15e-18 88
pORI00000240 86.441 59 5 1 722 780 1002 1057 3.73e-10 62
pORI00000280 93.333 45 1 2 1602 1645 651 694 2.88e-11 66