DoriC

RefSeq

NZ_CP020836

DoriC accession number

pORI00000947

OriC length

1062 nt

OriC AT content

0.6064

The location of oriC region

20090..21151 nt

Browse in NCBI

OriC map

OriC sequences

ACATTACCTGTGTTTTTTAAGTTCTGATGGTGAAATCATAACCACAAAAGCGGAAATGTGTAAAGTGGTTTATCCACCTTATATATTTCCACCAAAACTCGGATCACATGAAAGAATTTTTATCATTTATATTCAATATGATAGAAATGCGCAGGCATCCACCTTTTAACGTCATACGTTAAATTAGAGCACTATAAAGAACTAAAGAAATGAAGATACAAAGATACGAATATCTGAATAAAAACAGAAAAATGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCAGTGCGCAGCCATCCACCTTTCATGAAAATTACAGTGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCATTTTGAGGCGACAAAAAACAACAACTATCTTAATGAAATTATTGATAAAAAACTTGGCACAATGTTTGCAGAATAAGTTAAAATAAGTTAAAGATCTTAAAGTAGATCTACCGATCTACATTTAAGATCTTAAAAACAAGAAGTTTAATAAGCAAAAAAACACAAAAAATCTGTGGATAACTCTGCTCAAAACAAAAAATTCACAGTGCCTGTGGATAACTTTGCGTAAACCCGGAGGACAGATCACGCTGAACCAGGACAACCACACATAAAAACAACATGCTCGCTTTTTAACCACTGTGCGTAAGTGCCTGATGTAATCCCTGTGCTATTCCGCTTCCTCGCTCACTAACTCGCTACGCTCGGTCGTTCGGCTGCGGCGAGCGGTGTCTCCTTTCTCAAAACCAGAAGAGTTCAGATCATACGATCCGTTGATTGATCCTTTTTGGATCTTTCACTGAGAAGCCCTGAATCGCTTTCTGTCGCTTCGTTCGATACAACCATGGTTTTAAAAACCATGCGAAATCGAAAAAATCACTCAGAATGCGATACAGCGCGTTTTAGAGGGTATTTACAAAACAGTCGTTGCCTTGAGGAAATTTTGATCAAAATTGAACTTCTATCCGGATCATGGCAACAGATCACAGCAACAAGGCCGCTAAAAAGCG

AT-rich region

The information of repeat sequences

Motif GTGCGTACCCATCCACCTTTC

Start	P-value		Site
373	1.03e-13	CCACCTTTCA	GTGCGTACCCATCCACCTTTC	ATTTTGAGGC
351	1.03e-13	GAAAATTACA	GTGCGTACCCATCCACCTTTC	AGTGCGTACC
296	1.03e-13	CCACCTTTCA	GTGCGTACCCATCCACCTTTC	AGTGCGCAGC
274	1.03e-13	CCACCTTTCA	GTGCGTACCCATCCACCTTTC	AGTGCGTACC
318	3.31e-13	CCACCTTTCA	GTGCGCAGCCATCCACCTTTC	ATGAAAATTA

Motif TKTKRAHAACTNTGCGHAA

Start	P-value		Site
605	1.32e-11	TCACAGTGCC	TGTGGATAACTTTGCGTAA	ACCCGGAGGA
566	1.51e-09	ACAAAAAATC	TGTGGATAACTCTGCTCAA	AACAAAAAAT
683	2.77e-09	CATGCTCGCT	TTTTAACCACTGTGCGTAA	GTGCCTGATG
901	1.36e-08	ACAACCATGG	TTTTAAAAACCATGCGAAA	TCGAAAAAAT

Motif KGCGHASSSWKYCWCCTTT

Start	P-value		Site
148	2.52e-11	ATGATAGAAA	TGCGCAGGCATCCACCTTT	TAACGTCATA
253	1.45e-10	AACAGAAAAA	TGCGTACCCATCCACCTTT	CAGTGCGTAC
773	1.04e-09	GTTCGGCTGC	GGCGAGCGGTGTCTCCTTT	CTCAAAACCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000947	100.0	1062	0	0	1	1062	1	1062	0.0	1962
pORI00000947	84.848	99	4	1	297	395	253	340	1.02e-18	90
pORI00000947	84.848	99	4	1	253	340	297	395	1.02e-18	90
pORI00000947	97.959	49	1	0	346	394	269	317	1.31e-17	86
pORI00000947	97.959	49	1	0	269	317	346	394	1.31e-17	86
pORI00000947	100.0	43	0	0	352	394	253	295	6.11e-16	81
pORI00000947	100.0	43	0	0	253	295	352	394	6.11e-16	81
pORI00000921	97.363	1062	4	2	1	1062	1038	1	0.0	1784
pORI00000921	100.0	46	0	0	272	317	712	667	1.31e-17	86
pORI00000921	100.0	43	0	0	253	295	709	667	6.11e-16	81
pORI00000921	100.0	43	0	0	352	394	786	744	6.11e-16	81
pORI00000921	95.745	47	2	0	349	395	767	721	7.91e-15	77
pORI00001057	96.987	1062	8	2	1	1062	1	1038	0.0	1762
pORI00001057	100.0	43	0	0	352	394	253	295	6.11e-16	81
pORI00001057	95.918	49	2	0	269	317	324	372	6.11e-16	81
pORI00001057	94.0	50	3	0	346	395	269	318	7.91e-15	77
pORI00001057	97.674	43	1	0	253	295	330	372	2.84e-14	75
pORI00000031	95.292	1062	24	2	1	1062	1233	198	0.0	1661
pORI00000031	97.826	46	1	0	272	317	907	862	6.11e-16	81
pORI00000031	100.0	43	0	0	352	394	981	939	6.11e-16	81
pORI00000031	95.745	47	2	0	349	395	962	916	7.91e-15	77
pORI00000031	97.674	43	1	0	253	295	904	862	2.84e-14	75
pORI00000446	95.292	1062	4	3	1	1062	1016	1	0.0	1642
pORI00000446	100.0	43	0	0	352	394	764	722	6.11e-16	81
pORI00000446	95.745	47	2	0	349	395	745	699	7.91e-15	77
pORI00000702	94.256	1062	35	2	1	1062	1	1036	0.0	1600
pORI00000702	97.959	49	1	0	269	317	324	372	1.31e-17	86
pORI00000702	100.0	43	0	0	352	394	253	295	6.11e-16	81
pORI00000702	100.0	43	0	0	253	295	330	372	6.11e-16	81
pORI00000702	94.0	50	3	0	346	395	269	318	7.91e-15	77
pORI00000421	93.293	656	38	4	408	1062	848	198	0.0	963
pORI00000072	96.186	472	14	2	591	1062	397	864	0.0	769
pORI00000990	93.644	472	27	1	591	1062	809	341	0.0	702
pORI00000834	82.217	821	110	22	254	1062	355	1151	0.0	675
pORI00001062	91.525	472	36	3	591	1062	457	924	0.0	647
pORI00001164	81.738	794	109	22	254	1035	355	1124	0.0	630
pORI00001144	81.552	786	111	20	261	1035	763	1	0.0	617
pORI00001056	81.552	786	111	20	261	1035	362	1124	0.0	617
pORI00001020	81.552	786	111	20	261	1035	763	1	0.0	617
pORI00001011	81.552	786	111	20	261	1035	362	1124	0.0	617
pORI00000343	92.308	78	6	0	721	798	239	316	2.17e-25	111
pORI00000308	98.361	61	1	0	722	782	803	743	2.8e-24	108
pORI00000094	98.305	59	1	0	724	782	1106	1164	3.63e-23	104
pORI00000093	98.305	59	1	0	724	782	190	248	3.63e-23	104
pORI00000914	92.958	71	3	1	725	795	710	642	1.3e-22	102
pORI00000595	92.958	71	3	1	725	795	710	642	1.3e-22	102
pORI00000478	92.958	71	3	1	725	795	354	286	1.3e-22	102
pORI00000320	90.789	76	7	0	722	797	874	799	1.3e-22	102
pORI00000315	90.789	76	7	0	722	797	1507	1432	1.3e-22	102
pORI00000312	90.789	76	7	0	722	797	874	799	1.3e-22	102
pORI00000309	90.789	76	7	0	722	797	803	728	1.3e-22	102
pORI00000307	96.667	60	2	0	724	783	997	938	4.69e-22	100
pORI00000116	96.667	60	2	0	724	783	997	938	4.69e-22	100
pORI00000111	95.238	63	3	0	727	789	781	719	4.69e-22	100
pORI00000110	96.667	60	2	0	724	783	2870	2811	4.69e-22	100
pORI00000098	96.667	60	2	0	724	783	997	938	4.69e-22	100
pORI00000095	96.667	60	2	0	724	783	997	938	4.69e-22	100
pORI00000301	89.474	76	8	0	722	797	943	868	6.07e-21	97
pORI00000294	95.082	61	3	0	722	782	368	428	6.07e-21	97
pORI00000292	95.082	61	3	0	722	782	368	428	6.07e-21	97
pORI00000290	95.082	61	3	0	722	782	359	419	6.07e-21	97
pORI00000239	95.082	61	3	0	722	782	182	242	6.07e-21	97
pORI00000224	89.474	76	8	0	722	797	943	868	6.07e-21	97
pORI00000223	89.474	76	8	0	722	797	943	868	6.07e-21	97
pORI00000222	89.474	76	8	0	722	797	943	868	6.07e-21	97
pORI00000097	89.474	76	8	0	722	797	943	868	6.07e-21	97
pORI00000058	89.474	76	8	0	722	797	760	685	6.07e-21	97
pORI00000240	92.424	66	3	2	733	798	1151	1088	7.85e-20	94
pORI00000092	86.957	69	8	1	729	797	935	868	7.91e-15	77