DoriC

RefSeq

NC_025157

DoriC accession number

pORI00000306

OriC length

1341 nt

OriC AT content

0.4899

The location of oriC region

1556..1213 nt

Browse in NCBI

OriC map

OriC sequences

ATCCCTAACACCTCATTTATAGTATTAAGTTTATTCTTATCAATATAGGAGCATAGAATTCCTGTAACAATAGCAATACCCCAAATACCTAATGTAGTTCCAGCAAGCAAGCTAAAAAGTAAAGCAACGACACATGCAGCTCCCGGAGACGGTCACAGCTTGTCTGTGAGCGGATGCCGGGAGCTGACAAGCCCGTCAGGGCGCGTCAGCAGGTTTTAGCGGGTGTCGGGGCGCAGCCCTGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTAACCATGCGGCATCAGTGCGGATTGTATGAAAAGTACGCCATGCCGGGTGTGAAATGCCGCACAGATGCGTAAGGAGAAAATGCACGTCCAGGCGCTTTTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGTACTGACTCACACAAAAACGGTAACACAGTTATCCACAGAATCAGGGGATAAGGCCGGAAAGAACATGTGAGCAAAAGACCAGGAACAGGAAGAAGGCCACGTAGCAGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATAGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTTGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGGCACGCCTTAACGCCACTGGCAGCAGCCACTGGTAACCGGATTAGCAGAGCGATGATGGCACAAACGGTGCTACAGAGTTCTTGAAGTAGTGGCCCGACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGTTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTAATCTTTTCTACTGAACCGCGATCCCCGTCAGTTTAGAAGAGGAGGATGGTGCGATGGTCCCTCCCTGAACATCACGTATATAGTTAGCCTGACATCCAACAAGGAGGTTTATCGCGAATATTCCCACAAAAAATCTTTTCCTCATAACTCGATCCTTATAAAATGAAAAGAATATATGGCGAGGTTTAATTT

AT-rich region

The information of repeat sequences

Motif CCAGGCGBTTTHYC

Start	P-value		Site
368	9.88e-09	AAATGCACGT	CCAGGCGCTTTTCC	GCTTCCTCGC
538	7.75e-08	AGGCCACGTA	GCAGGCGTTTTTCC	ATAGGCTCCG
634	1.66e-07	TATAAAGATA	CCAGGCGTTTCCCC	CTGGAAGCTC
727	5.90e-07	CTTCGGGAAG	CGTGGCGCTTTCTC	ATAGCTCACG
1249	1.55e-06	TGACATCCAA	CAAGGAGGTTTATC	GCGAATATTC

Motif GTTGGTAKCT

Start	P-value		Site
753	6.33e-07	AGCTCACGCT	GTTGGTATCT	CAGTTCGGTG
1042	1.33e-06	CGGAAAAAGA	GTTGGTAGCT	CTTGATCCGG
997	1.91e-06	AAGGACAGTA	TTTGGTATCT	GCGCTCTGCT
1075	3.99e-06	ACAAACCACC	GTTGGTAGCG	GTGGTTTTTT

Motif TTTWWTSTTWKCWA

Start	P-value		Site
30	1.42e-08	TAGTATTAAG	TTTATTCTTATCAA	TATAGGAGCA
1146	3.07e-08	AAGAAGATCC	TTTAATCTTTTCTA	CTGAACCGCG
1090	6.25e-08	TAGCGGTGGT	TTTTTTGTTTGCAA	GCAGCAGATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000306	100.0	1341	0	0	1	1341	1	1341	0.0	2477
pORI00000112	93.006	958	46	15	199	1152	1907	967	0.0	1387
pORI00000320	91.292	1022	67	16	144	1161	1103	100	0.0	1375
pORI00000312	91.292	1022	67	16	144	1161	1103	100	0.0	1375
pORI00000239	92.629	909	41	17	269	1160	78	977	0.0	1284
pORI00000022	89.229	1012	92	16	144	1148	1009	8	0.0	1249
pORI00000012	88.91	1037	81	29	131	1160	1064	55	0.0	1247
pORI00000058	88.674	1033	83	28	129	1156	1004	1	0.0	1229
pORI00000301	94.022	803	31	9	371	1160	946	148	0.0	1201
pORI00000294	94.022	803	31	9	371	1160	365	1163	0.0	1201
pORI00000292	94.022	803	31	9	371	1160	365	1163	0.0	1201
pORI00000290	94.022	803	31	9	371	1160	356	1154	0.0	1201
pORI00000343	87.535	1059	105	22	138	1189	4	1042	0.0	1199
pORI00000224	93.898	803	32	9	371	1160	946	148	0.0	1195
pORI00000223	93.898	803	32	9	371	1160	946	148	0.0	1195
pORI00000223	95.192	104	5	0	129	232	1591	1488	2.07995e-41	165
pORI00000222	93.898	803	32	9	371	1160	946	148	0.0	1195
pORI00000097	93.898	803	32	9	371	1160	946	148	0.0	1195
pORI00000097	95.192	104	5	0	129	232	2111	2008	2.07995e-41	165
pORI00000092	93.695	793	32	10	381	1160	935	148	0.0	1171
pORI00000092	95.192	104	5	0	129	232	1975	1872	2.07995e-41	165
pORI00000315	93.503	785	43	8	132	912	1749	969	0.0	1160
pORI00000309	93.598	781	42	8	131	908	1046	271	0.0	1158
pORI00000308	93.293	656	35	9	256	908	920	271	0.0	959
pORI00000111	84.051	790	94	28	144	928	1013	251	0.0	734
pORI00000240	91.061	358	16	13	134	490	1392	1050	0.0	470
pORI00000240	92.857	42	3	0	543	584	1043	1002	2.81e-10	62
pORI00000008	81.383	564	77	22	606	1156	1103	1651	0.0	435
pORI00000094	76.877	826	122	49	211	1029	939	1702	0.0	403
pORI00000093	76.877	826	122	49	211	1029	23	786	0.0	403
pORI00000086	82.979	376	45	16	543	918	397	753	0.0	322
pORI00000043	82.552	384	50	14	527	910	714	348	0.0	322
pORI00000198	79.472	492	65	25	541	1030	666	209	0.0	316
pORI00000244	82.88	368	45	13	543	910	797	448	0.0	315
pORI00000056	82.88	368	46	14	543	910	558	208	0.0	315
pORI00000110	81.633	392	54	15	527	918	2745	2372	0.0	309
pORI00000061	82.609	368	45	14	543	910	720	372	0.0	307
pORI00000060	76.423	615	98	32	540	1148	1756	2329	0.0	289
pORI00000060	95.425	153	7	0	129	281	1378	1530	0.0	244
pORI00000307	79.275	386	58	19	527	910	872	507	0.0	250
pORI00000116	79.275	386	58	19	527	910	872	507	0.0	250
pORI00000098	79.275	386	58	19	527	910	872	507	0.0	250
pORI00000095	79.275	386	58	19	527	910	872	507	0.0	250
pORI00000238	96.0	150	6	0	132	281	1206	1057	0.0	244
pORI00000069	76.383	470	80	22	543	1002	3680	3232	0.0	224
pORI00000284	84.354	147	11	5	543	678	204	349	5.87e-32	134
pORI00000234	84.354	147	11	5	543	678	204	349	5.87e-32	134
pORI00000210	84.354	147	11	5	543	678	204	349	5.87e-32	134
pORI00000209	84.354	147	11	5	543	678	204	349	5.87e-32	134
pORI00000181	98.333	60	1	0	221	280	725	784	1.28e-23	106
pORI00000914	98.214	56	1	0	378	433	709	654	2.14e-21	99
pORI00000595	98.214	56	1	0	378	433	709	654	2.14e-21	99
pORI00000478	98.214	56	1	0	378	433	353	298	2.14e-21	99
pORI00000990	95.082	61	3	0	374	434	678	618	7.7e-21	97
pORI00000124	95.161	62	1	1	221	280	844	783	7.7e-21	97
pORI00000011	95.0	60	2	1	221	280	842	784	9.96e-20	94