RefSeq NC_004936
DoriC accession number pORI00000198
OriC length 838 nt
OriC AT content 0.4893
The location of oriC region 3713..4550 nt
Browse in NCBI
OriC map
OriC sequences
AAATACTATTTCTTTTGTCGACTATAGTCTACATTCTAAACATCTAAGGCTTTTTTTTCAATCTTTTAATTACGTGATAGATAAGTTCCGTGGTTGGATCTTCTTGAGATCCTGACCAGTGAGATGTAACCTCTTGCTCTGTAAACGAAAAAACCGCCTTGCAGGGCGGTTTGATCGAAGGTTAAGCCAGCTTGCAGGCTGCTTAACCAGGTAACTGTCTTGTGCGAGACGAGTCACCAAAACTGTCCTTTCAGTGTAGCCGTAGTCAGGCCACCACTTCAAGTACTCTCTAAATCTCTCGCACAATCGACTTTTACCAGTGGCTGCTGCCAGTGGCGCTTTGTCGTGTCTTTCCGGGTTGGACTCAAGATGATAGTTACCGGATAAGGCGCAGCGGTCGGACGGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTTCCCGGAACCGAGTGTCAGGCGTGGAATGAGATAAACGCGGCCGATAACAGCGGAGTGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCTACCAGGGGGAAACGCCTGGGATCTTTATAGTCCTGTCGGGTTTCGCCACCACTGATTTGAGCGTCAGATTTTGTGATGCTTGTCAGGGGGGCGGACGTATTAGAAAAACGCCCCGGCAAGGCGTGGCCTTATCGTTCTGGCCCTGGCTTTTCGTTACTATGTCCGTCTATGTCACTTTTTACGTAGACAGCTGCGTCCGCTCGCCGCAGATAAGTGACCGAGCATAGCGAGCGAACGGTCGAGGAAGCGGAAAAGAACTGGAGATCACTTGGAGCACTGACGCT
AAATACTATTTCTTTTGTCGACTATAGTCTACATTCTAAACATCTAAGGCTTTTTTTTCAATCTTTTAATTACGTGATAGATAAGTTCCGTGGTTGGATCTTCTTGAGATCCTGACCAGTGAGATGTAACCTCTTGCTCTGTAAACGAAAAAACCGCCTTGCAGGGCGGTTTGATCGAAGGTTAAGCCAGCTTGCAGGCTGCTTAACCAGGTAACTGTCTTGTGCGAGACGAGTCACCAAAACTGTCCTTTCAGTGTAGCCGTAGTCAGGCCACCACTTCAAGTACTCTCTAAATCTCTCGCACAATCGACTTTTACCAGTGGCTGCTGCCAGTGGCGCTTTGTCGTGTCTTTCCGGGTTGGACTCAAGATGATAGTTACCGGATAAGGCGCAGCGGTCGGACGGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTTCCCGGAACCGAGTGTCAGGCGTGGAATGAGATAAACGCGGCCGATAACAGCGGAGTGACACCGGTAAACCGAAAGGCAGGAACAGGAGAGCGCACGAGGGAGCTACCAGGGGGAAACGCCTGGGATCTTTATAGTCCTGTCGGGTTTCGCCACCACTGATTTGAGCGTCAGATTTTGTGATGCTTGTCAGGGGGGCGGACGTATTAGAAAAACGCCCCGGCAAGGCGTGGCCTTATCGTTCTGGCCCTGGCTTTTCGTTACTATGTCCGTCTATGTCACTTTTTACGTAGACAGCTGCGTCCGCTCGCCGCAGATAAGTGACCGAGCATAGCGAGCGAACGGTCGAGGAAGCGGAAAAGAACTGGAGATCACTTGGAGCACTGACGCT
AT-rich region
The information of repeat sequences

Motif AAAAVYGNCCBDKCANDGCG

StartP-valueSite
1496.61e-10CTGTAAACGAAAAAACCGCCTTGCAGGGCGGTTTGATCGA
6585.70e-09GACGTATTAGAAAAACGCCCCGGCAAGGCGTGGCCTTATC
7641.27e-08CTCGCCGCAGATAAGTGACCGAGCATAGCGAGCGAACGGT
4832.28e-08GGAATGAGATAAACGCGGCCGATAACAGCGGAGTGACACC
2398.84e-08ACGAGTCACCAAAACTGTCCTTTCAGTGTAGCCGTAGTCA

Motif CCACCACT

StartP-valueSite
6001.02e-05TCGGGTTTCGCCACCACTGATTTGAGCG
2711.02e-05CGTAGTCAGGCCACCACTTCAAGTACTC

Motif TACWYTCTAAAYMTCT

StartP-valueSite
301.11e-09GACTATAGTCTACATTCTAAACATCTAAGGCTTTTT
2842.01e-09CCACTTCAAGTACTCTCTAAATCTCTCGCACAATCG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000198 100.0 838 0 0 1 838 1 838 0.0 1548
pORI00000094 88.927 578 46 15 96 664 1816 1248 0.0 697
pORI00000093 88.927 578 46 15 96 664 900 332 0.0 697
pORI00000060 89.687 543 47 8 126 664 2296 1759 0.0 684
pORI00000238 88.328 574 55 11 96 664 262 828 0.0 678
pORI00000244 86.957 575 48 22 97 664 243 797 0.0 621
pORI00000110 87.363 546 45 21 126 664 2201 2729 0.0 604
pORI00000111 86.949 544 53 16 137 671 92 626 0.0 595
pORI00000056 85.615 577 55 23 96 664 2 558 0.0 580
pORI00000043 86.381 536 44 25 139 664 182 698 0.0 558
pORI00000061 85.714 546 52 21 126 664 194 720 0.0 553
pORI00000086 88.793 464 31 17 206 664 844 397 0.0 549
pORI00000307 84.456 579 57 28 96 664 301 856 0.0 540
pORI00000116 84.456 579 57 28 96 664 301 856 0.0 540
pORI00000098 84.456 579 57 28 96 664 301 856 0.0 540
pORI00000095 84.456 579 57 28 96 664 301 856 0.0 540
pORI00000069 84.545 550 56 21 139 664 3136 3680 0.0 518
pORI00000314 81.947 493 70 15 126 608 56 539 0.0 399
pORI00000075 81.947 493 70 15 126 608 56 539 0.0 399
pORI00000320 82.609 483 52 25 209 666 232 707 0.0 398
pORI00000312 82.609 483 52 25 209 666 232 707 0.0 398
pORI00000240 88.923 325 29 6 126 449 452 770 0.0 394
pORI00000058 79.195 596 86 29 96 666 12 594 0.0 379
pORI00000112 81.328 482 60 24 209 666 1090 1565 0.0 366
pORI00000315 79.464 560 67 36 132 666 804 1340 0.0 353
pORI00000022 79.298 570 68 36 139 666 52 613 0.0 353
pORI00000301 80.769 494 53 30 209 666 278 765 0.0 348
pORI00000294 80.769 494 53 30 209 666 1033 546 0.0 348
pORI00000292 80.769 494 53 30 209 666 1033 546 0.0 348
pORI00000290 80.769 494 53 30 209 666 1024 537 0.0 348
pORI00000239 80.769 494 53 30 209 666 847 360 0.0 348
pORI00000224 80.567 494 54 30 209 666 278 765 0.0 342
pORI00000223 80.567 494 54 30 209 666 278 765 0.0 342
pORI00000222 80.567 494 54 30 209 666 278 765 0.0 342
pORI00000097 80.567 494 54 30 209 666 278 765 0.0 342
pORI00000092 80.567 494 54 30 209 666 278 765 0.0 342
pORI00000012 78.929 560 75 34 138 666 109 656 0.0 340
pORI00000309 80.127 473 58 26 236 684 191 651 0.0 320
pORI00000306 79.472 492 65 25 209 666 1030 541 0.0 316
pORI00000308 79.915 473 59 26 236 684 191 651 0.0 315
pORI00000284 82.812 192 18 9 485 664 392 204 2.15e-39 158
pORI00000234 82.812 192 18 9 485 664 392 204 2.15e-39 158
pORI00000210 82.812 192 18 9 485 664 392 204 2.15e-39 158
pORI00000209 82.812 192 18 9 485 664 392 204 2.15e-39 158