RefSeq NC_015968.1
Accession number NC_015968.1
DoriC accession number ORI95020123
OriC length 374 nt
OriC AT content 0.550802
The location of oriC region 4766429..4766802 nt
Browse in NCBI
OriC map
OriC sequences
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
miocAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgida
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
mioCAGATCGCGCGAACAGATGTGGATAACTCTGGTTAAAAGCTCGTATTAAGCCGTAGTTATCCCAATAACAACTCGCGTCCCGTTTTTGGCCTGTGCATAAAGTCGCGATCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACTGCATGATCTTCTTTGTGAGATCGGACTTACCCACAGGGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAAAAGATCTTCTTTTTAATAGCCCAGGATCCCAATGCTTTCTCGAAAGACTAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCTTTACGCGAGGCAGACCACCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AYRGYCCRGGMT

StartP-valueSite
1241.80e-07CCCAGCTTATACGGTCCAGGATCACCGATCAT
3232.03e-07AGTAGAATCCACGGCCCGGGCTTCAATCCATT
2727.09e-07CTTCTTTTTAATAGCCCAGGATCCCAATGCTT

Motif AAVAGATC

StartP-valueSite
2392.35e-05ATCACAATAGAACAGATCTCTAAATAAA
2555.04e-05TCTCTAAATAAAAAGATCTTCTTTTTAA
2246.85e-05CGATCCTAATAAGAGATCACAATAGAAC
118.66e-05AGATCGCGCGAACAGATGTGGATAACTC
1531.51e-04CATTCACAGCAAACGATCCTTTCTAACT

Motif ARVTCGCG

StartP-valueSite
991.07e-05CCTGTGCATAAAGTCGCGATCTGATCCC
693.16e-05TCCCAATAACAACTCGCGTCCCGTTTTT
16.74e-05.AGATCGCGCGAACAGATG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI95020123 100.0 374 0 0 1 374 1 374 0.0 691
ORI96000429 94.667 375 18 2 1 374 1 374 0.0 580
ORI96000432 93.883 376 19 4 1 374 1 374 0.0 564
ORI93020120 93.899 377 17 5 1 374 1 374 0.0 564
ORI95020126 93.6 375 22 2 1 374 1 374 0.0 558
ORI90020046 86.216 370 42 8 3 368 3 367 0.0 392
ORI96000434 84.53 362 46 9 17 374 26 381 0.0 350
ORI95020130 84.53 362 46 9 17 374 356 1 0.0 350
ORI93020089 84.53 362 46 9 17 374 356 1 0.0 350
ORI92020049 84.53 362 46 9 17 374 356 1 0.0 350
ORI96000393 84.254 362 47 9 17 374 356 1 0.0 344
ORI93030277 83.243 370 55 7 1 367 7 372 0.0 333
ORI94030400 82.385 369 60 5 1 367 372 7 0.0 316
ORI94030388 82.778 360 57 5 17 374 357 1 0.0 316
ORI96000401 82.058 379 56 12 1 374 372 1 0.0 313
ORI94030303 82.058 379 56 12 1 374 372 1 0.0 313
ORI10030083 81.963 377 60 8 1 374 7 378 0.0 313
ORI96000399 82.21 371 57 9 1 367 372 7 0.0 311
ORI93020111 82.597 362 53 9 17 374 26 381 0.0 311
ORI92520072 82.597 362 53 9 17 374 26 381 0.0 311
ORI92520068 82.21 371 57 9 1 367 372 7 0.0 311
ORI92520065 82.21 371 57 9 1 367 372 7 0.0 311
ORI92520067 82.817 355 52 9 17 367 356 7 0.0 309
ORI10020021 82.817 355 52 9 17 367 356 7 0.0 309
ORI96000414 81.746 378 59 10 1 374 372 1 0.0 307
ORI96000408 81.698 377 61 8 1 374 372 1 0.0 307
ORI96000405 81.698 377 61 8 1 374 372 1 0.0 307
ORI96000400 81.698 377 61 8 1 374 7 378 0.0 307
ORI93020113 81.746 378 59 10 1 374 372 1 0.0 307
ORI96000368 81.698 377 61 8 1 374 372 1 0.0 307
ORI93020090 81.698 377 61 8 1 374 372 1 0.0 307
ORI92720080 81.746 378 59 10 1 374 372 1 0.0 307
ORI92330196 81.698 377 61 8 1 374 372 1 0.0 307
ORI96000364 81.698 377 61 8 1 374 7 378 0.0 307
ORI10020002 81.698 377 61 8 1 374 372 1 0.0 307
ORI10020001 81.698 377 61 8 1 374 7 378 0.0 307
ORI95030469 81.941 371 58 9 1 367 372 7 0.0 305
ORI95030444 81.941 371 58 9 1 367 372 7 0.0 305
ORI95020132 81.941 371 58 9 1 367 372 7 0.0 305
ORI95030443 81.941 371 58 9 1 367 372 7 0.0 305
ORI95030442 81.941 371 58 9 1 367 372 7 0.0 305
ORI95020131 81.941 371 58 9 1 367 372 7 0.0 305
ORI95020129 81.941 371 58 9 1 367 7 372 0.0 305
ORI95030441 81.941 371 58 9 1 367 25 390 0.0 305
ORI95030436 81.941 371 58 9 1 367 372 7 0.0 305
ORI92720083 81.941 371 58 9 1 367 372 7 0.0 305
ORI92520073 81.941 371 58 9 1 367 372 7 0.0 305
ORI92520066 81.941 371 58 9 1 367 372 7 0.0 305
ORI92520064 81.941 371 58 9 1 367 372 7 0.0 305
ORI92230183 81.941 371 58 9 1 367 372 7 0.0 305
ORI10020015 81.941 371 58 9 1 367 7 372 0.0 305
ORI10020010 81.941 371 58 9 1 367 7 372 0.0 305
ORI10020009 81.941 371 58 9 1 367 372 7 0.0 305
ORI96000422 81.481 378 60 10 1 374 372 1 0.0 302
ORI96000411 81.432 377 62 8 1 374 372 1 0.0 302
ORI96000410 81.432 377 62 8 1 374 372 1 0.0 302
ORI96000406 81.432 377 62 8 1 374 372 1 0.0 302
ORI96000404 81.432 377 62 8 1 374 372 1 0.0 302
ORI96000402 81.432 377 62 8 1 374 372 1 0.0 302
ORI96000390 81.481 378 60 10 1 374 372 1 0.0 302
ORI93020099 81.481 378 60 10 1 374 372 1 0.0 302
ORI96000365 81.432 377 62 8 1 374 372 1 0.0 302
ORI94030302 81.432 377 62 8 1 374 372 1 0.0 302
ORI94030299 81.432 377 62 8 1 374 372 1 0.0 302
ORI92720076 81.481 378 60 10 1 374 372 1 0.0 302
ORI92320059 81.432 377 62 8 1 374 372 1 0.0 302
ORI50020036 81.432 377 62 8 1 374 372 1 0.0 302
ORI30020033 81.432 377 62 8 1 374 372 1 0.0 302
ORI10020028 81.432 377 62 8 1 374 372 1 0.0 302
ORI10030036 81.481 378 60 10 1 374 7 378 0.0 302
ORI10030030 81.481 378 60 10 1 374 372 1 0.0 302
ORI10020005 81.481 378 60 10 1 374 372 1 0.0 302
ORI10020004 81.481 378 60 10 1 374 372 1 0.0 302
ORI93020104 81.383 376 63 7 1 374 371 1 0.0 300
ORI92520071 81.671 371 59 9 1 367 7 372 0.0 300
ORI30020034 82.044 362 55 10 17 374 437 82 0.0 300
ORI10020023 81.671 371 59 9 1 367 372 7 0.0 300
ORI96000438 81.167 377 63 8 1 374 7 378 0.0 296
ORI96000437 81.167 377 63 8 1 374 7 378 0.0 296
ORI96000436 81.167 377 63 8 1 374 7 378 0.0 296
ORI96000416 81.167 377 63 8 1 374 372 1 0.0 296
ORI96000413 81.167 377 63 8 1 374 372 1 0.0 296
ORI96000412 81.167 377 63 8 1 374 372 1 0.0 296
ORI96000409 81.167 377 63 8 1 374 372 1 0.0 296
ORI96000403 81.167 377 63 8 1 374 372 1 0.0 296
ORI93020102 81.167 377 63 8 1 374 7 378 0.0 296
ORI96000367 81.167 377 63 8 1 374 372 1 0.0 296
ORI93020098 81.167 377 63 8 1 374 372 1 0.0 296
ORI93020096 81.167 377 63 8 1 374 7 378 0.0 296
ORI93020093 81.167 377 63 8 1 374 372 1 0.0 296
ORI94030301 81.167 377 63 8 1 374 372 1 0.0 296
ORI94030298 81.167 377 63 8 1 374 372 1 0.0 296
ORI92720078 81.167 377 63 8 1 374 372 1 0.0 296
ORI92330207 81.167 377 63 8 1 374 7 378 0.0 296
ORI92320058 81.167 377 63 8 1 374 7 378 0.0 296
ORI92220053 81.167 377 63 8 1 374 372 1 0.0 296
ORI10030070 81.167 377 63 8 1 374 7 378 0.0 296
ORI10020012 81.167 377 63 8 1 374 372 1 0.0 296
ORI93020103 81.117 376 64 7 1 374 7 377 0.0 294
ORI92520070 81.402 371 60 9 1 367 372 7 0.0 294
ORI96000417 80.902 377 64 8 1 374 372 1 0.0 291
ORI96000415 80.902 377 64 8 1 374 372 1 0.0 291
ORI96000407 80.902 377 64 8 1 374 372 1 0.0 291
ORI95030447 80.902 377 64 8 1 374 7 378 0.0 291
ORI94030300 80.902 377 64 8 1 374 372 1 0.0 291
ORI92720079 80.902 377 64 8 1 374 372 1 0.0 291
ORI92220052 80.902 377 64 8 1 374 372 1 0.0 291
ORI92230170 80.759 369 66 5 1 367 372 7 0.0 283
ORI10030084 81.163 361 60 8 17 374 23 378 0.0 283
ORI94030323 80.475 379 63 10 1 373 10 383 0.0 279
ORI92230179 80.811 370 59 11 3 367 9 371 0.0 279
ORI96000423 79.503 322 53 12 17 332 17 331 0.0 217
ORI80020043 76.205 332 58 18 1 322 371 51 4.34e-39 156
ORI94030361 79.253 241 35 12 89 322 283 51 1.56e-38 154
ORI96020517 80.952 189 25 9 89 273 98 279 4.37e-34 139