RefSeq NC_017652.1
Accession number NC_017652.1
DoriC accession number ORI96000413
OriC length 378 nt
OriC AT content 0.571429
The location of oriC region 4248599..4248976 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAATCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GAAHRATCKGKGWTC

StartP-valueSite
2267.96e-09CATTAACTGTGAATGATCGGTGATCCTGGACCGTA
791.56e-07GTCGGCTTGAGAAAGACCTGGGATCCTAGGTATTA
2944.53e-07CTCAAAAACTGAACAATCGTTGTTCTTTGGATAAC
2486.79e-07ATCCTGGACCGTATAAGCTGGGATCAGAATGAGGG
3641.24e-06ACAGTAGATCGCACGATCTGTATAC

Motif ARGATC

StartP-valueSite
2112.50e-04CAACCTGGAAAGGATCATTAACTGTG
1792.50e-04GTGGATAACAAGGATCCGGCTTTTAA
1532.50e-04ATCTCTTATTAGGATCGCACTGCCCT
1935.58e-04TCCGGCTTTTAAGATCAACAACCTGG
1095.58e-04TATTAAAAAGAAGATCTATTTATTTA

Motif GCCCKG

StartP-valueSite
419.52e-05ATGGATTGAAGCCCGGGCCGTGGATT
1642.11e-04GGATCGCACTGCCCTGTGGATAACAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000413 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000412 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000403 100.0 378 0 0 1 378 1 378 0.0 699
ORI10020012 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000410 99.735 378 1 0 1 378 1 378 0.0 693
ORI30020033 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000406 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000368 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000365 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000438 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000437 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000436 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000416 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000414 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000411 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000409 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000408 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000405 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000404 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000402 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000400 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020113 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020102 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000367 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020098 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020096 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020093 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020090 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030302 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030301 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030299 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030298 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720080 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720078 98.942 378 4 0 1 378 1 378 0.0 676
ORI92330207 98.942 378 4 0 1 378 378 1 0.0 676
ORI92320059 98.942 378 4 0 1 378 1 378 0.0 676
ORI92330196 98.942 378 4 0 1 378 1 378 0.0 676
ORI92320058 98.942 378 4 0 1 378 378 1 0.0 676
ORI92220053 98.942 378 4 0 1 378 1 378 0.0 676
ORI50020036 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020028 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000364 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020002 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020001 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000422 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000417 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000415 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000407 98.677 378 5 0 1 378 1 378 0.0 671
ORI95030447 98.677 378 5 0 1 378 378 1 0.0 671
ORI93020099 98.677 378 5 0 1 378 1 378 0.0 671
ORI92720076 98.677 378 5 0 1 378 1 378 0.0 671
ORI92220052 98.677 378 5 0 1 378 1 378 0.0 671
ORI10030083 98.677 378 5 0 1 378 378 1 0.0 671
ORI10030070 98.677 378 5 0 1 378 378 1 0.0 671
ORI10020005 98.677 378 5 0 1 378 1 378 0.0 671
ORI10020004 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020104 98.677 378 4 1 1 378 1 377 0.0 669
ORI92720079 98.413 378 6 0 1 378 1 378 0.0 665
ORI93020103 98.413 378 5 1 1 378 377 1 0.0 664
ORI96000401 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000390 98.148 378 7 0 1 378 1 378 0.0 660
ORI94030303 98.148 378 7 0 1 378 1 378 0.0 660
ORI94030300 98.148 378 7 0 1 378 1 378 0.0 660
ORI10030084 98.148 378 7 0 1 378 378 1 0.0 660
ORI10030036 98.148 378 7 0 1 378 378 1 0.0 660
ORI10030030 98.148 378 7 0 1 378 1 378 0.0 660
ORI30020034 97.884 378 8 0 1 378 82 459 0.0 654
ORI93030277 89.211 380 37 4 1 378 378 1 0.0 472
ORI96000399 86.29 372 51 0 1 372 1 372 0.0 405
ORI92520066 86.29 372 51 0 1 372 1 372 0.0 405
ORI92520065 86.29 372 51 0 1 372 1 372 0.0 405
ORI94030323 86.207 377 44 8 7 378 377 4 0.0 401
ORI95020129 85.752 379 52 2 1 378 378 1 0.0 399
ORI94030400 86.059 373 50 2 1 372 1 372 0.0 399
ORI92520068 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020015 85.752 379 52 2 1 378 378 1 0.0 399
ORI10020010 85.752 379 52 2 1 378 378 1 0.0 399
ORI95030469 85.753 372 53 0 1 372 1 372 0.0 394
ORI95030444 85.753 372 53 0 1 372 1 372 0.0 394
ORI95020132 85.753 372 53 0 1 372 1 372 0.0 394
ORI95030443 85.753 372 53 0 1 372 1 372 0.0 394
ORI95030442 85.753 372 53 0 1 372 1 372 0.0 394
ORI95020131 85.753 372 53 0 1 372 1 372 0.0 394
ORI95030441 85.45 378 55 0 1 378 396 19 0.0 394
ORI95030436 85.753 372 53 0 1 372 1 372 0.0 394
ORI92720083 85.753 372 53 0 1 372 1 372 0.0 394
ORI92520073 85.753 372 53 0 1 372 1 372 0.0 394
ORI92520067 85.753 372 53 0 1 372 1 372 0.0 394
ORI92520064 85.753 372 53 0 1 372 1 372 0.0 394
ORI10020021 85.753 372 53 0 1 372 1 372 0.0 394
ORI10020009 85.753 372 53 0 1 372 1 372 0.0 394
ORI92520071 85.185 378 56 0 1 378 378 1 0.0 388
ORI92230183 85.484 372 54 0 1 372 1 372 0.0 388
ORI10020023 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000434 85.34 382 42 11 1 375 381 7 0.0 383
ORI95020130 85.488 379 41 11 1 372 1 372 0.0 383
ORI93020089 85.488 379 41 11 1 372 1 372 0.0 383
ORI92520070 85.215 372 55 0 1 372 1 372 0.0 383
ORI92020049 85.488 379 41 11 1 372 1 372 0.0 383
ORI96000393 85.224 379 42 12 1 372 1 372 0.0 377
ORI92230179 85.294 374 46 8 1 370 377 9 0.0 377
ORI92520072 84.777 381 46 11 1 375 381 7 0.0 372
ORI94030388 85.326 368 41 13 1 361 1 362 0.0 368
ORI93020111 84.514 381 47 11 1 375 381 7 0.0 366
ORI96000432 83.377 379 51 12 1 372 374 1 0.0 340
ORI95020123 81.167 377 63 8 1 372 374 1 0.0 296
ORI93020120 81.217 378 61 9 1 372 374 1 0.0 296
ORI96000429 80.475 379 62 11 1 372 374 1 0.0 279
ORI95020126 80.423 378 64 10 1 372 374 1 0.0 279
ORI96000423 80.822 292 50 5 42 330 331 43 0.0 224
ORI93020094 76.856 229 43 9 97 321 280 58 1.6e-28 121