RefSeq NC_017638.1
Accession number NC_017638.1
DoriC accession number ORI96000408
OriC length 378 nt
OriC AT content 0.566138
The location of oriC region 3904740..3905117 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACAGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CCTGGR

StartP-valueSite
931.43e-04GACCTGGGATCCTGGGTATTAAAAAG
851.43e-04TTGAGAAAGACCTGGGATCCTGGGTA
2403.17e-04GATCGGTGATCCTGGACCGTATAAGC
2043.17e-04AGATCAACAACCTGGAAAGGATCATT
424.19e-04TGGATTGAAGCCCGGGCCGTGGATTC

Motif CTGTGGAT

StartP-valueSite
1671.62e-05TCGCACTGCCCTGTGGATAACAAGGATC
482.76e-05GAAGCCCGGGCCGTGGATTCTACTCAAC
3089.87e-05AACAGTTGTTCTTTGGATAACTACCGGT
2229.87e-05GGATCATTAACTGTGAATGATCGGTGAT
3221.88e-04GGATAACTACCGGTTGATCCAAGCTTCC

Motif ARGATC

StartP-valueSite
2112.55e-04CAACCTGGAAAGGATCATTAACTGTG
1792.55e-04GTGGATAACAAGGATCCGGCTTTTAA
1532.55e-04ATCTCTTATTAGGATCGCACTGCCCT
1935.64e-04TCCGGCTTTTAAGATCAACAACCTGG
1095.64e-04TATTAAAAAGAAGATCTATTTATTTA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000408 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000405 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000400 100.0 378 0 0 1 378 378 1 0.0 699
ORI93020090 100.0 378 0 0 1 378 1 378 0.0 699
ORI92330196 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000364 100.0 378 0 0 1 378 378 1 0.0 699
ORI10020002 100.0 378 0 0 1 378 1 378 0.0 699
ORI10020001 100.0 378 0 0 1 378 378 1 0.0 699
ORI96000414 99.735 378 1 0 1 378 1 378 0.0 693
ORI93020113 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000368 99.735 378 1 0 1 378 1 378 0.0 693
ORI92720080 99.735 378 1 0 1 378 1 378 0.0 693
ORI10030083 99.735 378 1 0 1 378 378 1 0.0 693
ORI96000438 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000437 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000436 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000422 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000416 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000411 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000409 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020102 99.471 378 2 0 1 378 378 1 0.0 688
ORI93020099 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000367 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020098 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020096 99.471 378 2 0 1 378 378 1 0.0 688
ORI93020093 99.471 378 2 0 1 378 1 378 0.0 688
ORI94030302 99.471 378 2 0 1 378 1 378 0.0 688
ORI94030301 99.471 378 2 0 1 378 1 378 0.0 688
ORI94030298 99.471 378 2 0 1 378 1 378 0.0 688
ORI92720078 99.471 378 2 0 1 378 1 378 0.0 688
ORI92720076 99.471 378 2 0 1 378 1 378 0.0 688
ORI92330207 99.471 378 2 0 1 378 378 1 0.0 688
ORI92320059 99.471 378 2 0 1 378 1 378 0.0 688
ORI92320058 99.471 378 2 0 1 378 378 1 0.0 688
ORI92220053 99.471 378 2 0 1 378 1 378 0.0 688
ORI10020005 99.471 378 2 0 1 378 1 378 0.0 688
ORI10020004 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000417 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000415 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000410 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000407 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000406 99.206 378 3 0 1 378 1 378 0.0 682
ORI95030447 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000365 99.206 378 3 0 1 378 1 378 0.0 682
ORI92220052 99.206 378 3 0 1 378 1 378 0.0 682
ORI30020033 99.206 378 3 0 1 378 1 378 0.0 682
ORI10030070 99.206 378 3 0 1 378 378 1 0.0 682
ORI93020104 99.206 378 2 1 1 378 1 377 0.0 680
ORI96000413 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000412 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000404 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000403 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000402 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000401 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000390 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030303 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030299 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720079 98.942 378 4 0 1 378 1 378 0.0 676
ORI50020036 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020028 98.942 378 4 0 1 378 1 378 0.0 676
ORI10030036 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020012 98.942 378 4 0 1 378 1 378 0.0 676
ORI10030030 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020103 98.942 378 3 1 1 378 377 1 0.0 675
ORI94030300 98.677 378 5 0 1 378 1 378 0.0 671
ORI30020034 98.677 378 5 0 1 378 82 459 0.0 671
ORI10030084 98.677 378 5 0 1 378 378 1 0.0 671
ORI93030277 90.0 380 34 4 1 378 378 1 0.0 488
ORI92230170 89.008 373 39 2 1 372 1 372 0.0 460
ORI96000399 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520066 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520065 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520068 86.828 372 49 0 1 372 1 372 0.0 416
ORI95030469 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030444 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020132 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030443 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030442 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020131 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020129 86.28 379 50 2 1 378 378 1 0.0 411
ORI95030441 86.243 378 52 0 1 378 396 19 0.0 411
ORI95030436 86.559 372 50 0 1 372 1 372 0.0 411
ORI94030400 86.595 373 48 2 1 372 1 372 0.0 411
ORI92720083 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520073 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520067 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520064 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020021 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020015 86.28 379 50 2 1 378 378 1 0.0 411
ORI10020010 86.28 379 50 2 1 378 378 1 0.0 411
ORI10020009 86.559 372 50 0 1 372 1 372 0.0 411
ORI94030323 86.472 377 43 8 7 378 377 4 0.0 407
ORI92520071 85.979 378 53 0 1 378 378 1 0.0 405
ORI92230183 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020023 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000434 86.126 382 39 11 1 375 381 7 0.0 399
ORI95020130 86.28 379 38 11 1 372 1 372 0.0 399
ORI93020089 86.28 379 38 11 1 372 1 372 0.0 399
ORI92520070 86.022 372 52 0 1 372 1 372 0.0 399
ORI92020049 86.28 379 38 11 1 372 1 372 0.0 399
ORI96000393 86.016 379 39 11 1 372 1 372 0.0 394
ORI92230179 86.096 374 43 8 1 370 377 9 0.0 394
ORI92520072 85.564 381 43 11 1 375 381 7 0.0 388
ORI94030388 86.141 368 38 13 1 361 1 362 0.0 385
ORI93020111 85.302 381 44 11 1 375 381 7 0.0 383
ORI96000432 84.433 379 47 12 1 372 374 1 0.0 363
ORI95020123 81.698 377 61 8 1 372 374 1 0.0 307
ORI93020120 81.481 378 60 9 1 372 374 1 0.0 302
ORI95020126 80.902 377 64 8 1 372 374 1 0.0 291
ORI96000429 80.688 378 63 10 1 372 374 1 0.0 285
ORI96000423 80.822 292 50 5 42 330 331 43 0.0 224
ORI93020094 76.955 243 45 10 89 326 289 53 9.56e-31 128