RefSeq NC_011283.1
Accession number NC_011283.1
DoriC accession number ORI92520072
OriC length 381 nt
OriC AT content 0.580052
The location of oriC region 5606607..5606987 nt
Browse in NCBI
OriC map
OriC sequences
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
miocGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgida
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAGCTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GBTTDTWVTNCTVWGGATMACCG

StartP-valueSite
895.38e-10ACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGA
606.84e-09TGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTT
1278.87e-09TTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACA
151.44e-08TGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAG
2721.68e-08TAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTC

Motif AAAGATC

StartP-valueSite
2639.38e-05ATCTCTATATAAAGATCTTCTTTTTAA
89.38e-05GAATTGTAAAGATCGTCGGATCTT
2341.54e-04GATCCTAATAAGAGATCACAATAGAAC
2492.28e-04TCACAATAGAACAGATCTCTATATAAA
3063.04e-04GTCTTTCTCAAAAGACCAAAGCCGAGT

Motif TBGATC

StartP-valueSite
1962.01e-04TCTTACATCGTGGATCCGACTTATCC
502.01e-04CTTAAAAGCTTGGATCAACCGGTAGT
1825.02e-04TCTTAAGCTTTTGATCTTACATCGTG
1185.02e-04ACCCTTCATTTTGATCCCAGCTTATA
2227.46e-04ACAAAGAGAGTCGATCCTAATAAGAG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92520072 100.0 381 0 0 1 381 1 381 0.0 704
ORI93020111 99.738 381 1 0 1 381 1 381 0.0 699
ORI96000434 96.325 381 14 0 1 381 1 381 0.0 627
ORI95020130 96.325 381 14 0 1 381 381 1 0.0 627
ORI93020089 96.325 381 14 0 1 381 381 1 0.0 627
ORI92020049 96.325 381 14 0 1 381 381 1 0.0 627
ORI96000393 96.063 381 15 0 1 381 381 1 0.0 621
ORI94030388 92.105 380 28 2 4 381 380 1 0.0 534
ORI94030323 86.494 385 45 6 1 380 1 383 0.0 416
ORI96000414 85.979 378 41 11 10 381 372 1 0.0 394
ORI96000401 85.979 378 41 11 10 381 372 1 0.0 394
ORI93020113 85.979 378 41 11 10 381 372 1 0.0 394
ORI94030303 85.979 378 41 11 10 381 372 1 0.0 394
ORI92720080 85.979 378 41 11 10 381 372 1 0.0 394
ORI10030083 85.864 382 40 13 7 381 4 378 0.0 394
ORI96000422 85.714 378 42 11 10 381 372 1 0.0 388
ORI96000408 85.714 378 42 11 10 381 372 1 0.0 388
ORI96000405 85.714 378 42 11 10 381 372 1 0.0 388
ORI96000400 85.564 381 43 11 7 381 4 378 0.0 388
ORI96000390 85.714 378 42 11 10 381 372 1 0.0 388
ORI93020099 85.714 378 42 11 10 381 372 1 0.0 388
ORI93020090 85.714 378 42 11 10 381 372 1 0.0 388
ORI92720076 85.714 378 42 11 10 381 372 1 0.0 388
ORI92330196 85.714 378 42 11 10 381 372 1 0.0 388
ORI92220052 85.714 378 42 11 10 381 372 1 0.0 388
ORI96000364 85.564 381 43 11 7 381 4 378 0.0 388
ORI10030036 85.564 381 43 11 7 381 4 378 0.0 388
ORI10030030 85.714 378 42 11 10 381 372 1 0.0 388
ORI10020005 85.714 378 42 11 10 381 372 1 0.0 388
ORI10020004 85.714 378 42 11 10 381 372 1 0.0 388
ORI10020002 85.714 378 42 11 10 381 372 1 0.0 388
ORI10020001 85.564 381 43 11 7 381 4 378 0.0 388
ORI93020104 85.714 378 41 11 10 381 371 1 0.0 387
ORI96000438 85.302 381 44 11 7 381 4 378 0.0 383
ORI96000437 85.302 381 44 11 7 381 4 378 0.0 383
ORI96000436 85.302 381 44 11 7 381 4 378 0.0 383
ORI96000416 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000411 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000409 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000406 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000368 85.45 378 43 11 10 381 372 1 0.0 383
ORI93020102 85.302 381 44 11 7 381 4 378 0.0 383
ORI96000367 85.45 378 43 11 10 381 372 1 0.0 383
ORI93020098 85.45 378 43 11 10 381 372 1 0.0 383
ORI93020096 85.302 381 44 11 7 381 4 378 0.0 383
ORI93020093 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000365 85.45 378 43 11 10 381 372 1 0.0 383
ORI94030302 85.45 378 43 11 10 381 372 1 0.0 383
ORI94030301 85.45 378 43 11 10 381 372 1 0.0 383
ORI94030298 85.45 378 43 11 10 381 372 1 0.0 383
ORI92720078 85.45 378 43 11 10 381 372 1 0.0 383
ORI92330207 85.302 381 44 11 7 381 4 378 0.0 383
ORI92320059 85.45 378 43 11 10 381 372 1 0.0 383
ORI92320058 85.302 381 44 11 7 381 4 378 0.0 383
ORI92220053 85.45 378 43 11 10 381 372 1 0.0 383
ORI30020034 85.45 378 43 11 10 381 453 82 0.0 383
ORI10030070 85.302 381 44 11 7 381 4 378 0.0 383
ORI93030277 85.0 380 51 5 5 381 2 378 0.0 381
ORI93020103 85.302 381 43 11 7 381 4 377 0.0 381
ORI96000417 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000415 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000410 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000407 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000404 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000402 85.185 378 44 11 10 381 372 1 0.0 377
ORI95030447 85.039 381 45 11 7 381 4 378 0.0 377
ORI94030299 85.185 378 44 11 10 381 372 1 0.0 377
ORI50020036 85.185 378 44 11 10 381 372 1 0.0 377
ORI30020033 85.185 378 44 11 10 381 372 1 0.0 377
ORI10020028 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000413 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000412 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000403 84.921 378 45 11 10 381 372 1 0.0 372
ORI92720079 84.921 378 45 11 10 381 372 1 0.0 372
ORI10020012 84.921 378 45 11 10 381 372 1 0.0 372
ORI94030300 84.656 378 46 11 10 381 372 1 0.0 366
ORI10030084 84.514 381 47 11 7 381 4 378 0.0 366
ORI95020129 83.246 382 54 9 5 381 2 378 0.0 342
ORI10020015 83.246 382 54 9 5 381 2 378 0.0 342
ORI10020010 83.246 382 54 9 5 381 2 378 0.0 342
ORI96000399 82.984 382 55 9 5 381 377 1 0.0 337
ORI92520065 82.984 382 55 9 5 381 377 1 0.0 337
ORI95030469 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030444 82.677 381 58 7 5 381 377 1 0.0 331
ORI95020132 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030443 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030442 82.677 381 58 7 5 381 377 1 0.0 331
ORI95020131 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030436 82.677 381 58 7 5 381 377 1 0.0 331
ORI92520068 82.723 382 56 9 5 381 377 1 0.0 331
ORI92520066 82.723 382 56 9 5 381 377 1 0.0 331
ORI10020009 82.677 381 58 7 5 381 377 1 0.0 331
ORI96000432 82.804 378 55 9 10 381 1 374 0.0 329
ORI95030441 82.292 384 60 7 2 381 17 396 0.0 326
ORI94030400 82.552 384 53 13 5 381 377 1 0.0 326
ORI92720083 82.415 381 59 7 5 381 377 1 0.0 326
ORI92520073 82.415 381 59 7 5 381 377 1 0.0 326
ORI92520067 82.461 382 57 9 5 381 377 1 0.0 326
ORI92520064 82.415 381 59 7 5 381 377 1 0.0 326
ORI92230183 82.461 382 57 9 5 381 377 1 0.0 326
ORI10020021 82.461 382 57 9 5 381 377 1 0.0 326
ORI92230179 82.415 381 58 8 5 381 2 377 0.0 324
ORI92520071 82.152 381 60 7 5 381 2 378 0.0 320
ORI10020023 82.152 381 60 7 5 381 377 1 0.0 320
ORI92520070 81.89 381 61 7 5 381 377 1 0.0 315
ORI96000429 82.597 362 53 9 26 381 17 374 0.0 311
ORI95020126 82.645 363 51 11 26 381 17 374 0.0 311
ORI95020123 82.597 362 53 9 26 381 17 374 0.0 311
ORI93020120 82.548 361 55 7 26 381 17 374 0.0 311
ORI96000423 79.257 323 56 9 23 339 14 331 0.0 215