RefSeq NC_016854.1
Accession number NC_016854.1
DoriC accession number ORI95020131
OriC length 378 nt
OriC AT content 0.558201
The location of oriC region 4106664..4107041 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidaGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioc
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGTCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACATmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GGATMACDMSVKGT

StartP-valueSite
3127.74e-08GTTATTCTTTGGATAACTACCGGTTGATCCAAGC
2121.44e-07GCGTTGGAAAGGATCACTAGCTGTGAATGATCGG
2581.05e-06GTATAAGCTGGGATCAAAACGGGTACTTATACAC
1541.95e-06TCTCTTATTAGGATCGCGCCAGGCTGTGGATAAC
131.95e-06TAATTGCCTCGCATAACGCGGTGTGAAAATGGAT

Motif CCCGGG

StartP-valueSite
851.15e-04TGGAGAAAGCCCCGGGATCCGGGCTA
421.15e-04TGGATTGAAGCCCGGGCGGTGGATTC
1772.51e-04CTGTGGATAACCCGGATCCTGTAATA
924.08e-04AGCCCCGGGATCCGGGCTATTAAAAA

Motif GATCTBT

StartP-valueSite
1276.91e-05TTTATTTAGAGATCTGTTCTATTGTGA
3681.48e-04TGGATCGCACGATCTTTACAT
1111.48e-04TTAAAAAGAAGATCTTTTTATTTAGAG
1422.06e-04GTTCTATTGTGATCTCTTATTAGGATC
2302.66e-04AGCTGTGAATGATCGGTGATCGTGGTC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI95030469 100.0 378 0 0 1 378 1 378 0.0 699
ORI95030444 100.0 378 0 0 1 378 1 378 0.0 699
ORI95030443 100.0 378 0 0 1 378 1 378 0.0 699
ORI95030442 100.0 378 0 0 1 378 1 378 0.0 699
ORI95020131 100.0 378 0 0 1 378 1 378 0.0 699
ORI95030436 100.0 378 0 0 1 378 1 378 0.0 699
ORI95020132 100.0 377 0 0 1 377 1 377 0.0 697
ORI10020009 100.0 377 0 0 1 377 1 377 0.0 697
ORI95030441 99.735 377 1 0 1 377 396 20 0.0 691
ORI92720083 99.735 377 1 0 1 377 1 377 0.0 691
ORI92520073 99.735 377 1 0 1 377 1 377 0.0 691
ORI92520064 99.735 377 1 0 1 377 1 377 0.0 691
ORI92520071 99.469 377 2 0 1 377 378 2 0.0 686
ORI92520068 99.469 377 2 0 1 377 1 377 0.0 686
ORI92230183 99.469 377 2 0 1 377 1 377 0.0 686
ORI10020023 99.469 377 2 0 1 377 1 377 0.0 686
ORI96000399 99.204 377 3 0 1 377 1 377 0.0 680
ORI92520070 99.204 377 3 0 1 377 1 377 0.0 680
ORI92520067 99.204 377 3 0 1 377 1 377 0.0 680
ORI92520066 99.204 377 3 0 1 377 1 377 0.0 680
ORI92520065 99.204 377 3 0 1 377 1 377 0.0 680
ORI10020021 99.204 377 3 0 1 377 1 377 0.0 680
ORI95020129 98.408 377 6 0 1 377 378 2 0.0 664
ORI10020015 98.408 377 6 0 1 377 378 2 0.0 664
ORI10020010 98.408 377 6 0 1 377 378 2 0.0 664
ORI94030400 93.899 377 23 0 1 377 1 377 0.0 569
ORI92230179 92.573 377 27 1 1 377 377 2 0.0 540
ORI93030277 91.799 378 29 2 1 377 378 2 0.0 525
ORI92230170 87.766 376 38 5 1 372 1 372 0.0 433
ORI96000401 87.366 372 47 0 1 372 1 372 0.0 427
ORI94030303 87.366 372 47 0 1 372 1 372 0.0 427
ORI96000414 86.828 372 49 0 1 372 1 372 0.0 416
ORI96000411 86.828 372 49 0 1 372 1 372 0.0 416
ORI93020113 86.828 372 49 0 1 372 1 372 0.0 416
ORI94030302 86.828 372 49 0 1 372 1 372 0.0 416
ORI92720080 86.828 372 49 0 1 372 1 372 0.0 416
ORI92320059 86.828 372 49 0 1 372 1 372 0.0 416
ORI96000422 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000408 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000406 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000405 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000400 86.4 375 51 0 1 375 378 4 0.0 411
ORI96000390 86.559 372 50 0 1 372 1 372 0.0 411
ORI93020099 86.559 372 50 0 1 372 1 372 0.0 411
ORI93020090 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000365 86.559 372 50 0 1 372 1 372 0.0 411
ORI92720076 86.559 372 50 0 1 372 1 372 0.0 411
ORI92330196 86.559 372 50 0 1 372 1 372 0.0 411
ORI92220052 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000364 86.4 375 51 0 1 375 378 4 0.0 411
ORI10030070 86.4 375 51 0 1 375 378 4 0.0 411
ORI10030036 86.4 375 51 0 1 375 378 4 0.0 411
ORI10030030 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020005 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020004 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020002 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020001 86.4 375 51 0 1 375 378 4 0.0 411
ORI96000438 86.133 375 52 0 1 375 378 4 0.0 405
ORI96000437 86.133 375 52 0 1 375 378 4 0.0 405
ORI96000436 86.133 375 52 0 1 375 378 4 0.0 405
ORI96000416 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000409 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000368 86.29 372 51 0 1 372 1 372 0.0 405
ORI93020102 86.133 375 52 0 1 375 378 4 0.0 405
ORI96000367 86.29 372 51 0 1 372 1 372 0.0 405
ORI93020098 86.29 372 51 0 1 372 1 372 0.0 405
ORI93020096 86.133 375 52 0 1 375 378 4 0.0 405
ORI93020093 86.29 372 51 0 1 372 1 372 0.0 405
ORI94030301 86.29 372 51 0 1 372 1 372 0.0 405
ORI94030298 86.29 372 51 0 1 372 1 372 0.0 405
ORI92720079 86.29 372 51 0 1 372 1 372 0.0 405
ORI92720078 86.29 372 51 0 1 372 1 372 0.0 405
ORI92330207 86.133 375 52 0 1 375 378 4 0.0 405
ORI92320058 86.133 375 52 0 1 375 378 4 0.0 405
ORI92220053 86.29 372 51 0 1 372 1 372 0.0 405
ORI30020034 86.29 372 51 0 1 372 82 453 0.0 405
ORI10030083 86.133 375 52 0 1 375 378 4 0.0 405
ORI93020104 86.29 372 50 1 1 372 1 371 0.0 403
ORI96000417 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000415 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000410 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000407 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000404 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000402 86.022 372 52 0 1 372 1 372 0.0 399
ORI95030447 85.867 375 53 0 1 375 378 4 0.0 399
ORI94030299 86.022 372 52 0 1 372 1 372 0.0 399
ORI50020036 86.022 372 52 0 1 372 1 372 0.0 399
ORI30020033 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020028 86.022 372 52 0 1 372 1 372 0.0 399
ORI93020103 85.904 376 50 3 1 375 377 4 0.0 398
ORI96000413 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000412 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000403 85.753 372 53 0 1 372 1 372 0.0 394
ORI10020012 85.753 372 53 0 1 372 1 372 0.0 394
ORI94030300 85.484 372 54 0 1 372 1 372 0.0 388
ORI10030084 85.333 375 55 0 1 375 378 4 0.0 388
ORI94030323 84.656 378 46 9 7 377 377 5 0.0 366
ORI96000432 84.409 372 47 11 7 372 367 1 0.0 355
ORI96000434 83.511 376 51 7 7 377 374 5 0.0 340
ORI96000393 83.554 377 49 9 7 377 8 377 0.0 340
ORI95020130 83.511 376 51 7 7 377 8 377 0.0 340
ORI93020089 83.511 376 51 7 7 377 8 377 0.0 340
ORI92020049 83.511 376 51 7 7 377 8 377 0.0 340
ORI94030388 83.033 389 44 18 1 377 1 379 0.0 333
ORI93020111 82.632 380 60 5 1 377 381 5 0.0 331
ORI92520072 82.632 380 60 5 1 377 381 5 0.0 331
ORI93020120 83.019 371 54 8 7 372 367 1 0.0 327
ORI95020126 82.258 372 55 11 7 372 367 1 0.0 311
ORI96000429 81.989 372 56 10 7 372 367 1 0.0 305
ORI95020123 81.941 371 58 9 7 372 367 1 0.0 305
ORI96000423 84.192 291 42 4 42 330 331 43 0.0 279
ORI94030317 77.778 243 44 9 89 326 90 327 1.23e-34 141