RefSeq NC_011205.1
Accession number NC_011205.1
DoriC accession number ORI92520070
OriC length 378 nt
OriC AT content 0.547619
The location of oriC region 4112344..4112721 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidaGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioc
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGAGCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACACAACTCAAAAAGTGAACAACGGTTATTCTTTGGGTAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif MCDRGCKGTKRAT

StartP-valueSite
433.15e-08GGATTGAAGCCCGGGCGGTGGATTCTACTCAAC
1621.67e-07TAGGATCGCGCCAGGCTGTGGATAACCCGGATC
2171.12e-06GGAAAGGAGCACTAGCTGTGAATGATCGGTGAT
3174.72e-06TCTTTGGGTAACTACCGGTTGATCCAAGCTTTC
936.39e-06GCCCCGGGATCCGGGCTATTAAAAAGAAGATCT

Motif GATCTBT

StartP-valueSite
3687.25e-05TGGATCGCACGATCTTTACAC
1117.25e-05TTAAAAAGAAGATCTTTTTATTTAGAG
1421.29e-04GTTCTATTGTGATCTCTTATTAGGATC
1271.95e-04TTTATTTAGAGATCTGTTCTATTGTGA

Motif GSCCCG

StartP-valueSite
831.11e-04GATGGAGAAAGCCCCGGGATCCGGGC
2432.43e-04CGGTGATCGTGGCCCGTATAAGCTGG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92520070 100.0 378 0 0 1 378 1 378 0.0 699
ORI95030441 99.471 378 2 0 1 378 396 19 0.0 688
ORI92720083 99.471 378 2 0 1 378 1 378 0.0 688
ORI92520073 99.471 378 2 0 1 378 1 378 0.0 688
ORI92520064 99.471 378 2 0 1 378 1 378 0.0 688
ORI95020132 99.206 378 3 0 1 378 1 378 0.0 682
ORI92520071 99.206 378 3 0 1 378 378 1 0.0 682
ORI92520068 99.206 378 3 0 1 378 1 378 0.0 682
ORI92230183 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020023 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020009 99.206 378 3 0 1 378 1 378 0.0 682
ORI95030469 99.204 377 3 0 1 377 1 377 0.0 680
ORI95030444 99.204 377 3 0 1 377 1 377 0.0 680
ORI95030443 99.204 377 3 0 1 377 1 377 0.0 680
ORI95030442 99.204 377 3 0 1 377 1 377 0.0 680
ORI95020131 99.204 377 3 0 1 377 1 377 0.0 680
ORI95030436 99.204 377 3 0 1 377 1 377 0.0 680
ORI96000399 98.942 378 4 0 1 378 1 378 0.0 676
ORI92520067 98.942 378 4 0 1 378 1 378 0.0 676
ORI92520066 98.942 378 4 0 1 378 1 378 0.0 676
ORI92520065 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020021 98.942 378 4 0 1 378 1 378 0.0 676
ORI95020129 98.148 378 7 0 1 378 378 1 0.0 660
ORI10020015 98.148 378 7 0 1 378 378 1 0.0 660
ORI10020010 98.148 378 7 0 1 378 378 1 0.0 660
ORI94030400 93.651 378 24 0 1 378 1 378 0.0 566
ORI92230179 92.328 378 28 1 1 378 377 1 0.0 536
ORI93030277 91.029 379 32 2 1 378 378 1 0.0 510
ORI92230170 87.5 376 39 5 1 372 1 372 0.0 427
ORI96000401 86.828 372 49 0 1 372 1 372 0.0 416
ORI94030303 86.828 372 49 0 1 372 1 372 0.0 416
ORI96000414 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000411 86.29 372 51 0 1 372 1 372 0.0 405
ORI93020113 86.29 372 51 0 1 372 1 372 0.0 405
ORI94030302 86.29 372 51 0 1 372 1 372 0.0 405
ORI92720080 86.29 372 51 0 1 372 1 372 0.0 405
ORI92320059 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000408 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000406 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000405 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000400 85.714 378 54 0 1 378 378 1 0.0 399
ORI96000390 86.022 372 52 0 1 372 1 372 0.0 399
ORI93020090 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000365 86.022 372 52 0 1 372 1 372 0.0 399
ORI92330196 86.022 372 52 0 1 372 1 372 0.0 399
ORI92220052 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000364 85.714 378 54 0 1 378 378 1 0.0 399
ORI10030070 85.714 378 54 0 1 378 378 1 0.0 399
ORI10030036 85.714 378 54 0 1 378 378 1 0.0 399
ORI10030030 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020002 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020001 85.714 378 54 0 1 378 378 1 0.0 399
ORI96000438 85.45 378 55 0 1 378 378 1 0.0 394
ORI96000437 85.45 378 55 0 1 378 378 1 0.0 394
ORI96000436 85.45 378 55 0 1 378 378 1 0.0 394
ORI96000416 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000409 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000368 85.753 372 53 0 1 372 1 372 0.0 394
ORI93020102 85.45 378 55 0 1 378 378 1 0.0 394
ORI96000367 85.753 372 53 0 1 372 1 372 0.0 394
ORI93020098 85.753 372 53 0 1 372 1 372 0.0 394
ORI93020096 85.45 378 55 0 1 378 378 1 0.0 394
ORI93020093 85.753 372 53 0 1 372 1 372 0.0 394
ORI94030301 85.753 372 53 0 1 372 1 372 0.0 394
ORI94030298 85.753 372 53 0 1 372 1 372 0.0 394
ORI92720079 85.753 372 53 0 1 372 1 372 0.0 394
ORI92720078 85.753 372 53 0 1 372 1 372 0.0 394
ORI92330207 85.45 378 55 0 1 378 378 1 0.0 394
ORI92320058 85.45 378 55 0 1 378 378 1 0.0 394
ORI92220053 85.753 372 53 0 1 372 1 372 0.0 394
ORI30020034 85.753 372 53 0 1 372 82 453 0.0 394
ORI10030083 85.45 378 55 0 1 378 378 1 0.0 394
ORI93020104 85.753 372 52 1 1 372 1 371 0.0 392
ORI96000417 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000415 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000410 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000407 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000404 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000402 85.484 372 54 0 1 372 1 372 0.0 388
ORI95030447 85.185 378 56 0 1 378 378 1 0.0 388
ORI94030299 85.484 372 54 0 1 372 1 372 0.0 388
ORI50020036 85.484 372 54 0 1 372 1 372 0.0 388
ORI30020033 85.484 372 54 0 1 372 1 372 0.0 388
ORI10020028 85.484 372 54 0 1 372 1 372 0.0 388
ORI93020103 85.224 379 53 3 1 378 377 1 0.0 387
ORI96000413 85.215 372 55 0 1 372 1 372 0.0 383
ORI96000412 85.215 372 55 0 1 372 1 372 0.0 383
ORI96000403 85.215 372 55 0 1 372 1 372 0.0 383
ORI10020012 85.215 372 55 0 1 372 1 372 0.0 383
ORI94030300 84.946 372 56 0 1 372 1 372 0.0 377
ORI10030084 84.656 378 58 0 1 378 378 1 0.0 377
ORI94030323 83.905 379 49 9 7 378 377 4 0.0 351
ORI96000432 83.871 372 49 11 7 372 367 1 0.0 344
ORI96000434 82.759 377 52 9 7 377 374 5 0.0 324
ORI96000393 82.759 377 52 9 7 377 8 377 0.0 324
ORI95020130 82.759 377 52 9 7 377 8 377 0.0 324
ORI93020089 82.759 377 52 9 7 377 8 377 0.0 324
ORI92020049 82.759 377 52 9 7 377 8 377 0.0 324
ORI93020120 82.749 371 55 8 7 372 367 1 0.0 322
ORI94030388 82.262 389 47 18 1 377 1 379 0.0 316
ORI93020111 81.842 380 63 5 1 377 381 5 0.0 315
ORI92520072 81.842 380 63 5 1 377 381 5 0.0 315
ORI95020126 81.989 372 56 11 7 372 367 1 0.0 305
ORI96000429 81.72 372 57 10 7 372 367 1 0.0 300
ORI95020123 81.402 371 60 9 7 372 367 1 0.0 294
ORI96000423 83.849 291 43 4 42 330 331 43 0.0 274