RefSeq NC_013008.1
Accession number NC_013008.1
DoriC accession number ORI93020099
OriC length 378 nt
OriC AT content 0.566138
The location of oriC region 4778216..4778593 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTTATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CDRGGATCCKG

StartP-valueSite
863.05e-07TGAGAAAGACCTGGGATCCTGGGTATTAAAA
1771.48e-06CTGTGGATAACAAGGATCCGGCTTTTAAGAT
2337.76e-06TGTGAATGATCGGTGATCCTGGACCGTATAA
3311.52e-05CCGGTTGATCCAAGCTTCCTGACAGAGTTAT
2552.31e-05ACCGTATAAGCTGGGATCAGAATGAGGGGTT

Motif CTGTGGAT

StartP-valueSite
1671.65e-05TCGCACTGCCCTGTGGATAACAAGGATC
482.81e-05GAAGCCCGGGCCGTGGATTCTACTCAAC
3081.01e-04AACGGTTGTTCTTTGGATAACTACCGGT
2221.01e-04GGATCATTAACTGTGAATGATCGGTGAT
3221.92e-04GGATAACTACCGGTTGATCCAAGCTTCC

Motif GATCGCAC

StartP-valueSite
3609.70e-06ATCCACAGTAGATCGCACGATCTGTATA
1559.70e-06CTCTTATTAGGATCGCACTGCCCTGTGG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000422 100.0 378 0 0 1 378 1 378 0.0 699
ORI93020099 100.0 378 0 0 1 378 1 378 0.0 699
ORI92720076 100.0 378 0 0 1 378 1 378 0.0 699
ORI10020005 100.0 378 0 0 1 378 1 378 0.0 699
ORI10020004 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000414 99.735 378 1 0 1 378 1 378 0.0 693
ORI93020113 99.735 378 1 0 1 378 1 378 0.0 693
ORI92720080 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000408 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000405 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000400 99.471 378 2 0 1 378 378 1 0.0 688
ORI93020090 99.471 378 2 0 1 378 1 378 0.0 688
ORI92330196 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000364 99.471 378 2 0 1 378 378 1 0.0 688
ORI10020002 99.471 378 2 0 1 378 1 378 0.0 688
ORI10020001 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000438 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000437 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000436 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000416 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000411 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000409 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000368 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020102 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000367 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020098 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020096 99.206 378 3 0 1 378 378 1 0.0 682
ORI93020093 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030302 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030301 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030298 99.206 378 3 0 1 378 1 378 0.0 682
ORI92720078 99.206 378 3 0 1 378 1 378 0.0 682
ORI92330207 99.206 378 3 0 1 378 378 1 0.0 682
ORI92320059 99.206 378 3 0 1 378 1 378 0.0 682
ORI92320058 99.206 378 3 0 1 378 378 1 0.0 682
ORI92220053 99.206 378 3 0 1 378 1 378 0.0 682
ORI10030083 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000417 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000415 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000410 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000407 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000406 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000401 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000390 98.942 378 4 0 1 378 1 378 0.0 676
ORI95030447 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000365 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030303 98.942 378 4 0 1 378 1 378 0.0 676
ORI92220052 98.942 378 4 0 1 378 1 378 0.0 676
ORI30020033 98.942 378 4 0 1 378 1 378 0.0 676
ORI10030070 98.942 378 4 0 1 378 378 1 0.0 676
ORI10030036 98.942 378 4 0 1 378 378 1 0.0 676
ORI10030030 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020104 98.942 378 3 1 1 378 1 377 0.0 675
ORI96000413 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000412 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000404 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000403 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000402 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030299 98.677 378 5 0 1 378 1 378 0.0 671
ORI92720079 98.677 378 5 0 1 378 1 378 0.0 671
ORI50020036 98.677 378 5 0 1 378 1 378 0.0 671
ORI30020034 98.677 378 5 0 1 378 82 459 0.0 671
ORI10020028 98.677 378 5 0 1 378 1 378 0.0 671
ORI10020012 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020103 98.677 378 4 1 1 378 377 1 0.0 669
ORI94030300 98.413 378 6 0 1 378 1 378 0.0 665
ORI10030084 98.413 378 6 0 1 378 378 1 0.0 665
ORI93030277 90.0 380 34 4 1 378 378 1 0.0 488
ORI92230170 89.008 373 39 2 1 372 1 372 0.0 460
ORI96000399 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520066 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520065 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520068 86.828 372 49 0 1 372 1 372 0.0 416
ORI95030469 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030444 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020132 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030443 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030442 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020131 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020129 86.28 379 50 2 1 378 378 1 0.0 411
ORI95030441 86.243 378 52 0 1 378 396 19 0.0 411
ORI95030436 86.559 372 50 0 1 372 1 372 0.0 411
ORI94030400 86.595 373 48 2 1 372 1 372 0.0 411
ORI92720083 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520073 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520067 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520064 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020021 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020015 86.28 379 50 2 1 378 378 1 0.0 411
ORI10020010 86.28 379 50 2 1 378 378 1 0.0 411
ORI10020009 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520071 85.979 378 53 0 1 378 378 1 0.0 405
ORI92230183 86.4 375 45 3 1 372 1 372 0.0 405
ORI10020023 86.29 372 51 0 1 372 1 372 0.0 405
ORI94030323 86.207 377 44 8 7 378 377 4 0.0 401
ORI96000434 86.126 382 39 11 1 375 381 7 0.0 399
ORI95020130 86.28 379 38 11 1 372 1 372 0.0 399
ORI93020089 86.28 379 38 11 1 372 1 372 0.0 399
ORI92020049 86.28 379 38 11 1 372 1 372 0.0 399
ORI96000393 86.016 379 39 11 1 372 1 372 0.0 394
ORI92230179 86.096 374 43 8 1 370 377 9 0.0 394
ORI92520072 85.564 381 43 11 1 375 381 7 0.0 388
ORI94030388 86.141 368 38 13 1 361 1 362 0.0 385
ORI93020111 85.302 381 44 11 1 375 381 7 0.0 383
ORI96000432 83.905 379 49 12 1 372 374 1 0.0 351
ORI95020123 81.481 378 60 10 1 372 374 1 0.0 302
ORI93020120 81.217 378 61 9 1 372 374 1 0.0 296
ORI96000429 80.739 379 61 11 1 372 374 1 0.0 285
ORI95020126 80.423 378 64 10 1 372 374 1 0.0 279
ORI93020094 76.543 243 46 10 89 326 289 53 4.45e-29 122
ORI70020038 83.824 68 6 3 109 176 125 187 3.54e-10 60