RefSeq NC_017328.1
Accession number NC_017328.1
DoriC accession number ORI96000390
OriC length 378 nt
OriC AT content 0.566138
The location of oriC region 3972636..3973013 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGATTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAGCTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CCTGGR

StartP-valueSite
931.48e-04GACCTGGGATCCTGGGTATTAAAAAG
851.48e-04TTGAGAAAGACCTGGGATCCTGGGTA
2403.22e-04GATCGGTGATCCTGGACCGTATAAGC
2043.22e-04AGATCAACAACCTGGAAAGGATCATT
424.24e-04TGGATTGAAGCCCGGGCCGTGGATTC

Motif CTGTGGAT

StartP-valueSite
1671.70e-05TCGCACTGCCCTGTGGATAACAAGGATC
482.88e-05GAAGCCCGGGCCGTGGATTCTACTCAAC
3081.03e-04AACGGTTGTTCTTTGGATAGCTACCGGT
2221.03e-04GGATCATTAACTGTGAATGATCGGTGAT
3221.95e-04GGATAGCTACCGGTTGATCCAAGCTTCC

Motif ARGATC

StartP-valueSite
2112.56e-04CAACCTGGAAAGGATCATTAACTGTG
1792.56e-04GTGGATAACAAGGATCCGATTTTTAA
1532.56e-04ATCTCTTATTAGGATCGCACTGCCCT
1935.59e-04TCCGATTTTTAAGATCAACAACCTGG
1095.59e-04TATTAAAAAGAAGATCTATTTATTTA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000390 100.0 378 0 0 1 378 1 378 0.0 699
ORI10030036 100.0 378 0 0 1 378 378 1 0.0 699
ORI10030030 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000414 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020113 99.206 378 3 0 1 378 1 378 0.0 682
ORI92720080 99.206 378 3 0 1 378 1 378 0.0 682
ORI30020034 99.206 378 3 0 1 378 82 459 0.0 682
ORI10030083 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000422 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000408 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000405 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000400 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020099 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020090 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720076 98.942 378 4 0 1 378 1 378 0.0 676
ORI92330196 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000364 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020005 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020004 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020002 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020001 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000438 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000437 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000436 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000416 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000411 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000409 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000368 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020102 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000367 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020098 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020096 98.677 378 5 0 1 378 378 1 0.0 671
ORI93020093 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030302 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030301 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030298 98.677 378 5 0 1 378 1 378 0.0 671
ORI92720078 98.677 378 5 0 1 378 1 378 0.0 671
ORI92330207 98.677 378 5 0 1 378 378 1 0.0 671
ORI92320059 98.677 378 5 0 1 378 1 378 0.0 671
ORI92320058 98.677 378 5 0 1 378 378 1 0.0 671
ORI92220053 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000417 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000415 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000410 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000407 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000406 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000401 98.413 378 6 0 1 378 1 378 0.0 665
ORI95030447 98.413 378 6 0 1 378 378 1 0.0 665
ORI96000365 98.413 378 6 0 1 378 1 378 0.0 665
ORI94030303 98.413 378 6 0 1 378 1 378 0.0 665
ORI92220052 98.413 378 6 0 1 378 1 378 0.0 665
ORI30020033 98.413 378 6 0 1 378 1 378 0.0 665
ORI10030070 98.413 378 6 0 1 378 378 1 0.0 665
ORI93020104 98.413 378 5 1 1 378 1 377 0.0 664
ORI96000413 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000412 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000404 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000403 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000402 98.148 378 7 0 1 378 1 378 0.0 660
ORI94030299 98.148 378 7 0 1 378 1 378 0.0 660
ORI92720079 98.148 378 7 0 1 378 1 378 0.0 660
ORI50020036 98.148 378 7 0 1 378 1 378 0.0 660
ORI10020028 98.148 378 7 0 1 378 1 378 0.0 660
ORI10020012 98.148 378 7 0 1 378 1 378 0.0 660
ORI93020103 98.148 378 6 1 1 378 377 1 0.0 658
ORI94030300 97.884 378 8 0 1 378 1 378 0.0 654
ORI10030084 97.884 378 8 0 1 378 378 1 0.0 654
ORI93030277 89.474 380 36 4 1 378 378 1 0.0 477
ORI92230170 89.276 373 38 2 1 372 1 372 0.0 466
ORI96000399 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520066 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520065 87.097 372 48 0 1 372 1 372 0.0 422
ORI92520068 86.828 372 49 0 1 372 1 372 0.0 416
ORI95030469 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030444 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020132 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030443 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030442 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020131 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020129 86.28 379 50 2 1 378 378 1 0.0 411
ORI95030441 86.243 378 52 0 1 378 396 19 0.0 411
ORI95030436 86.559 372 50 0 1 372 1 372 0.0 411
ORI92720083 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520073 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520067 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520064 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020021 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020015 86.28 379 50 2 1 378 378 1 0.0 411
ORI10020010 86.28 379 50 2 1 378 378 1 0.0 411
ORI10020009 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520071 85.979 378 53 0 1 378 378 1 0.0 405
ORI92230183 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020023 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000434 86.126 382 39 11 1 375 381 7 0.0 399
ORI95020130 86.28 379 38 11 1 372 1 372 0.0 399
ORI94030400 86.096 374 48 4 1 372 1 372 0.0 399
ORI93020089 86.28 379 38 11 1 372 1 372 0.0 399
ORI92520070 86.022 372 52 0 1 372 1 372 0.0 399
ORI92020049 86.28 379 38 11 1 372 1 372 0.0 399
ORI96000393 86.016 379 39 12 1 372 1 372 0.0 394
ORI92230179 86.17 376 39 11 1 370 377 9 0.0 394
ORI94030323 85.714 378 44 10 7 378 377 4 0.0 390
ORI92520072 85.564 381 43 11 1 375 381 7 0.0 388
ORI94030388 86.104 367 40 11 1 361 1 362 0.0 385
ORI93020111 85.302 381 44 11 1 375 381 7 0.0 383
ORI96000432 83.377 379 51 12 1 372 374 1 0.0 340
ORI93020120 81.746 378 59 9 1 372 374 1 0.0 307
ORI95020123 81.481 378 60 10 1 372 374 1 0.0 302
ORI96000429 81.266 379 59 11 1 372 374 1 0.0 296
ORI95020126 80.423 378 64 10 1 372 374 1 0.0 279
ORI96000423 80.137 292 52 5 42 330 331 43 0.0 213
ORI93020094 76.955 243 45 10 89 326 289 53 9.56e-31 128