RefSeq NC_008563.1
Accession number NC_008563.1
DoriC accession number ORI50020036
OriC length 378 nt
OriC AT content 0.566138
The location of oriC region 4219299..4219676 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGGCCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CCTGGG

StartP-valueSite
2401.45e-04GATCGGTGATCCTGGGCCGTATAAGC
931.45e-04GACCTGGGATCCTGGGTATTAAAAAG
851.45e-04TTGAGAAAGACCTGGGATCCTGGGTA
422.47e-04TGGATTGAAGCCCGGGCCGTGGATTC
1664.17e-04ATCGCACTGCCCTGTGGATAACAAGG

Motif ARGATC

StartP-valueSite
2112.52e-04CAACCTGGAAAGGATCATTAACTGTG
1792.52e-04GTGGATAACAAGGATCCGGCTTTTAA
1532.52e-04ATCTCTTATTAGGATCGCACTGCCCT
1935.55e-04TCCGGCTTTTAAGATCAACAACCTGG
1095.55e-04TATTAAAAAGAAGATCTATTTATTTA

Motif GATCTGT

StartP-valueSite
3686.95e-05TAGATCGCACGATCTGTATAC
1276.95e-05TTTATTTAGAGATCTGTTCTATTGTGA
1421.27e-04GTTCTATTGTGATCTCTTATTAGGATC
2301.86e-04AACTGTGAATGATCGGTGATCCTGGGC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000404 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000402 100.0 378 0 0 1 378 1 378 0.0 699
ORI94030299 100.0 378 0 0 1 378 1 378 0.0 699
ORI50020036 100.0 378 0 0 1 378 1 378 0.0 699
ORI10020028 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000410 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000406 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000368 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000365 99.206 378 3 0 1 378 1 378 0.0 682
ORI30020033 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000438 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000437 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000436 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000416 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000414 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000413 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000412 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000411 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000409 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000408 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000405 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000403 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000400 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020113 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020102 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000367 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020098 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020096 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020093 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020090 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030302 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030301 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030298 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720080 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720078 98.942 378 4 0 1 378 1 378 0.0 676
ORI92330207 98.942 378 4 0 1 378 378 1 0.0 676
ORI92320059 98.942 378 4 0 1 378 1 378 0.0 676
ORI92330196 98.942 378 4 0 1 378 1 378 0.0 676
ORI92320058 98.942 378 4 0 1 378 378 1 0.0 676
ORI92220053 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000364 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020012 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020002 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020001 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000422 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000417 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000415 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000407 98.677 378 5 0 1 378 1 378 0.0 671
ORI95030447 98.677 378 5 0 1 378 378 1 0.0 671
ORI93020099 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030300 98.677 378 5 0 1 378 1 378 0.0 671
ORI92720076 98.677 378 5 0 1 378 1 378 0.0 671
ORI92220052 98.677 378 5 0 1 378 1 378 0.0 671
ORI10030083 98.677 378 5 0 1 378 378 1 0.0 671
ORI10030070 98.677 378 5 0 1 378 378 1 0.0 671
ORI10020005 98.677 378 5 0 1 378 1 378 0.0 671
ORI10020004 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020104 98.677 378 4 1 1 378 1 377 0.0 669
ORI92720079 98.413 378 6 0 1 378 1 378 0.0 665
ORI93020103 98.413 378 5 1 1 378 377 1 0.0 664
ORI96000401 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000390 98.148 378 7 0 1 378 1 378 0.0 660
ORI94030303 98.148 378 7 0 1 378 1 378 0.0 660
ORI10030084 98.148 378 7 0 1 378 378 1 0.0 660
ORI10030036 98.148 378 7 0 1 378 378 1 0.0 660
ORI10030030 98.148 378 7 0 1 378 1 378 0.0 660
ORI30020034 97.884 378 8 0 1 378 82 459 0.0 654
ORI93030277 89.474 380 36 4 1 378 378 1 0.0 477
ORI92230170 88.74 373 40 2 1 372 1 372 0.0 455
ORI96000399 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520066 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520065 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520068 86.29 372 51 0 1 372 1 372 0.0 405
ORI94030323 86.207 377 44 8 7 378 377 4 0.0 401
ORI96000434 86.126 382 39 11 1 375 381 7 0.0 399
ORI95030469 86.022 372 52 0 1 372 1 372 0.0 399
ORI95030444 86.022 372 52 0 1 372 1 372 0.0 399
ORI95020132 86.022 372 52 0 1 372 1 372 0.0 399
ORI95030443 86.022 372 52 0 1 372 1 372 0.0 399
ORI95030442 86.022 372 52 0 1 372 1 372 0.0 399
ORI95020131 86.022 372 52 0 1 372 1 372 0.0 399
ORI95020130 86.28 379 38 11 1 372 1 372 0.0 399
ORI95020129 85.752 379 52 2 1 378 378 1 0.0 399
ORI95030441 85.714 378 54 0 1 378 396 19 0.0 399
ORI95030436 86.022 372 52 0 1 372 1 372 0.0 399
ORI94030400 86.059 373 50 2 1 372 1 372 0.0 399
ORI93020089 86.28 379 38 11 1 372 1 372 0.0 399
ORI92720083 86.022 372 52 0 1 372 1 372 0.0 399
ORI92520073 86.022 372 52 0 1 372 1 372 0.0 399
ORI92520067 86.022 372 52 0 1 372 1 372 0.0 399
ORI92520064 86.022 372 52 0 1 372 1 372 0.0 399
ORI92020049 86.28 379 38 11 1 372 1 372 0.0 399
ORI10020021 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020015 85.752 379 52 2 1 378 378 1 0.0 399
ORI10020010 85.752 379 52 2 1 378 378 1 0.0 399
ORI10020009 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000393 86.016 379 39 12 1 372 1 372 0.0 394
ORI92520071 85.45 378 55 0 1 378 378 1 0.0 394
ORI92230183 85.753 372 53 0 1 372 1 372 0.0 394
ORI10020023 85.753 372 53 0 1 372 1 372 0.0 394
ORI92520070 85.484 372 54 0 1 372 1 372 0.0 388
ORI92230179 85.561 374 45 8 1 370 377 9 0.0 383
ORI92520072 85.039 381 45 11 1 375 381 7 0.0 377
ORI94030388 85.598 368 40 13 1 361 1 362 0.0 374
ORI93020111 84.777 381 46 11 1 375 381 7 0.0 372
ORI96000432 83.905 379 49 12 1 372 374 1 0.0 351
ORI93020120 81.746 378 59 9 1 372 374 1 0.0 307
ORI95020123 81.432 377 62 8 1 372 374 1 0.0 302
ORI96000429 81.217 378 61 10 1 372 374 1 0.0 296
ORI95020126 80.952 378 62 10 1 372 374 1 0.0 291
ORI96000423 80.822 292 50 5 42 330 331 43 0.0 224
ORI93020094 76.891 238 44 10 89 321 289 58 1.24e-29 124