RefSeq NC_012947.1
Accession number NC_012947.1
DoriC accession number ORI93020096
OriC length 378 nt
OriC AT content 0.560847
The location of oriC region 4528998..4529375 nt
Browse in NCBI
OriC map
OriC sequences
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
miocGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgida
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
mioCGTATACAGATCGTGCGATCTACTGTGGATAACTCTGTCAGGAAGCTTGGATCAACCGGTAGTTATCCAAGGAACAACGGTTGTTCAGTTTTTGAGTTGTGTATAACCCCTCATTCTGATCCCAGCTTATACGGTCCAGGATCACCGATCATTCACAGTTAATGATCCTTTCCAGGTTGTTGATCTTAAAAGCCGGATCCTTGTTATCCACAGGGCAGTGCGATCCTAATAAGAGATCACAATAGAACAGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCTCAAGCCGACAAAGTTGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CHAGGATCMMCGG

StartP-valueSite
1354.91e-07CTTATACGGTCCAGGATCACCGATCATTCACAG
2825.22e-07TTTTTAATACCCAGGATCCCAGGTCTTTCTCAA
676.35e-07GGTAGTTATCCAAGGAACAACGGTTGTTCAGTT
451.30e-06TGTCAGGAAGCTTGGATCAACCGGTAGTTATCC
3191.85e-06ACAAAGTTGAGTAGAATCCACGGCCCGGGCTTC

Motif GATCYT

StartP-valueSite
2212.56e-04AGGGCAGTGCGATCCTAATAAGAGAT
1952.56e-04TTAAAAGCCGGATCCTTGTTATCCAC
1632.56e-04CACAGTTAATGATCCTTTCCAGGTTG
2655.62e-04TAAATAAATAGATCTTCTTTTTAATA
1815.62e-04CCAGGTTGTTGATCTTAAAAGCCGGA

Motif ASAGATC

StartP-valueSite
2466.78e-05TCACAATAGAACAGATCTCTAAATAAA
56.78e-05GTATACAGATCGTGCGATCTA
2311.25e-04GATCCTAATAAGAGATCACAATAGAAC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000416 100.0 378 0 0 1 378 378 1 0.0 699
ORI96000409 100.0 378 0 0 1 378 378 1 0.0 699
ORI93020102 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000367 100.0 378 0 0 1 378 378 1 0.0 699
ORI93020098 100.0 378 0 0 1 378 378 1 0.0 699
ORI93020096 100.0 378 0 0 1 378 1 378 0.0 699
ORI93020093 100.0 378 0 0 1 378 378 1 0.0 699
ORI94030298 100.0 378 0 0 1 378 378 1 0.0 699
ORI92330207 100.0 378 0 0 1 378 1 378 0.0 699
ORI92320058 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000417 99.735 378 1 0 1 378 378 1 0.0 693
ORI96000415 99.735 378 1 0 1 378 378 1 0.0 693
ORI96000407 99.735 378 1 0 1 378 378 1 0.0 693
ORI95030447 99.735 378 1 0 1 378 1 378 0.0 693
ORI92220052 99.735 378 1 0 1 378 378 1 0.0 693
ORI10030070 99.735 378 1 0 1 378 1 378 0.0 693
ORI93020104 99.735 378 0 1 1 378 377 1 0.0 691
ORI96000438 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000437 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000436 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000414 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000411 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000408 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000405 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000400 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020113 99.471 378 2 0 1 378 378 1 0.0 688
ORI93020090 99.471 378 2 0 1 378 378 1 0.0 688
ORI94030302 99.471 378 2 0 1 378 378 1 0.0 688
ORI94030301 99.471 378 2 0 1 378 378 1 0.0 688
ORI92720080 99.471 378 2 0 1 378 378 1 0.0 688
ORI92720078 99.471 378 2 0 1 378 378 1 0.0 688
ORI92320059 99.471 378 2 0 1 378 378 1 0.0 688
ORI92330196 99.471 378 2 0 1 378 378 1 0.0 688
ORI92220053 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000364 99.471 378 2 0 1 378 1 378 0.0 688
ORI10020002 99.471 378 2 0 1 378 378 1 0.0 688
ORI10020001 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020103 99.471 378 1 1 1 378 1 377 0.0 686
ORI96000422 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000410 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000406 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000368 99.206 378 3 0 1 378 378 1 0.0 682
ORI93020099 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000365 99.206 378 3 0 1 378 378 1 0.0 682
ORI92720076 99.206 378 3 0 1 378 378 1 0.0 682
ORI30020033 99.206 378 3 0 1 378 378 1 0.0 682
ORI10030084 99.206 378 3 0 1 378 1 378 0.0 682
ORI10030083 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020005 99.206 378 3 0 1 378 378 1 0.0 682
ORI10020004 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000413 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000412 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000404 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000403 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000402 98.942 378 4 0 1 378 378 1 0.0 676
ORI94030299 98.942 378 4 0 1 378 378 1 0.0 676
ORI92720079 98.942 378 4 0 1 378 378 1 0.0 676
ORI50020036 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020028 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020012 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000401 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000390 98.677 378 5 0 1 378 378 1 0.0 671
ORI94030303 98.677 378 5 0 1 378 378 1 0.0 671
ORI94030300 98.677 378 5 0 1 378 378 1 0.0 671
ORI10030036 98.677 378 5 0 1 378 1 378 0.0 671
ORI10030030 98.677 378 5 0 1 378 378 1 0.0 671
ORI30020034 98.413 378 6 0 1 378 459 82 0.0 665
ORI93030277 89.737 380 35 4 1 378 1 378 0.0 483
ORI92230170 88.74 373 40 2 7 378 372 1 0.0 455
ORI96000399 86.828 372 49 0 7 378 372 1 0.0 416
ORI92520066 86.828 372 49 0 7 378 372 1 0.0 416
ORI92520065 86.828 372 49 0 7 378 372 1 0.0 416
ORI94030323 86.737 377 42 8 1 372 4 377 0.0 412
ORI92520068 86.559 372 50 0 7 378 372 1 0.0 411
ORI95030469 86.29 372 51 0 7 378 372 1 0.0 405
ORI95030444 86.29 372 51 0 7 378 372 1 0.0 405
ORI95020132 86.29 372 51 0 7 378 372 1 0.0 405
ORI95030443 86.29 372 51 0 7 378 372 1 0.0 405
ORI95030442 86.29 372 51 0 7 378 372 1 0.0 405
ORI95020131 86.29 372 51 0 7 378 372 1 0.0 405
ORI95020129 86.016 379 51 2 1 378 1 378 0.0 405
ORI95030441 85.979 378 53 0 1 378 19 396 0.0 405
ORI95030436 86.29 372 51 0 7 378 372 1 0.0 405
ORI94030400 86.327 373 49 2 7 378 372 1 0.0 405
ORI92720083 86.29 372 51 0 7 378 372 1 0.0 405
ORI92520073 86.29 372 51 0 7 378 372 1 0.0 405
ORI92520067 86.29 372 51 0 7 378 372 1 0.0 405
ORI92520064 86.29 372 51 0 7 378 372 1 0.0 405
ORI10020021 86.29 372 51 0 7 378 372 1 0.0 405
ORI10020015 86.016 379 51 2 1 378 1 378 0.0 405
ORI10020010 86.016 379 51 2 1 378 1 378 0.0 405
ORI10020009 86.29 372 51 0 7 378 372 1 0.0 405
ORI92520071 85.714 378 54 0 1 378 1 378 0.0 399
ORI92230183 86.022 372 52 0 7 378 372 1 0.0 399
ORI10020023 86.022 372 52 0 7 378 372 1 0.0 399
ORI96000434 85.864 382 40 11 4 378 7 381 0.0 394
ORI95020130 86.016 379 39 11 7 378 372 1 0.0 394
ORI93020089 86.016 379 39 11 7 378 372 1 0.0 394
ORI92520070 85.753 372 53 0 7 378 372 1 0.0 394
ORI92020049 86.016 379 39 11 7 378 372 1 0.0 394
ORI96000393 85.752 379 40 11 7 378 372 1 0.0 388
ORI92230179 85.829 374 44 8 9 378 9 377 0.0 388
ORI92520072 85.302 381 44 11 4 378 7 381 0.0 383
ORI94030388 85.87 368 39 13 18 378 362 1 0.0 379
ORI93020111 85.039 381 45 11 4 378 7 381 0.0 377
ORI96000432 83.905 379 49 12 7 378 1 374 0.0 351
ORI95020123 81.167 377 63 8 7 378 1 374 0.0 296
ORI93020120 81.217 378 61 9 7 378 1 374 0.0 296
ORI95020126 80.952 378 62 10 7 378 1 374 0.0 291
ORI96000429 80.739 379 61 12 7 378 1 374 0.0 285
ORI96000423 80.479 292 51 5 49 337 43 331 0.0 219
ORI93020094 76.955 243 45 10 53 290 53 289 9.56e-31 128