RefSeq NC_017540.1
Accession number NC_017540.1
DoriC accession number ORI96000393
OriC length 381 nt
OriC AT content 0.580052
The location of oriC region 4997031..4997411 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidaGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioc
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
gidAGGTGGTCTGCCTCGCATAAAGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTCGTCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAAAAAGAAGATCTTTATATAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGACTCTCTTTGTGGATAAGTCGGATCCGCGAAGTAAAATCAAAAGCTTAAGAAGGATCACTATCTGTGAATGATCGGTGATCCTGGTCCGTATAAGCTGGGATCAGAATGAAGGGTTATGCACAGCTCAAAAACCATACTACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTTAAGCATGGTTATCCACAGAAGATCGGACGATCTTTACAATTCmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AATRMHBGGTKATCC

StartP-valueSite
2271.27e-08ACTATCTGTGAATGATCGGTGATCCTGGTCCGTAT
2656.13e-07CTGGGATCAGAATGAAGGGTTATGCACAGCTCAAA
3171.02e-06TCTTTGGATAACTACCGGTTGATCCAAGCTTTTAA
821.28e-06TCTTTCGAGAAAGACTCCGGGATCCTGAGTATTAA
3391.80e-06TCCAAGCTTTTAAGCATGGTTATCCACAGAAGATC

Motif GATCTBT

StartP-valueSite
3689.06e-05AAGATCGGACGATCTTTACAATTC
1139.06e-05TTAAAAAGAAGATCTTTATATAGAGAT
1421.50e-04GTTCTATTGTGATCTCTTATTAGGATC
1272.22e-04TTTATATAGAGATCTGTTCTATTGTGA

Motif VGGATC

StartP-valueSite
2112.45e-04AAGCTTAAGAAGGATCACTATCTGTG
1532.45e-04ATCTCTTATTAGGATCGACTCTCTTT
1794.06e-04GTGGATAAGTCGGATCCGCGAAGTAA
2576.02e-04CGTATAAGCTGGGATCAGAATGAAGG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000393 100.0 381 0 0 1 381 1 381 0.0 704
ORI96000434 99.738 381 1 0 1 381 381 1 0.0 699
ORI95020130 99.738 381 1 0 1 381 1 381 0.0 699
ORI93020089 99.738 381 1 0 1 381 1 381 0.0 699
ORI92020049 99.738 381 1 0 1 381 1 381 0.0 699
ORI92520072 96.063 381 15 0 1 381 381 1 0.0 621
ORI93020111 95.801 381 16 0 1 381 381 1 0.0 616
ORI94030388 92.105 380 28 2 1 378 1 380 0.0 534
ORI94030323 87.597 387 37 10 2 381 383 1 0.0 438
ORI93030277 87.131 373 43 4 8 377 372 2 0.0 418
ORI96000414 86.28 379 38 11 1 372 1 372 0.0 399
ORI93020113 86.28 379 38 11 1 372 1 372 0.0 399
ORI92720080 86.28 379 38 11 1 372 1 372 0.0 399
ORI96000422 86.016 379 39 11 1 372 1 372 0.0 394
ORI96000408 86.016 379 39 11 1 372 1 372 0.0 394
ORI96000405 86.016 379 39 11 1 372 1 372 0.0 394
ORI96000404 86.016 379 39 12 1 372 1 372 0.0 394
ORI96000402 86.016 379 39 12 1 372 1 372 0.0 394
ORI96000401 86.053 380 37 13 1 372 1 372 0.0 394
ORI96000400 85.864 382 40 11 1 375 378 4 0.0 394
ORI96000390 86.016 379 39 12 1 372 1 372 0.0 394
ORI93020099 86.016 379 39 11 1 372 1 372 0.0 394
ORI93020090 86.016 379 39 11 1 372 1 372 0.0 394
ORI94030303 86.053 380 37 13 1 372 1 372 0.0 394
ORI94030299 86.016 379 39 12 1 372 1 372 0.0 394
ORI92720076 86.016 379 39 11 1 372 1 372 0.0 394
ORI92330196 86.016 379 39 11 1 372 1 372 0.0 394
ORI92220052 86.016 379 39 11 1 372 1 372 0.0 394
ORI50020036 86.016 379 39 12 1 372 1 372 0.0 394
ORI10020028 86.016 379 39 12 1 372 1 372 0.0 394
ORI96000364 85.864 382 40 11 1 375 378 4 0.0 394
ORI10030083 85.864 382 40 11 1 375 378 4 0.0 394
ORI10030036 85.864 382 40 12 1 375 378 4 0.0 394
ORI10030030 86.016 379 39 12 1 372 1 372 0.0 394
ORI10020005 86.016 379 39 11 1 372 1 372 0.0 394
ORI10020004 86.016 379 39 11 1 372 1 372 0.0 394
ORI10020002 86.016 379 39 11 1 372 1 372 0.0 394
ORI10020001 85.864 382 40 11 1 375 378 4 0.0 394
ORI93020104 86.016 379 38 11 1 372 1 371 0.0 392
ORI96000438 85.602 382 41 11 1 375 378 4 0.0 388
ORI96000437 85.602 382 41 11 1 375 378 4 0.0 388
ORI96000436 85.602 382 41 11 1 375 378 4 0.0 388
ORI96000416 85.752 379 40 11 1 372 1 372 0.0 388
ORI96000411 85.752 379 40 11 1 372 1 372 0.0 388
ORI96000409 85.752 379 40 11 1 372 1 372 0.0 388
ORI96000406 85.752 379 40 12 1 372 1 372 0.0 388
ORI96000368 85.752 379 40 12 1 372 1 372 0.0 388
ORI93020102 85.602 382 41 11 1 375 378 4 0.0 388
ORI96000367 85.752 379 40 11 1 372 1 372 0.0 388
ORI93020098 85.752 379 40 11 1 372 1 372 0.0 388
ORI93020096 85.602 382 41 11 1 375 378 4 0.0 388
ORI93020093 85.752 379 40 11 1 372 1 372 0.0 388
ORI96000365 85.752 379 40 12 1 372 1 372 0.0 388
ORI94030302 85.752 379 40 11 1 372 1 372 0.0 388
ORI94030301 85.752 379 40 11 1 372 1 372 0.0 388
ORI94030298 85.752 379 40 11 1 372 1 372 0.0 388
ORI92720078 85.752 379 40 11 1 372 1 372 0.0 388
ORI92330207 85.602 382 41 11 1 375 378 4 0.0 388
ORI92320059 85.752 379 40 11 1 372 1 372 0.0 388
ORI92320058 85.602 382 41 11 1 375 378 4 0.0 388
ORI92220053 85.752 379 40 11 1 372 1 372 0.0 388
ORI30020034 85.752 379 40 12 1 372 82 453 0.0 388
ORI10030070 85.602 382 41 11 1 375 378 4 0.0 388
ORI93020103 85.602 382 40 11 1 375 377 4 0.0 387
ORI96000417 85.488 379 41 11 1 372 1 372 0.0 383
ORI96000415 85.488 379 41 11 1 372 1 372 0.0 383
ORI96000410 85.488 379 41 12 1 372 1 372 0.0 383
ORI96000407 85.488 379 41 11 1 372 1 372 0.0 383
ORI95030447 85.34 382 42 11 1 375 378 4 0.0 383
ORI94030300 85.488 379 41 11 1 372 1 372 0.0 383
ORI30020033 85.488 379 41 12 1 372 1 372 0.0 383
ORI96000413 85.224 379 42 12 1 372 1 372 0.0 377
ORI96000412 85.224 379 42 12 1 372 1 372 0.0 377
ORI96000403 85.224 379 42 12 1 372 1 372 0.0 377
ORI92720079 85.224 379 42 11 1 372 1 372 0.0 377
ORI10020012 85.224 379 42 12 1 372 1 372 0.0 377
ORI96000432 84.921 378 47 9 1 372 374 1 0.0 374
ORI10030084 84.817 382 44 12 1 375 378 4 0.0 372
ORI92230170 84.865 370 47 8 8 372 7 372 0.0 364
ORI95020129 84.127 378 45 11 8 377 372 2 0.0 351
ORI10020015 84.127 378 45 11 8 377 372 2 0.0 351
ORI10020010 84.127 378 45 11 8 377 372 2 0.0 351
ORI96000399 83.733 375 52 8 8 377 7 377 0.0 346
ORI92520065 83.733 375 52 8 8 377 7 377 0.0 346
ORI92230179 83.69 374 53 7 8 377 371 2 0.0 346
ORI96000429 84.254 362 47 9 1 356 374 17 0.0 344
ORI95020123 84.254 362 47 9 1 356 374 17 0.0 344
ORI95030469 83.554 377 49 9 8 377 7 377 0.0 340
ORI95030444 83.554 377 49 9 8 377 7 377 0.0 340
ORI95020132 83.554 377 49 9 8 377 7 377 0.0 340
ORI95030443 83.554 377 49 9 8 377 7 377 0.0 340
ORI95030442 83.554 377 49 9 8 377 7 377 0.0 340
ORI95020131 83.554 377 49 9 8 377 7 377 0.0 340
ORI95030436 83.554 377 49 9 8 377 7 377 0.0 340
ORI94030400 83.511 376 51 10 8 377 7 377 0.0 340
ORI92520068 83.598 378 47 11 8 377 7 377 0.0 340
ORI92520066 83.598 378 47 11 8 377 7 377 0.0 340
ORI10020009 83.554 377 49 9 8 377 7 377 0.0 340
ORI93020120 83.889 360 52 5 1 356 374 17 0.0 339
ORI95030441 83.158 380 51 9 8 380 390 17 0.0 335
ORI92720083 83.289 377 50 9 8 377 7 377 0.0 335
ORI92520073 83.289 377 50 9 8 377 7 377 0.0 335
ORI92520067 83.333 378 48 11 8 377 7 377 0.0 335
ORI92520064 83.289 377 50 9 8 377 7 377 0.0 335
ORI92230183 83.333 378 48 11 8 377 7 377 0.0 335
ORI10020021 83.333 378 48 11 8 377 7 377 0.0 335
ORI92520071 83.024 377 51 9 8 377 372 2 0.0 329
ORI10020023 83.024 377 51 9 8 377 7 377 0.0 329
ORI95020126 83.471 363 48 11 1 356 374 17 0.0 327
ORI92520070 82.759 377 52 9 8 377 7 377 0.0 324
ORI96000423 78.635 337 59 11 43 372 331 1 0.0 211