RefSeq NC_013941.1
Accession number NC_013941.1
DoriC accession number ORI93020113
OriC length 378 nt
OriC AT content 0.563492
The location of oriC region 4606596..4606973 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CDRGGATCCKG

StartP-valueSite
863.12e-07TGAGAAAGACCTGGGATCCTGGGTATTAAAA
1771.52e-06CTGTGGATAACAAGGATCCGGCTTTTAAGAT
2337.92e-06TGTGAATGATCGGTGATCCTGGACCGTATAA
3311.54e-05CCGGTTGATCCAAGCTTCCTGACAGAGTTAT
2552.34e-05ACCGTATAAGCTGGGATCAGAATGAGGGGTT

Motif CTGTGGAT

StartP-valueSite
1671.66e-05TCGCACTGCCCTGTGGATAACAAGGATC
482.84e-05GAAGCCCGGGCCGTGGATTCTACTCAAC
3081.01e-04AACGGTTGTTCTTTGGATAACTACCGGT
2221.01e-04GGATCATTAACTGTGAATGATCGGTGAT
3221.92e-04GGATAACTACCGGTTGATCCAAGCTTCC

Motif GATCTVT

StartP-valueSite
3686.90e-05TAGATCGCACGATCTGTATAC
1276.90e-05TTTATTTAGAGATCTGTTCTATTGTGA
1421.25e-04GTTCTATTGTGATCTCTTATTAGGATC
1112.07e-04TTAAAAAGAAGATCTATTTATTTAGAG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000414 100.0 378 0 0 1 378 1 378 0.0 699
ORI93020113 100.0 378 0 0 1 378 1 378 0.0 699
ORI92720080 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000422 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000408 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000405 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000400 99.735 378 1 0 1 378 378 1 0.0 693
ORI93020099 99.735 378 1 0 1 378 1 378 0.0 693
ORI93020090 99.735 378 1 0 1 378 1 378 0.0 693
ORI92720076 99.735 378 1 0 1 378 1 378 0.0 693
ORI92330196 99.735 378 1 0 1 378 1 378 0.0 693
ORI96000364 99.735 378 1 0 1 378 378 1 0.0 693
ORI10020005 99.735 378 1 0 1 378 1 378 0.0 693
ORI10020004 99.735 378 1 0 1 378 1 378 0.0 693
ORI10020002 99.735 378 1 0 1 378 1 378 0.0 693
ORI10020001 99.735 378 1 0 1 378 378 1 0.0 693
ORI96000438 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000437 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000436 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000416 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000411 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000409 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000368 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020102 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000367 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020098 99.471 378 2 0 1 378 1 378 0.0 688
ORI93020096 99.471 378 2 0 1 378 378 1 0.0 688
ORI93020093 99.471 378 2 0 1 378 1 378 0.0 688
ORI94030302 99.471 378 2 0 1 378 1 378 0.0 688
ORI94030301 99.471 378 2 0 1 378 1 378 0.0 688
ORI94030298 99.471 378 2 0 1 378 1 378 0.0 688
ORI92720078 99.471 378 2 0 1 378 1 378 0.0 688
ORI92330207 99.471 378 2 0 1 378 378 1 0.0 688
ORI92320059 99.471 378 2 0 1 378 1 378 0.0 688
ORI92320058 99.471 378 2 0 1 378 378 1 0.0 688
ORI92220053 99.471 378 2 0 1 378 1 378 0.0 688
ORI10030083 99.471 378 2 0 1 378 378 1 0.0 688
ORI96000417 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000415 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000410 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000407 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000406 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000401 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000390 99.206 378 3 0 1 378 1 378 0.0 682
ORI95030447 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000365 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030303 99.206 378 3 0 1 378 1 378 0.0 682
ORI92220052 99.206 378 3 0 1 378 1 378 0.0 682
ORI30020033 99.206 378 3 0 1 378 1 378 0.0 682
ORI10030070 99.206 378 3 0 1 378 378 1 0.0 682
ORI10030036 99.206 378 3 0 1 378 378 1 0.0 682
ORI10030030 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020104 99.206 378 2 1 1 378 1 377 0.0 680
ORI96000413 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000412 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000404 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000403 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000402 98.942 378 4 0 1 378 1 378 0.0 676
ORI94030299 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720079 98.942 378 4 0 1 378 1 378 0.0 676
ORI50020036 98.942 378 4 0 1 378 1 378 0.0 676
ORI30020034 98.942 378 4 0 1 378 82 459 0.0 676
ORI10020028 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020012 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020103 98.942 378 3 1 1 378 377 1 0.0 675
ORI94030300 98.677 378 5 0 1 378 1 378 0.0 671
ORI10030084 98.677 378 5 0 1 378 378 1 0.0 671
ORI93030277 90.263 380 33 4 1 378 378 1 0.0 494
ORI92230170 89.276 373 38 2 1 372 1 372 0.0 466
ORI96000399 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520066 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520065 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520068 87.097 372 48 0 1 372 1 372 0.0 422
ORI95030469 86.828 372 49 0 1 372 1 372 0.0 416
ORI95030444 86.828 372 49 0 1 372 1 372 0.0 416
ORI95020132 86.828 372 49 0 1 372 1 372 0.0 416
ORI95030443 86.828 372 49 0 1 372 1 372 0.0 416
ORI95030442 86.828 372 49 0 1 372 1 372 0.0 416
ORI95020131 86.828 372 49 0 1 372 1 372 0.0 416
ORI95020129 86.544 379 49 2 1 378 378 1 0.0 416
ORI95030441 86.508 378 51 0 1 378 396 19 0.0 416
ORI95030436 86.828 372 49 0 1 372 1 372 0.0 416
ORI94030400 86.863 373 47 2 1 372 1 372 0.0 416
ORI92720083 86.828 372 49 0 1 372 1 372 0.0 416
ORI92520073 86.828 372 49 0 1 372 1 372 0.0 416
ORI92520067 86.828 372 49 0 1 372 1 372 0.0 416
ORI92520064 86.828 372 49 0 1 372 1 372 0.0 416
ORI10020021 86.828 372 49 0 1 372 1 372 0.0 416
ORI10020015 86.544 379 49 2 1 378 378 1 0.0 416
ORI10020010 86.544 379 49 2 1 378 378 1 0.0 416
ORI10020009 86.828 372 49 0 1 372 1 372 0.0 416
ORI92520071 86.243 378 52 0 1 378 378 1 0.0 411
ORI92230183 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020023 86.559 372 50 0 1 372 1 372 0.0 411
ORI94030323 86.472 377 43 8 7 378 377 4 0.0 407
ORI96000434 86.387 382 38 11 1 375 381 7 0.0 405
ORI95020130 86.544 379 37 11 1 372 1 372 0.0 405
ORI93020089 86.544 379 37 11 1 372 1 372 0.0 405
ORI92520070 86.29 372 51 0 1 372 1 372 0.0 405
ORI92020049 86.544 379 37 11 1 372 1 372 0.0 405
ORI96000393 86.28 379 38 11 1 372 1 372 0.0 399
ORI92230179 86.364 374 42 8 1 370 377 9 0.0 399
ORI92520072 85.827 381 42 11 1 375 381 7 0.0 394
ORI94030388 86.413 368 37 13 1 361 1 362 0.0 390
ORI93020111 85.564 381 43 11 1 375 381 7 0.0 388
ORI96000432 84.169 379 48 12 1 372 374 1 0.0 357
ORI95020123 81.746 378 59 10 1 372 374 1 0.0 307
ORI93020120 81.481 378 60 9 1 372 374 1 0.0 302
ORI96000429 81.003 379 60 11 1 372 374 1 0.0 291
ORI95020126 80.688 378 63 10 1 372 374 1 0.0 285
ORI96000423 81.164 292 49 5 42 330 331 43 0.0 230
ORI93020094 76.955 243 45 10 89 326 289 53 9.56e-31 128