DoriC

RefSeq

NC_009436.1

Accession number

NC_009436.1

DoriC accession number

ORI90020046

OriC length

373 nt

OriC AT content

0.597855

The location of oriC region

4487049..4487421 nt

Browse in NCBI

OriC map

OriC sequences

mioCATATCACGCGATCAGATGTGGATAAGTCTGGTTAAAAGCTTGGATTAAGCAGTAGTTATCCAACGTATAACTATTGCTTCCTTTTTGAGCTGTGGATAAGGTCACGATCTAACCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACGTTATGATCTTCCTAATGAGATCCCGCTTATCCACAGAAACGTGCGATCCTAATAAGAGATCATAGTAAAACAGATCTCTAAATAAGAAGATCTTCTTTTTAATAGCCAAGATCCCAATACTTTCTTGAAAGACTAAACTTGAGTAGAATCCACGGCCCGGGCTTAAATCCATTTTCAAACCGCTTTACGCAAGGCAGGAAAGCgidA

miocATATCACGCGATCAGATGTGGATAAGTCTGGTTAAAAGCTTGGATTAAGCAGTAGTTATCCAACGTATAACTATTGCTTCCTTTTTGAGCTGTGGATAAGGTCACGATCTAACCCCAGCTTATACTGTCCAGGATCACCGATCATTCACAGCAAACGATCCTTTCTAACGTTATGATCTTCCTAATGAGATCCCGCTTATCCACAGAAACGTGCGATCCTAATAAGAGATCATAGTAAAACAGATCTCTAAATAAGAAGATCTTCTTTTTAATAGCCAAGATCCCAATACTTTCTTGAAAGACTAAACTTGAGTAGAATCCACGGCCCGGGCTTAAATCCATTTTCAAACCGCTTTACGCAAGGCAGGAAAGCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GAGMTSTDRATAAG

Start	P-value		Site
87	1.59e-09	CTTCCTTTTT	GAGCTGTGGATAAG	GTCACGATCT
13	7.75e-08	ATCACGCGAT	CAGATGTGGATAAG	TCTGGTTAAA
243	7.14e-07	TAGTAAAACA	GATCTCTAAATAAG	AAGATCTTCT
213	9.26e-07	ACAGAAACGT	GCGATCCTAATAAG	AGATCATAGT

Motif TCCTTTYT

Start	P-value		Site
79	2.39e-05	AACTATTGCT	TCCTTTTT	GAGCTGTGGA
159	4.31e-05	CAGCAAACGA	TCCTTTCT	AACGTTATGA
263	7.27e-05	TAAGAAGATC	TTCTTTTT	AATAGCCAAG
338	1.34e-04	CGGGCTTAAA	TCCATTTT	CAAACCGCTT
288	1.85e-04	AAGATCCCAA	TACTTTCT	TGAAAGACTA

Motif CKGYCCRGG

Start	P-value		Site
323	4.58e-07	GTAGAATCCA	CGGCCCGGG	CTTAAATCCA
125	7.34e-06	CCAGCTTATA	CTGTCCAGG	ATCACCGATC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI90020046	100.0	373	0	0	1	373	1	373	0.0	689
ORI95020126	86.721	369	42	6	3	367	3	368	0.0	403
ORI93020120	86.721	369	42	6	3	367	3	368	0.0	403
ORI96000429	86.413	368	45	4	3	367	3	368	0.0	398
ORI96000432	86.179	369	44	6	3	367	3	368	0.0	392
ORI95020123	86.216	370	42	8	3	367	3	368	0.0	392
ORI92720079	80.0	355	61	10	17	366	356	7	0.0	254
ORI96000370	75.075	333	58	20	1	321	7	326	7.29e-32	132
ORI94030349	75.075	333	58	20	1	321	7	326	7.29e-32	132
ORI80020043	77.419	217	31	13	114	321	258	51	2.64e-26	113
ORI94030361	77.064	218	30	14	114	321	258	51	1.23e-24	108
ORI96000435	79.141	163	25	8	114	273	271	115	1.59e-23	104
ORI96020517	78.788	165	22	11	114	273	123	279	7.39e-22	99
ORI92220051	97.143	35	1	0	197	231	188	154	3.49e-10	60