RefSeq NC_011993.1
Accession number NC_011993.1
DoriC accession number ORI96000365
OriC length 378 nt
OriC AT content 0.563492
The location of oriC region 3971662..3972039 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCTGCCCTGTGGATAACAAGGATCCGGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACCGTTGTTCTTTGGATAACTACCGTTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTAGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GAAHRABCKGKGWTC

StartP-valueSite
2262.34e-08CATTAACTGTGAATGATCGGTGATCCTGGACCGTA
795.38e-08GTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTA
2944.64e-07CTCAAAAACTGAACAACCGTTGTTCTTTGGATAAC
2486.36e-07ATCCTGGACCGTATAAGCTGGGATCAGAATGAGGG
3641.76e-06ACAGTAGATCGCACGATCTGTATAC

Motif ARGATC

StartP-valueSite
2112.53e-04CAACCTGGAAAGGATCATTAACTGTG
1792.53e-04GTGGATAACAAGGATCCGGCTTTTAA
1532.53e-04ATCTCTTATTAGGATCGCGCTGCCCT
1935.53e-04TCCGGCTTTTAAGATCAACAACCTGG
1095.53e-04TATTAAAAAGAAGATCTATTTATTTA

Motif GCCCKG

StartP-valueSite
411.06e-04ATGGATTGAAGCCCGGGCCGTGGATT
1642.31e-04GGATCGCGCTGCCCTGTGGATAACAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000406 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000365 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000410 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000368 99.471 378 2 0 1 378 1 378 0.0 688
ORI30020033 99.471 378 2 0 1 378 1 378 0.0 688
ORI96000438 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000437 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000436 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000416 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000414 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000413 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000412 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000411 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000409 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000408 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000405 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000404 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000403 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000402 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000400 99.206 378 3 0 1 378 378 1 0.0 682
ORI93020113 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020102 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000367 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020098 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020096 99.206 378 3 0 1 378 378 1 0.0 682
ORI93020093 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020090 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030302 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030301 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030299 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030298 99.206 378 3 0 1 378 1 378 0.0 682
ORI92720080 99.206 378 3 0 1 378 1 378 0.0 682
ORI92720078 99.206 378 3 0 1 378 1 378 0.0 682
ORI92330207 99.206 378 3 0 1 378 378 1 0.0 682
ORI92320059 99.206 378 3 0 1 378 1 378 0.0 682
ORI92330196 99.206 378 3 0 1 378 1 378 0.0 682
ORI92320058 99.206 378 3 0 1 378 378 1 0.0 682
ORI92220053 99.206 378 3 0 1 378 1 378 0.0 682
ORI50020036 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020028 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000364 99.206 378 3 0 1 378 378 1 0.0 682
ORI10020012 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020002 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020001 99.206 378 3 0 1 378 378 1 0.0 682
ORI96000422 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000417 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000415 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000407 98.942 378 4 0 1 378 1 378 0.0 676
ORI95030447 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020099 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720076 98.942 378 4 0 1 378 1 378 0.0 676
ORI92220052 98.942 378 4 0 1 378 1 378 0.0 676
ORI10030083 98.942 378 4 0 1 378 378 1 0.0 676
ORI10030070 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020005 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020004 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020104 98.942 378 3 1 1 378 1 377 0.0 675
ORI92720079 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020103 98.677 378 4 1 1 378 377 1 0.0 669
ORI96000401 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000390 98.413 378 6 0 1 378 1 378 0.0 665
ORI94030303 98.413 378 6 0 1 378 1 378 0.0 665
ORI94030300 98.413 378 6 0 1 378 1 378 0.0 665
ORI10030084 98.413 378 6 0 1 378 378 1 0.0 665
ORI10030036 98.413 378 6 0 1 378 378 1 0.0 665
ORI10030030 98.413 378 6 0 1 378 1 378 0.0 665
ORI30020034 98.148 378 7 0 1 378 82 459 0.0 660
ORI93030277 89.737 380 35 4 1 378 378 1 0.0 483
ORI92230170 88.71 372 42 0 1 372 1 372 0.0 455
ORI96000399 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030469 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030444 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020132 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030443 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030442 86.559 372 50 0 1 372 1 372 0.0 411
ORI95020131 86.559 372 50 0 1 372 1 372 0.0 411
ORI95030441 86.243 378 52 0 1 378 396 19 0.0 411
ORI95030436 86.559 372 50 0 1 372 1 372 0.0 411
ORI92720083 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520073 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520066 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520065 86.559 372 50 0 1 372 1 372 0.0 411
ORI92520064 86.559 372 50 0 1 372 1 372 0.0 411
ORI10020009 86.559 372 50 0 1 372 1 372 0.0 411
ORI94030323 86.472 377 43 8 7 378 377 4 0.0 407
ORI92520071 85.979 378 53 0 1 378 378 1 0.0 405
ORI92520068 86.29 372 51 0 1 372 1 372 0.0 405
ORI92230183 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020023 86.29 372 51 0 1 372 1 372 0.0 405
ORI95020129 85.752 379 52 2 1 378 378 1 0.0 399
ORI94030400 86.059 373 50 2 1 372 1 372 0.0 399
ORI92520070 86.022 372 52 0 1 372 1 372 0.0 399
ORI92520067 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020021 86.022 372 52 0 1 372 1 372 0.0 399
ORI10020015 85.752 379 52 2 1 378 378 1 0.0 399
ORI10020010 85.752 379 52 2 1 378 378 1 0.0 399
ORI96000434 85.864 382 40 11 1 375 381 7 0.0 394
ORI95020130 86.016 379 39 11 1 372 1 372 0.0 394
ORI93020089 86.016 379 39 11 1 372 1 372 0.0 394
ORI92020049 86.016 379 39 11 1 372 1 372 0.0 394
ORI96000393 85.752 379 40 12 1 372 1 372 0.0 388
ORI92230179 85.829 374 44 8 1 370 377 9 0.0 388
ORI92520072 85.302 381 44 11 1 375 381 7 0.0 383
ORI94030388 85.87 368 39 13 1 361 1 362 0.0 379
ORI93020111 85.039 381 45 11 1 375 381 7 0.0 377
ORI96000432 83.641 379 50 12 1 372 374 1 0.0 346
ORI93020120 81.746 378 59 9 1 372 374 1 0.0 307
ORI95020123 81.432 377 62 8 1 372 374 1 0.0 302
ORI96000429 80.902 377 64 8 1 372 374 1 0.0 291
ORI95020126 80.688 378 63 10 1 372 374 1 0.0 285
ORI96000423 80.822 292 50 5 42 330 331 43 0.0 224
ORI93020094 77.731 238 42 10 89 321 289 58 5.72e-33 135