RefSeq NC_006905.1
Accession number NC_006905.1
DoriC accession number ORI10020023
OriC length 378 nt
OriC AT content 0.555556
The location of oriC region 4018843..4019220 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidaGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioc
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
gidAGGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTCAACTTTAGCCGATGGAGAAAGCCCCGGGATCCGGGCTATTAAAAAGAAGATCTTTTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACCCGGATCCTGTAATAAAGATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGTGATCGTGGCCCGTATAAGCTGGGATCAAAACGGGTACTTATACATAACTCAAAAAGTGAACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCTTTCCACCAGATTTATCCACAATGGATCGCACGATCTTTACACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TKVHTHGGATMACKVSCKGTK

StartP-valueSite
3061.72e-09ACAACGGTTATTCTTTGGATAACTACCGGTTGATCCAAGCT
2062.95e-09ATCAATGCGTTGGAAAGGATCACTAGCTGTGAATGATCGGT
71.79e-08GGTAATTGCCTCGCATAACGCGGTGTGAAAATGGATT
321.95e-08GGTGTGAAAATGGATTGAAGCCCGGGCGGTGGATTCTACTC
1486.29e-08TTGTGATCTCTTATTAGGATCGCGCCAGGCTGTGGATAACC

Motif CBGGGATC

StartP-valueSite
869.15e-06GGAGAAAGCCCCGGGATCCGGGCTATTA
1772.77e-05CTGTGGATAACCCGGATCCTGTAATAAA
2553.99e-05CCCGTATAAGCTGGGATCAAAACGGGTA
2338.19e-05TGTGAATGATCGGTGATCGTGGCCCGTA

Motif AGATCTDTNC

StartP-valueSite
1267.49e-06TTTTATTTAGAGATCTGTTCTATTGTGATC
1102.73e-05ATTAAAAAGAAGATCTTTTTATTTAGAGAT
3673.10e-05ATGGATCGCACGATCTTTACAC
1943.44e-05CCTGTAATAAAGATCAATGCGTTGGAAAGG
3444.25e-05GCTTTCCACCAGATTTATCCACAATGGATC
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI10020023 100.0 378 0 0 1 378 1 378 0.0 699
ORI95030441 99.735 378 1 0 1 378 396 19 0.0 693
ORI92720083 99.735 378 1 0 1 378 1 378 0.0 693
ORI92520073 99.735 378 1 0 1 378 1 378 0.0 693
ORI92520064 99.735 378 1 0 1 378 1 378 0.0 693
ORI95020132 99.471 378 2 0 1 378 1 378 0.0 688
ORI92520071 99.471 378 2 0 1 378 378 1 0.0 688
ORI92520068 99.471 378 2 0 1 378 1 378 0.0 688
ORI92230183 99.471 378 2 0 1 378 1 378 0.0 688
ORI10020009 99.471 378 2 0 1 378 1 378 0.0 688
ORI95030469 99.469 377 2 0 1 377 1 377 0.0 686
ORI95030444 99.469 377 2 0 1 377 1 377 0.0 686
ORI95030443 99.469 377 2 0 1 377 1 377 0.0 686
ORI95030442 99.469 377 2 0 1 377 1 377 0.0 686
ORI95020131 99.469 377 2 0 1 377 1 377 0.0 686
ORI95030436 99.469 377 2 0 1 377 1 377 0.0 686
ORI96000399 99.206 378 3 0 1 378 1 378 0.0 682
ORI92520070 99.206 378 3 0 1 378 1 378 0.0 682
ORI92520067 99.206 378 3 0 1 378 1 378 0.0 682
ORI92520066 99.206 378 3 0 1 378 1 378 0.0 682
ORI92520065 99.206 378 3 0 1 378 1 378 0.0 682
ORI10020021 99.206 378 3 0 1 378 1 378 0.0 682
ORI95020129 98.413 378 6 0 1 378 378 1 0.0 665
ORI10020015 98.413 378 6 0 1 378 378 1 0.0 665
ORI10020010 98.413 378 6 0 1 378 378 1 0.0 665
ORI94030400 93.915 378 23 0 1 378 1 378 0.0 571
ORI92230179 92.593 378 27 1 1 378 377 1 0.0 542
ORI93030277 91.293 379 31 2 1 378 378 1 0.0 516
ORI92230170 87.766 376 38 5 1 372 1 372 0.0 433
ORI96000401 87.097 372 48 0 1 372 1 372 0.0 422
ORI94030303 87.097 372 48 0 1 372 1 372 0.0 422
ORI96000414 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000411 86.559 372 50 0 1 372 1 372 0.0 411
ORI93020113 86.559 372 50 0 1 372 1 372 0.0 411
ORI94030302 86.559 372 50 0 1 372 1 372 0.0 411
ORI92720080 86.559 372 50 0 1 372 1 372 0.0 411
ORI92320059 86.559 372 50 0 1 372 1 372 0.0 411
ORI96000422 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000408 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000406 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000405 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000400 85.979 378 53 0 1 378 378 1 0.0 405
ORI96000390 86.29 372 51 0 1 372 1 372 0.0 405
ORI93020099 86.29 372 51 0 1 372 1 372 0.0 405
ORI93020090 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000365 86.29 372 51 0 1 372 1 372 0.0 405
ORI92720076 86.29 372 51 0 1 372 1 372 0.0 405
ORI92330196 86.29 372 51 0 1 372 1 372 0.0 405
ORI92220052 86.29 372 51 0 1 372 1 372 0.0 405
ORI96000364 85.979 378 53 0 1 378 378 1 0.0 405
ORI10030070 85.979 378 53 0 1 378 378 1 0.0 405
ORI10030036 85.979 378 53 0 1 378 378 1 0.0 405
ORI10030030 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020005 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020004 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020002 86.29 372 51 0 1 372 1 372 0.0 405
ORI10020001 85.979 378 53 0 1 378 378 1 0.0 405
ORI96000438 85.714 378 54 0 1 378 378 1 0.0 399
ORI96000437 85.714 378 54 0 1 378 378 1 0.0 399
ORI96000436 85.714 378 54 0 1 378 378 1 0.0 399
ORI96000416 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000409 86.022 372 52 0 1 372 1 372 0.0 399
ORI96000368 86.022 372 52 0 1 372 1 372 0.0 399
ORI93020102 85.714 378 54 0 1 378 378 1 0.0 399
ORI96000367 86.022 372 52 0 1 372 1 372 0.0 399
ORI93020098 86.022 372 52 0 1 372 1 372 0.0 399
ORI93020096 85.714 378 54 0 1 378 378 1 0.0 399
ORI93020093 86.022 372 52 0 1 372 1 372 0.0 399
ORI94030301 86.022 372 52 0 1 372 1 372 0.0 399
ORI94030298 86.022 372 52 0 1 372 1 372 0.0 399
ORI92720079 86.022 372 52 0 1 372 1 372 0.0 399
ORI92720078 86.022 372 52 0 1 372 1 372 0.0 399
ORI92330207 85.714 378 54 0 1 378 378 1 0.0 399
ORI92320058 85.714 378 54 0 1 378 378 1 0.0 399
ORI92220053 86.022 372 52 0 1 372 1 372 0.0 399
ORI30020034 86.022 372 52 0 1 372 82 453 0.0 399
ORI10030083 85.714 378 54 0 1 378 378 1 0.0 399
ORI93020104 86.022 372 51 1 1 372 1 371 0.0 398
ORI96000417 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000415 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000410 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000407 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000404 85.753 372 53 0 1 372 1 372 0.0 394
ORI96000402 85.753 372 53 0 1 372 1 372 0.0 394
ORI95030447 85.45 378 55 0 1 378 378 1 0.0 394
ORI94030299 85.753 372 53 0 1 372 1 372 0.0 394
ORI50020036 85.753 372 53 0 1 372 1 372 0.0 394
ORI30020033 85.753 372 53 0 1 372 1 372 0.0 394
ORI10020028 85.753 372 53 0 1 372 1 372 0.0 394
ORI93020103 85.488 379 52 3 1 378 377 1 0.0 392
ORI96000413 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000412 85.484 372 54 0 1 372 1 372 0.0 388
ORI96000403 85.484 372 54 0 1 372 1 372 0.0 388
ORI10020012 85.484 372 54 0 1 372 1 372 0.0 388
ORI94030300 85.215 372 55 0 1 372 1 372 0.0 383
ORI10030084 84.921 378 57 0 1 378 378 1 0.0 383
ORI94030323 84.169 379 48 9 7 378 377 4 0.0 357
ORI96000432 84.14 372 48 11 7 372 367 1 0.0 350
ORI96000434 82.979 376 53 7 7 377 374 5 0.0 329
ORI96000393 83.024 377 51 9 7 377 8 377 0.0 329
ORI95020130 82.979 376 53 7 7 377 8 377 0.0 329
ORI93020089 82.979 376 53 7 7 377 8 377 0.0 329
ORI92020049 82.979 376 53 7 7 377 8 377 0.0 329
ORI93020120 83.019 371 54 8 7 372 367 1 0.0 327
ORI94030388 82.519 389 46 18 1 377 1 379 0.0 322
ORI93020111 82.105 380 62 5 1 377 381 5 0.0 320
ORI92520072 82.105 380 62 5 1 377 381 5 0.0 320
ORI95020126 82.258 372 55 11 7 372 367 1 0.0 311
ORI96000429 81.989 372 56 10 7 372 367 1 0.0 305
ORI95020123 81.671 371 59 9 7 372 367 1 0.0 300
ORI96000423 84.192 291 42 4 42 330 331 43 0.0 279
ORI94030317 76.955 243 46 9 89 326 90 327 2.66e-31 130