RefSeq NC_017626.1
Accession number NC_017626.1
DoriC accession number ORI96000401
OriC length 378 nt
OriC AT content 0.566138
The location of oriC region 4391194..4391571 nt
Browse in NCBI
OriC map
OriC sequences
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidaGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioc
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
gidAGGTGATTGCCTCGCATAACGCGGTATGAAAATGGATTGAAGCCCGGGCCGTGGATTCTACTCAACTTTGTCGGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCTTATTAGGATCGCACTACCCTGTGGATAACAAGGATCCAGCTTTTAAGATCAACAACCTGGAAAGGATCATTAACTGTGAATGATCGGTGATCCTGGACCGTATAAGCTGGGATCAGAATGAGGGGTTATACACAACTCAAAAACTGAACAACGGTTGTTCTTTGGATAACTACCGGTTGATCCAAGCTTCCTGACAGAGTTATCCACAGTGGATCGCACGATCTGTATACmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CCTGGR

StartP-valueSite
931.43e-04GACCTGGGATCCTGGGTATTAAAAAG
851.43e-04TTGAGAAAGACCTGGGATCCTGGGTA
2403.17e-04GATCGGTGATCCTGGACCGTATAAGC
2043.17e-04AGATCAACAACCTGGAAAGGATCATT
424.19e-04TGGATTGAAGCCCGGGCCGTGGATTC

Motif CNGTGGAT

StartP-valueSite
1671.62e-05TCGCACTACCCTGTGGATAACAAGGATC
482.76e-05GAAGCCCGGGCCGTGGATTCTACTCAAC
3555.83e-05GAGTTATCCACAGTGGATCGCACGATCT
3089.60e-05AACGGTTGTTCTTTGGATAACTACCGGT
3221.55e-04GGATAACTACCGGTTGATCCAAGCTTCC

Motif ARGATC

StartP-valueSite
2112.55e-04CAACCTGGAAAGGATCATTAACTGTG
1792.55e-04GTGGATAACAAGGATCCAGCTTTTAA
1532.55e-04ATCTCTTATTAGGATCGCACTACCCT
1935.64e-04TCCAGCTTTTAAGATCAACAACCTGG
1095.64e-04TATTAAAAAGAAGATCTATTTATTTA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96000401 100.0 378 0 0 1 378 1 378 0.0 699
ORI94030303 100.0 378 0 0 1 378 1 378 0.0 699
ORI96000414 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000411 99.206 378 3 0 1 378 1 378 0.0 682
ORI93020113 99.206 378 3 0 1 378 1 378 0.0 682
ORI94030302 99.206 378 3 0 1 378 1 378 0.0 682
ORI92720080 99.206 378 3 0 1 378 1 378 0.0 682
ORI92320059 99.206 378 3 0 1 378 1 378 0.0 682
ORI96000422 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000408 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000405 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000400 98.942 378 4 0 1 378 378 1 0.0 676
ORI93020099 98.942 378 4 0 1 378 1 378 0.0 676
ORI93020090 98.942 378 4 0 1 378 1 378 0.0 676
ORI92720076 98.942 378 4 0 1 378 1 378 0.0 676
ORI92330196 98.942 378 4 0 1 378 1 378 0.0 676
ORI96000364 98.942 378 4 0 1 378 378 1 0.0 676
ORI10030070 98.942 378 4 0 1 378 378 1 0.0 676
ORI10020005 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020004 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020002 98.942 378 4 0 1 378 1 378 0.0 676
ORI10020001 98.942 378 4 0 1 378 378 1 0.0 676
ORI96000438 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000437 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000436 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000416 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000409 98.677 378 5 0 1 378 1 378 0.0 671
ORI96000368 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020102 98.677 378 5 0 1 378 378 1 0.0 671
ORI96000367 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020098 98.677 378 5 0 1 378 1 378 0.0 671
ORI93020096 98.677 378 5 0 1 378 378 1 0.0 671
ORI93020093 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030301 98.677 378 5 0 1 378 1 378 0.0 671
ORI94030298 98.677 378 5 0 1 378 1 378 0.0 671
ORI92720079 98.677 378 5 0 1 378 1 378 0.0 671
ORI92720078 98.677 378 5 0 1 378 1 378 0.0 671
ORI92330207 98.677 378 5 0 1 378 378 1 0.0 671
ORI92320058 98.677 378 5 0 1 378 378 1 0.0 671
ORI92220053 98.677 378 5 0 1 378 1 378 0.0 671
ORI10030083 98.677 378 5 0 1 378 378 1 0.0 671
ORI93020104 98.677 378 4 1 1 378 1 377 0.0 669
ORI96000417 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000415 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000410 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000407 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000406 98.413 378 6 0 1 378 1 378 0.0 665
ORI96000390 98.413 378 6 0 1 378 1 378 0.0 665
ORI95030447 98.413 378 6 0 1 378 378 1 0.0 665
ORI96000365 98.413 378 6 0 1 378 1 378 0.0 665
ORI92220052 98.413 378 6 0 1 378 1 378 0.0 665
ORI30020033 98.413 378 6 0 1 378 1 378 0.0 665
ORI10030036 98.413 378 6 0 1 378 378 1 0.0 665
ORI10030030 98.413 378 6 0 1 378 1 378 0.0 665
ORI93020103 98.413 378 5 1 1 378 377 1 0.0 664
ORI96000413 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000412 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000404 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000403 98.148 378 7 0 1 378 1 378 0.0 660
ORI96000402 98.148 378 7 0 1 378 1 378 0.0 660
ORI94030299 98.148 378 7 0 1 378 1 378 0.0 660
ORI50020036 98.148 378 7 0 1 378 1 378 0.0 660
ORI30020034 98.148 378 7 0 1 378 82 459 0.0 660
ORI10020028 98.148 378 7 0 1 378 1 378 0.0 660
ORI10020012 98.148 378 7 0 1 378 1 378 0.0 660
ORI94030300 97.884 378 8 0 1 378 1 378 0.0 654
ORI10030084 97.884 378 8 0 1 378 378 1 0.0 654
ORI93030277 90.263 380 33 4 1 378 378 1 0.0 494
ORI92230170 89.008 373 39 2 1 372 1 372 0.0 460
ORI96000399 87.903 372 45 0 1 372 1 372 0.0 438
ORI92520066 87.903 372 45 0 1 372 1 372 0.0 438
ORI92520065 87.903 372 45 0 1 372 1 372 0.0 438
ORI92520068 87.634 372 46 0 1 372 1 372 0.0 433
ORI95030469 87.366 372 47 0 1 372 1 372 0.0 427
ORI95030444 87.366 372 47 0 1 372 1 372 0.0 427
ORI95020132 87.366 372 47 0 1 372 1 372 0.0 427
ORI95030443 87.366 372 47 0 1 372 1 372 0.0 427
ORI95030442 87.366 372 47 0 1 372 1 372 0.0 427
ORI95020131 87.366 372 47 0 1 372 1 372 0.0 427
ORI95030441 87.037 378 49 0 1 378 396 19 0.0 427
ORI95030436 87.366 372 47 0 1 372 1 372 0.0 427
ORI92720083 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520073 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520067 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520064 87.366 372 47 0 1 372 1 372 0.0 427
ORI10020021 87.366 372 47 0 1 372 1 372 0.0 427
ORI10020009 87.366 372 47 0 1 372 1 372 0.0 427
ORI92520071 86.772 378 50 0 1 378 378 1 0.0 422
ORI92230183 87.097 372 48 0 1 372 1 372 0.0 422
ORI10020023 87.097 372 48 0 1 372 1 372 0.0 422
ORI95020129 86.544 379 49 2 1 378 378 1 0.0 416
ORI92520070 86.828 372 49 0 1 372 1 372 0.0 416
ORI10020015 86.544 379 49 2 1 378 378 1 0.0 416
ORI10020010 86.544 379 49 2 1 378 378 1 0.0 416
ORI94030400 86.595 373 48 2 1 372 1 372 0.0 411
ORI94030323 86.472 377 43 8 7 378 377 4 0.0 407
ORI96000434 86.162 383 37 13 1 375 381 7 0.0 399
ORI95020130 86.316 380 36 13 1 372 1 372 0.0 399
ORI93020089 86.316 380 36 13 1 372 1 372 0.0 399
ORI92230179 86.364 374 42 8 1 370 377 9 0.0 399
ORI92020049 86.316 380 36 13 1 372 1 372 0.0 399
ORI96000393 86.053 380 37 13 1 372 1 372 0.0 394
ORI94030388 86.813 364 35 13 1 357 1 358 0.0 394
ORI92520072 85.827 381 42 11 1 375 381 7 0.0 394
ORI93020111 85.564 381 43 11 1 375 381 7 0.0 388
ORI96000432 84.169 379 48 12 1 372 374 1 0.0 357
ORI95020123 82.058 379 56 12 1 372 374 1 0.0 313
ORI93020120 82.105 380 54 13 1 372 374 1 0.0 313
ORI96000429 81.579 380 56 13 1 372 374 1 0.0 302
ORI95020126 81.266 379 59 12 1 372 374 1 0.0 296
ORI96000423 80.479 292 51 5 42 330 331 43 0.0 219
ORI93020094 76.955 243 45 10 89 326 289 53 9.56e-31 128