DoriC

RefSeq

NC_017564.1

Accession number

NC_017564.1

DoriC accession number

ORI96020517

OriC length

311 nt

OriC AT content

0.636656

The location of oriC region

3044227..3044537 nt

Browse in NCBI

OriC map

OriC sequences

mioCTTTGCTTAAAGATCATGCGAACGAATGTGGATAAGTAAGCTTGAAAGCAGGGTATAAGCAGTACATATCCACATAACAACCTTAGTGACTTAAAGCACCTGTGTATAACATGCTATTTAGATCCCAGCTTATACGCAATAGGATCACCGATCATTCACAGCAAACGATCCTCCTTAATTGCATGATCTTAAATGTGAATAATCACTTATCCACAGAGGATCATGATCCTAATAAGGGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTAAGAGCGATCCTAAGCTGCTTGGTCGATCGT-

miocTTTGCTTAAAGATCATGCGAACGAATGTGGATAAGTAAGCTTGAAAGCAGGGTATAAGCAGTACATATCCACATAACAACCTTAGTGACTTAAAGCACCTGTGTATAACATGCTATTTAGATCCCAGCTTATACGCAATAGGATCACCGATCATTCACAGCAAACGATCCTCCTTAATTGCATGATCTTAAATGTGAATAATCACTTATCCACAGAGGATCATGATCCTAATAAGGGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTAAGAGCGATCCTAAGCTGCTTGGTCGATCGT-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GATCYT

Start	P-value		Site
287	1.80e-04	AATTAAGAGC	GATCCT	AAGCTGCTTG
224	1.80e-04	AGAGGATCAT	GATCCT	AATAAGGGAT
166	1.80e-04	CACAGCAAAC	GATCCT	CCTTAATTGC
266	4.52e-04	TAAATAAAAA	GATCTT	CTTTTAATTA
250	4.52e-04	CTAATAAAGA	GATCTT	TAAATAAAAA

Motif GTGDATAA

Start	P-value		Site
101	3.05e-05	TAAAGCACCT	GTGTATAA	CATGCTATTT
27	4.91e-05	GCGAACGAAT	GTGGATAA	GTAAGCTTGA
50	6.77e-05	CTTGAAAGCA	GGGTATAA	GCAGTACATA
194	1.16e-04	GATCTTAAAT	GTGAATAA	TCACTTATCC

Motif GATCAT

Start	P-value		Site
218	3.31e-04	ATCCACAGAG	GATCAT	GATCCTAATA
149	3.31e-04	TAGGATCACC	GATCAT	TCACAGCAAA
11	3.31e-04	TTTGCTTAAA	GATCAT	GCGAACGAAT
306	4.97e-04	CTGCTTGGTC	GATCGT
142	7.17e-04	TACGCAATAG	GATCAC	CGATCATTCA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96020517	100.0	311	0	0	1	311	1	311	0.0	575
ORI94030361	99.678	311	1	0	1	311	380	70	0.0	569
ORI80020043	96.463	311	11	0	1	311	380	70	0.0	514
ORI92020050	89.32	309	31	2	4	311	377	70	0.0	387
ORI92320057	88.782	312	33	2	1	311	1	311	0.0	381
ORI10020019	88.673	309	33	2	4	311	377	70	0.0	375
ORI96020516	88.35	309	34	2	4	311	308	1	0.0	370
ORI96000376	88.141	312	35	2	1	311	1	311	0.0	370
ORI96000375	88.35	309	34	2	4	311	377	70	0.0	370
ORI96000374	88.35	309	34	2	4	311	377	70	0.0	370
ORI93020117	88.35	309	34	2	4	311	377	70	0.0	370
ORI92520061	88.141	312	35	2	1	311	1	311	0.0	370
ORI90020045	88.141	312	35	2	1	311	1	311	0.0	370
ORI20020031	88.35	309	34	2	4	311	377	70	0.0	370
ORI20020030	88.35	309	34	2	4	311	377	70	0.0	370
ORI92220056	87.702	309	36	2	4	311	377	70	0.0	359
ORI10020018	88.435	294	32	2	4	296	296	4	0.0	353
ORI10030027	88.435	294	32	2	4	296	296	4	0.0	353
ORI10020008	87.419	310	36	3	4	311	378	70	0.0	353
ORI92220054	84.984	313	41	6	1	310	1	310	0.0	313
ORI94030310	81.298	262	39	9	26	282	350	94	0.0	204
ORI93020097	83.256	215	29	6	99	310	280	70	0.0	191
ORI93030282	79.705	271	43	10	26	290	349	85	0.0	185
ORI10030033	78.966	290	48	13	23	306	372	90	0.0	185
ORI96000435	78.547	289	51	11	23	306	371	89	0.0	180
ORI93020095	78.472	288	53	9	23	306	20	302	0.0	180
ORI93020120	77.338	278	50	11	10	279	1	273	4.61e-38	152
ORI96000432	81.481	189	24	10	98	279	89	273	7.72e-36	145
ORI96000429	80.952	189	25	9	98	279	89	273	3.59e-34	139
ORI95020126	80.952	189	25	10	98	279	89	273	3.59e-34	139
ORI95020123	80.952	189	25	9	98	279	89	273	3.59e-34	139
ORI96000387	77.512	209	42	5	66	271	64	270	1.3e-28	121
ORI93020109	77.512	209	42	5	66	271	64	270	1.3e-28	121
ORI93020091	79.33	179	32	5	96	271	94	270	1.3e-28	121
ORI96000423	78.652	178	30	8	120	292	111	285	7.83e-26	111
ORI93020110	74.394	289	59	14	26	306	23	304	2.82e-25	110
ORI93020094	74.803	254	57	7	26	275	23	273	1.01e-24	108
ORI94030317	74.609	256	55	10	26	275	357	106	1.31e-23	104
ORI93020092	77.436	195	29	12	120	306	116	303	4.71e-23	102
ORI90020046	78.659	164	24	9	123	279	114	273	6.1e-22	99