RefSeq NC_013850.1
Accession number NC_013850.1
DoriC accession number ORI93020111
OriC length 381 nt
OriC AT content 0.582677
The location of oriC region 5426903..5427283 nt
Browse in NCBI
OriC map
OriC sequences
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
miocGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgida
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
mioCGAATTGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGCTTGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAGATAGTGATCCTTCTTAAACTTTTGATCTTACATCGTGGATCCGACTTATCCACAAAGAGAGTCGATCCTAATAAGAGATCACAATAGAACAGATCTCTATATAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCAAAAGACCAAAGCCGAGTAGAATCCACGGCCCGGGCTTCAATCCATTTTCAAACCGCGTTATGCGAGGCAGATCACCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GBTTDTWVTNCTVWGGATMACCGW

StartP-valueSite
892.81e-10ACCGTCGTATGGTTTTTGTGCTGTGTATAACCCTTCATTTTGAT
603.28e-09TGGATCAACCGGTAGTTATCCAAAGAATAACCGTCGTATGGTTT
1275.52e-09TTTGATCCCAGCTTATACGGACCAGGATCACCGATCATTCACAG
157.04e-09TGTAAAGATCGTCGGATCTTCTGTGGATAACCATGCTTAAAAGC
2729.62e-09TAAAGATCTTCTTTTTAATACTCAGGATCCCGGAGTCTTTCTCA

Motif AAAGATC

StartP-valueSite
2639.48e-05ATCTCTATATAAAGATCTTCTTTTTAA
89.48e-05GAATTGTAAAGATCGTCGGATCTT
2341.55e-04GATCCTAATAAGAGATCACAATAGAAC
2492.29e-04TCACAATAGAACAGATCTCTATATAAA
3063.05e-04GTCTTTCTCAAAAGACCAAAGCCGAGT

Motif TBGATC

StartP-valueSite
1961.96e-04TCTTACATCGTGGATCCGACTTATCC
501.96e-04CTTAAAAGCTTGGATCAACCGGTAGT
1824.95e-04TCTTAAACTTTTGATCTTACATCGTG
1184.95e-04ACCCTTCATTTTGATCCCAGCTTATA
2227.36e-04ACAAAGAGAGTCGATCCTAATAAGAG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI93020111 100.0 381 0 0 1 381 1 381 0.0 704
ORI92520072 99.738 381 1 0 1 381 1 381 0.0 699
ORI96000434 96.063 381 15 0 1 381 1 381 0.0 621
ORI95020130 96.063 381 15 0 1 381 381 1 0.0 621
ORI93020089 96.063 381 15 0 1 381 381 1 0.0 621
ORI92020049 96.063 381 15 0 1 381 381 1 0.0 621
ORI96000393 95.801 381 16 0 1 381 381 1 0.0 616
ORI94030388 91.842 380 29 2 4 381 380 1 0.0 529
ORI94030323 86.234 385 46 6 1 380 1 383 0.0 411
ORI96000414 85.714 378 42 11 10 381 372 1 0.0 388
ORI96000401 85.714 378 42 11 10 381 372 1 0.0 388
ORI93020113 85.714 378 42 11 10 381 372 1 0.0 388
ORI94030303 85.714 378 42 11 10 381 372 1 0.0 388
ORI92720080 85.714 378 42 11 10 381 372 1 0.0 388
ORI10030083 85.602 382 41 13 7 381 4 378 0.0 388
ORI96000422 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000408 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000405 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000400 85.302 381 44 11 7 381 4 378 0.0 383
ORI96000390 85.45 378 43 11 10 381 372 1 0.0 383
ORI93020099 85.45 378 43 11 10 381 372 1 0.0 383
ORI93020090 85.45 378 43 11 10 381 372 1 0.0 383
ORI92720076 85.45 378 43 11 10 381 372 1 0.0 383
ORI92330196 85.45 378 43 11 10 381 372 1 0.0 383
ORI92220052 85.45 378 43 11 10 381 372 1 0.0 383
ORI96000364 85.302 381 44 11 7 381 4 378 0.0 383
ORI10030036 85.302 381 44 11 7 381 4 378 0.0 383
ORI10030030 85.45 378 43 11 10 381 372 1 0.0 383
ORI10020005 85.45 378 43 11 10 381 372 1 0.0 383
ORI10020004 85.45 378 43 11 10 381 372 1 0.0 383
ORI10020002 85.45 378 43 11 10 381 372 1 0.0 383
ORI10020001 85.302 381 44 11 7 381 4 378 0.0 383
ORI93030277 85.0 380 51 5 5 381 2 378 0.0 381
ORI93020104 85.45 378 42 11 10 381 371 1 0.0 381
ORI96000438 85.039 381 45 11 7 381 4 378 0.0 377
ORI96000437 85.039 381 45 11 7 381 4 378 0.0 377
ORI96000436 85.039 381 45 11 7 381 4 378 0.0 377
ORI96000416 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000411 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000409 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000406 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000368 85.185 378 44 11 10 381 372 1 0.0 377
ORI93020102 85.039 381 45 11 7 381 4 378 0.0 377
ORI96000367 85.185 378 44 11 10 381 372 1 0.0 377
ORI93020098 85.185 378 44 11 10 381 372 1 0.0 377
ORI93020096 85.039 381 45 11 7 381 4 378 0.0 377
ORI93020093 85.185 378 44 11 10 381 372 1 0.0 377
ORI96000365 85.185 378 44 11 10 381 372 1 0.0 377
ORI94030302 85.185 378 44 11 10 381 372 1 0.0 377
ORI94030301 85.185 378 44 11 10 381 372 1 0.0 377
ORI94030298 85.185 378 44 11 10 381 372 1 0.0 377
ORI92720078 85.185 378 44 11 10 381 372 1 0.0 377
ORI92330207 85.039 381 45 11 7 381 4 378 0.0 377
ORI92320059 85.185 378 44 11 10 381 372 1 0.0 377
ORI92320058 85.039 381 45 11 7 381 4 378 0.0 377
ORI92220053 85.185 378 44 11 10 381 372 1 0.0 377
ORI30020034 85.185 378 44 11 10 381 453 82 0.0 377
ORI10030070 85.039 381 45 11 7 381 4 378 0.0 377
ORI93020103 85.039 381 44 11 7 381 4 377 0.0 375
ORI96000417 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000415 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000410 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000407 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000404 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000402 84.921 378 45 11 10 381 372 1 0.0 372
ORI95030447 84.777 381 46 11 7 381 4 378 0.0 372
ORI94030299 84.921 378 45 11 10 381 372 1 0.0 372
ORI50020036 84.921 378 45 11 10 381 372 1 0.0 372
ORI30020033 84.921 378 45 11 10 381 372 1 0.0 372
ORI10020028 84.921 378 45 11 10 381 372 1 0.0 372
ORI96000413 84.656 378 46 11 10 381 372 1 0.0 366
ORI96000412 84.656 378 46 11 10 381 372 1 0.0 366
ORI96000403 84.656 378 46 11 10 381 372 1 0.0 366
ORI92720079 84.656 378 46 11 10 381 372 1 0.0 366
ORI10020012 84.656 378 46 11 10 381 372 1 0.0 366
ORI94030300 84.392 378 47 11 10 381 372 1 0.0 361
ORI10030084 84.252 381 48 11 7 381 4 378 0.0 361
ORI95020129 83.246 382 54 9 5 381 2 378 0.0 342
ORI10020015 83.246 382 54 9 5 381 2 378 0.0 342
ORI10020010 83.246 382 54 9 5 381 2 378 0.0 342
ORI96000399 82.984 382 55 9 5 381 377 1 0.0 337
ORI92520065 82.984 382 55 9 5 381 377 1 0.0 337
ORI95030469 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030444 82.677 381 58 7 5 381 377 1 0.0 331
ORI95020132 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030443 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030442 82.677 381 58 7 5 381 377 1 0.0 331
ORI95020131 82.677 381 58 7 5 381 377 1 0.0 331
ORI95030436 82.677 381 58 7 5 381 377 1 0.0 331
ORI94030400 82.857 385 50 15 5 381 377 1 0.0 331
ORI92520068 82.723 382 56 9 5 381 377 1 0.0 331
ORI92520066 82.723 382 56 9 5 381 377 1 0.0 331
ORI10020009 82.677 381 58 7 5 381 377 1 0.0 331
ORI96000432 82.804 378 55 9 10 381 1 374 0.0 329
ORI95030441 82.292 384 60 7 2 381 17 396 0.0 326
ORI92720083 82.415 381 59 7 5 381 377 1 0.0 326
ORI92520073 82.415 381 59 7 5 381 377 1 0.0 326
ORI92520067 82.461 382 57 9 5 381 377 1 0.0 326
ORI92520064 82.415 381 59 7 5 381 377 1 0.0 326
ORI92230183 82.461 382 57 9 5 381 377 1 0.0 326
ORI10020021 82.461 382 57 9 5 381 377 1 0.0 326
ORI92230179 82.415 381 58 8 5 381 2 377 0.0 324
ORI92520071 82.152 381 60 7 5 381 2 378 0.0 320
ORI10020023 82.152 381 60 7 5 381 377 1 0.0 320
ORI92520070 81.89 381 61 7 5 381 377 1 0.0 315
ORI96000429 82.597 362 53 9 26 381 17 374 0.0 311
ORI95020126 82.645 363 51 11 26 381 17 374 0.0 311
ORI95020123 82.597 362 53 9 26 381 17 374 0.0 311
ORI93020120 82.548 361 55 7 26 381 17 374 0.0 311
ORI96000423 79.257 323 56 9 23 339 14 331 0.0 215