DoriC

RefSeq

NZ_CP024574

DoriC accession number

pORI00001055

OriC length

388 nt

OriC AT content

0.5206

The location of oriC region

6761..7148 nt

Browse in NCBI

OriC map

OriC sequences

TTTAGAGGAGTTAGTCTTGAAGTTATGCGCCAGTTAAGGCTAAACTGAAAGAACAAGTTTTGGTGACTGCGCTCCTCTAAGCCAGTTACCTTGGTTCATAGAGCCGCAAACTCTAGAACCTTAAAAAAAACCGCCCCGCAAAGGCGGTTTTTTTTTTTCTCGTCTCAAGGTTAAGCTCTGTATAACATCAGAGTCAACAGATCTTCATTTCGAGTCTGGTGGTACTGGTGGTACTGGTGGTACTGGCGGTACTGGCGGTACTGGCGGTACTGGCGGTACGGGCGGTACGGGCGGTACGGGCGGTACGGGCGGTACGGGCTGGGAAGATAAATTAATAGTCGAATCAGTTCTCCCGACATGATTGCCAGAATCAATATTTGTGTTAGTT

AT-rich region

The information of repeat sequences

Motif ACKGGCGGTACKGGC

Start	P-value		Site
260	9.71e-10	TACTGGCGGT	ACTGGCGGTACTGGC	GGTACGGGCG
242	9.71e-10	TACTGGTGGT	ACTGGCGGTACTGGC	GGTACTGGCG
305	3.93e-09	TACGGGCGGT	ACGGGCGGTACGGGC	TGGGAAGATA
278	3.93e-09	TACTGGCGGT	ACGGGCGGTACGGGC	GGTACGGGCG
224	1.68e-08	GTCTGGTGGT	ACTGGTGGTACTGGT	GGTACTGGCG

Motif MGMNCCKCAAA

Start	P-value		Site
132	1.38e-07	TAAAAAAAAC	CGCCCCGCAAA	GGCGGTTTTT
100	3.41e-06	CTTGGTTCAT	AGAGCCGCAAA	CTCTAGAACC
70	5.49e-06	TTGGTGACTG	CGCTCCTCTAA	GCCAGTTACC
115	1.13e-05	CGCAAACTCT	AGAACCTTAAA	AAAAACCGCC

Motif CAGARTCAAYA

Start	P-value		Site
189	2.67e-07	TGTATAACAT	CAGAGTCAACA	GATCTTCATT
366	4.40e-07	ACATGATTGC	CAGAATCAATA	TTTGTGTTAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00001055	100.0	388	0	0	1	388	1	388	0.0	717
pORI00000307	86.452	155	15	6	1	153	503	353	5.80978e-42	165
pORI00000116	86.452	155	15	6	1	153	503	353	5.80978e-42	165
pORI00000098	86.452	155	15	6	1	153	503	353	5.80978e-42	165
pORI00000095	86.452	155	15	6	1	153	503	353	5.80978e-42	165
pORI00000244	84.375	160	21	4	1	159	444	288	1.26e-38	154
pORI00000315	85.065	154	18	5	1	153	968	819	4.52e-38	152