DoriC

RefSeq

NC_010259

DoriC accession number

pORI00000314

OriC length

2643 nt

OriC AT content

0.5501

The location of oriC region

6349..794 nt

Browse in NCBI

OriC map

OriC sequences

ACTTTTTGTAGCCCTTCATGGGGGAAGATCTTCTTGAGATCCTTTTATTCTGCGCGTAATCTCTTGTCCTGAAAACGAAAAAACCACCTGGGGAGGTGGTTTTTCGAAGGTTCAGTAAGTTGGGGAACTTCTGAACCGTGGTAACAGGGTGTACAAGACCGCTGCCACCAAATACGTCCTTTCAGTTTAGCCGTAGTTAGGCTTCAACTTCAAGAACTCTGCACCAGTAATCTCTTGTACACCCCTTTACCAGTGGCTACCGCCAATGGCGATTTGACGTGTCTGTAAGGGTTGGACTCAAGACGATAGTTACCTTACATGGCGCGGTAGTCGGACTGAACGGGGGGTTCGTGCATACAGTCCAGCTTGGAGCGAACTGCCTACCCGGAACTGAGTGTCAGGCGTGGAATGAGACAAACGCGGCCATAACAGCGGAATGACACCGGTAAACCGAATGGCAGGAACAGGAGAGCGCACGAGGGAGCGACCCATCGGAAACGGTGGGGATCTTTAAGTCCTGTCGGGTTTCGTCACCGCTGTCGGATTCATGGTTGAGCTCAGGCTCCCACAGATGCACCGAAAAAGTGTCTGTTTATGAATTCCGGCAGGGGGGCGGAGCCTATGAAAAAACGGCAACGCCGCATCCTTTTTCCGGCCCTTCCTGATTTGAGCACTGCTTGCGTGTCCTGTCATCTGTGAGCCGGTAACGCCCGCCGCAGTCTCACGGCAGGAGCGTAGCGACCGAGTGAGCGAGGAGGCGTCATTTCATCCTTACCTGCATGTTGCACTTACGCCCGGTAGCCGCATTTTTTCCCTTGTCACATGAAGCACTTTCATAAATCACCACTCCGCCGTAACATATTTAGCCAGTATACACTCCGCTAGCGCTACGTGACTGGTTCAGGGCTGCGCCCCGAAACCCGCTAACAACCTCTCCGCTACTGGATATCACCCCATGCCATCTGAATATGATGAACAACGGGATTCGACTGATACGCAGCTTCCCGGCGAATATGACCTTTTTGATTTAATGGCGAAGGTTACTGAAGAGAACCTGCATGCCCCTGTGGATTCTGGGCCGCCTGTCGGCCGGGAAGCGTTATAGCTTTTTTCGCTTGCCCGCGTACGTGGTAATACGCCGGTATTACATCTTATTTCTTTATTTTCATGTGATTACAGATGATTTTAATACTTGCGTATTACCGTAATAAACGGTGCATCCCATTTTTTTTATGTAATTCATGCAGTTGCGATGAAAATCGCGGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTGGTAGGGCGCTCTCCGTAGGTTAAGGGCTATTTGGCTAAAAAGCGTCCTATTCTTTGATGGTCATGCTTGCATGACCATCTGAGCAACCAAAAACTACAGATAAACTACAAAAAACGTTTTGCATTAGTGATGGCAGACTACAAAAAAACTACAAAAACCGTGGCAGACTACTAATAGACTACAAGAAAACTACAGATAAACTACAAAGTAACTACCGGATTACCTCAGATCCGTTCCCTGAACCATTCGTACATCGACCCCCTTCCTGAACGTGCTGAAAACGGGTTTTCCGGCTGCGCCGGCAACGCTTCACGGCCACGCAATAAATTGCGTCCCCGTTCACCGTTTTCGGATGGGAAGAACGCCGGAAACAGGACTTCCCCTGGCTGAATGGTGTCAATTTCCGTGCTATGCACTTGTGCGCATACTCATGCATGCCGTAAAAACAGAGCCTGCGCGTTTCTGGCGGGTTTTCGGGTGGTTTGTTGCCTGTTTTACCGGTTTCCCGTCAGAAACGCCCTCAGAGGCTCTGAGGCGGTGCCGATAAGGGATGTTATGGTAAATGACAACAACCGAAATACTGTCGTGAATGTGATTTTTCGATTGAAAATCACAAAAAAATCAACAAATATCACCTATTCTATCATTCGACGTTAGGGAGGATTAAATGACTATTGAAATTATTATTTTAGCAAACTCAATTAAACATCAGGCTTGTTGTGTTGCAGGAAAAACAATAGCAGGGGAATGGGTTAGAATTGTAGCGGATAGTTCAGGAAAAGAGTTGACAAAAGAGCAAGCCTCAATAACAAACCCTTACGGTACATTCTTAGTAAAACCACTGCAAAAAGTACTGTTAAATCTTACGAAACACGCCCCACTTTTAAATCAACCAGAAAATTATATCAATGATCCAAAATCAGGATGGACTCAGAATTTTAATTTGAAATTTGAAGATCTATCTAAATATACAGACAAACCTAATAGCTTATGGGGTGATAATAATGACAGGATCCCATACGCCGACATAACTAGCAGCAAGATTAAAATAGATAGCTCACTGTATTTAATTGAGGGCAAAAAGGCAACGGCATACTTAAACACATATGGTAAAAGAAGGGTGTCGTTCTCATATAATGGATTACCTAGATTCTACGTCAGTACTTCAAAAAGCATAATCAAAGCCTTGATAAATATGCATTCCTTCGAAATTCAGCTTTCACCCATTGGGTGAAAGAAAAGTGCTCAAAAATATGTTAAATTATCAGCTTTTATGACTCGATATATGGTAAAATAATAGTAAGAAAAGTAGTAAAAAGGGGTTCTAATT

AT-rich region

The information of repeat sequences

Motif ARACTACARAWAAACTACAA

Start	P-value		Site
1448	9.19e-12	TAGTGATGGC	AGACTACAAAAAAACTACAA	AAACCGTGGC
1500	1.92e-11	GACTACAAGA	AAACTACAGATAAACTACAA	AGTAACTACC
1404	1.92e-11	GAGCAACCAA	AAACTACAGATAAACTACAA	AAAACGTTTT
1478	1.70e-10	AAACCGTGGC	AGACTACTAATAGACTACAA	GAAAACTACA
617	1.57e-09	AGGGGGGCGG	AGCCTATGAAAAAACGGCAA	CGCCGCATCC

Motif GHCCYTBCGGRTTTBDGSMCBGCTKTCGG

Start	P-value		Site
1061	1.27e-13	GAACCTGCAT	GCCCCTGTGGATTCTGGGCCGCCTGTCGG	CCGGGAAGCG
515	3.08e-13	GGATCTTTAA	GTCCTGTCGGGTTTCGTCACCGCTGTCGG	ATTCATGGTT
1762	1.58e-12	CGTAAAAACA	GAGCCTGCGCGTTTCTGGCGGGTTTTCGG	GTGGTTTGTT
655	4.21e-12	CCTTTTTCCG	GCCCTTCCTGATTTGAGCACTGCTTGCGT	GTCCTGTCAT

Motif WSMGBCCNGAAASSCSCNMACAGNCTCNCVGSARSWGVVKAKCRVVCGWG

Start	P-value		Site
908	3.24e-20	GGTTCAGGGC	TGCGCCCCGAAACCCGCTAACAACCTCTCCGCTACTGGATATCACCCCAT	GCCATCTGAA
697	1.13e-15	CTGTCATCTG	TGAGCCGGTAACGCCCGCCGCAGTCTCACGGCAGGAGCGTAGCGACCGAG	TGAGCGAGGA
357	1.22e-15	GTTCGTGCAT	ACAGTCCAGCTTGGAGCGAACTGCCTACCCGGAACTGAGTGTCAGGCGTG	GAATGAGACA
1817	3.29e-15	TTTACCGGTT	TCCCGTCAGAAACGCCCTCAGAGGCTCTGAGGCGGTGCCGATAAGGGATG	TTATGGTAAA
431	5.87e-15	CGGCCATAAC	AGCGGAATGACACCGGTAAACCGAATGGCAGGAACAGGAGAGCGCACGAG	GGAGCGACCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000314	100.0	2643	0	0	1	2643	1	2643	0.0	4881
pORI00000075	99.924	2643	2	0	1	2643	1	2643	0.0	4870
pORI00000244	85.387	698	89	11	606	1297	771	1461	0.0	712
pORI00000244	81.31	519	77	16	24	539	240	741	0.0	403
pORI00000098	87.521	593	60	14	694	1280	927	1511	0.0	673
pORI00000098	96.215	317	9	3	1556	1871	1819	2133	0.0	516
pORI00000098	79.159	523	88	16	21	539	295	800	0.0	342
pORI00000095	87.521	593	60	14	694	1280	927	1511	0.0	673
pORI00000095	96.215	317	9	3	1556	1871	1808	2122	0.0	516
pORI00000095	79.159	523	88	16	21	539	295	800	0.0	342
pORI00000094	87.436	589	58	16	699	1280	1171	592	0.0	664
pORI00000094	95.342	322	14	1	1556	1877	338	18	0.0	510
pORI00000094	84.586	519	67	12	27	539	1815	1304	0.0	503
pORI00000238	86.64	509	56	11	27	530	263	764	0.0	553
pORI00000238	90.432	324	29	2	609	932	805	1126	0.0	425
pORI00000060	86.293	518	59	11	27	539	2325	1815	0.0	553
pORI00000060	90.826	327	28	2	606	932	1785	1461	0.0	436
pORI00000334	78.266	934	127	48	27	935	983	101	0.0	531
pORI00000322	78.242	933	129	46	27	935	983	101	0.0	531
pORI00000111	85.549	519	61	12	27	539	52	562	0.0	531
pORI00000093	84.586	519	67	12	27	539	899	388	0.0	503
pORI00000093	81.992	261	37	10	699	955	255	1	0.0	213
pORI00000056	81.467	518	73	18	27	539	3	502	0.0	403
pORI00000198	81.947	493	70	15	56	539	126	608	0.0	399
pORI00000110	81.262	523	73	17	24	539	2169	2673	0.0	399
pORI00000110	80.169	237	35	11	696	927	2802	3031	1.15005e-41	167
pORI00000008	76.73	795	124	46	27	767	1639	852	0.0	387
pORI00000043	90.136	294	28	1	247	539	349	642	0.0	381
pORI00000061	80.62	516	75	20	30	539	168	664	0.0	375
pORI00000061	81.173	324	49	11	606	924	694	1010	0.0	250
pORI00000086	82.222	450	56	21	95	539	882	452	0.0	366
pORI00000086	81.402	328	37	21	609	927	420	108	0.0	246
pORI00000069	80.769	494	69	19	68	539	3135	3624	0.0	363
pORI00000069	83.384	331	47	7	606	932	3654	3980	0.0	300
pORI00000200	79.88	502	87	12	33	530	116	607	0.0	355
pORI00000307	79.159	523	88	16	21	539	295	800	0.0	342
pORI00000307	78.903	237	42	8	694	927	927	1158	8.93e-38	154
pORI00000116	79.159	523	88	16	21	539	295	800	0.0	342
pORI00000116	78.903	237	42	8	694	927	927	1158	8.93e-38	154
pORI00000012	82.353	374	57	9	25	395	68	435	0.0	316
pORI00000436	90.411	219	8	3	1265	1470	403	621	0.0	276
pORI00000436	95.918	49	2	0	1472	1520	644	692	1.54e-15	81
pORI00000240	75.314	636	112	34	27	632	423	1043	0.0	263
pORI00000286	81.271	299	45	10	241	534	509	217	0.0	231
pORI00000284	83.607	122	20	0	418	539	392	271	4.21e-26	115
pORI00000234	83.607	122	20	0	418	539	392	271	4.21e-26	115
pORI00000210	83.607	122	20	0	418	539	392	271	4.21e-26	115
pORI00000209	83.607	122	20	0	418	539	392	271	4.21e-26	115