DoriC

RefSeq

NC_019133

DoriC accession number

pORI00000334

OriC length

1210 nt

OriC AT content

0.4835

The location of oriC region

1866..3075 nt

Browse in NCBI

OriC map

OriC sequences

TTTACTGCGTTTGTCTGCCAATCCAGCCTCCTGATAACGCCGGGACGGGCGGGAAATCTTTTCCCGGTCGGCGCGGTGTTGGACAAGCCGCAGGCGCGTCAGTGGTTTTAGCAGGTTTCGGGGCGCAGCCCTGAACCAGTCACCTAGCGCTAGCGGAGTGTATACTGGCTTAGTATGTTACGGCGAGATGGAGATTCAGGAAAGTGCTTCATGTGAGAGGGGGAAAATGCTGCTGCAGGGAGTAGGTGCGAAATGCCGGTGTCGGTGACATGACGCCTCCTCGCTCACTCGGTCGCTACGCTCCTGCCGTGAGACTGCGGCGGGCGTTACGGGCTTACAGATAACGGGATAGCAAGAAGTCAGGAAAGGCGGAAAAAGGATGCGGCGTTGCCGTTTTTCCATAGGCTTCGCCCTCCTGACGAGCTTCACGGAAATCAGACGATGGCCGGTGCTCAAATCAGAAGGGGCGAAACCTGACAGGACTTAAAGATCCCCACCGTTTCCGATGGGTCGCTCCCTCGTGCGCTCTCCTGTTCCCACCGTGAGGTTTACCCGTTGCAGACCGCCGTAAGGTGGCGTTTTCTCATTCCCTCCCATGCAACTGGGTTCCTGTTAGGTGGTTCGCTCCAAGCTGGACTATATGCACGAACTCCCCGTTTAGTCCGACTACCACGTCCGATCAGGTAACTGTTCTCTTGATTCCAACCCTGACGGACACGACAAATCGCCACTGGCGGTAGCCAACGGTAACTGAATTACGGAGCGGGAAAGTACACAATAGAAAAATCAGAGTTCTTGAAGTGTCACCATAACTACGGCTACACTGGAAGGACAGTTTTGGTTACTGCGCTCCGTAAAAGCCAGTTACCACGGTTAAAAGATCTGCCAGGATCATTTAACCTTCGAAAAACCACCTGCCAGGGTGGTTTTTTCGTTTTGGATAGAAGAGATTACGACGACTAACATATGATCTCAAGAAGATCCTCAACTTAAGACTGTGCCTTTTTCCTTTTGCTATCCGCAGCGCCTTTAGCGCGACAGCCTATCCACCACGTTTGAGGGGCTACGTTACCGCGTAAATTTCTAAAGCCAAATAGAGTTTCAACTTCTTGATAGGTCGAAGCCACGACTGGGTTTAATCGACAATCATAGTCAGCACAATGACATGGATGAGGCAACGCTATTGTATTGCTCATAATTTCTCCTATAT

AT-rich region

The information of repeat sequences

Motif AANHTVHVANGNCWWRAAGAKYYNCMA

Start	P-value		Site
962	4.19e-12	TACGACGACT	AACATATGATCTCAAGAAGATCCTCAA	CTTAAGACTG
471	2.51e-10	GAAGGGGCGA	AACCTGACAGGACTTAAAGATCCCCAC	CGTTTCCGAT
1079	6.66e-10	TTACCGCGTA	AATTTCTAAAGCCAAATAGAGTTTCAA	CTTCTTGATA
783	8.44e-10	ACACAATAGA	AAAATCAGAGTTCTTGAAGTGTCACCA	TAACTACGGC
862	2.60e-09	CCGTAAAAGC	CAGTTACCACGGTTAAAAGATCTGCCA	GGATCATTTA

Motif ACGGTGVCKTTTTCCYDTTGS

Start	P-value		Site
995	6.47e-11	TCAACTTAAG	ACTGTGCCTTTTTCCTTTTGC	TATCCGCAGC
570	1.27e-09	AGACCGCCGT	AAGGTGGCGTTTTCTCATTCC	CTCCCATGCA
920	4.13e-09	ACCACCTGCC	AGGGTGGTTTTTTCGTTTTGG	ATAGAAGAGA
539	6.48e-09	TCCTGTTCCC	ACCGTGAGGTTTACCCGTTGC	AGACCGCCGT
385	1.46e-08	AAAGGATGCG	GCGTTGCCGTTTTTCCATAGG	CTTCGCCCTC

Motif AAATCAGA

Start	P-value		Site
455	1.28e-05	GCCGGTGCTC	AAATCAGA	AGGGGCGAAA
432	1.28e-05	AGCTTCACGG	AAATCAGA	CGATGGCCGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000334	100.0	1210	0	0	1	1210	1	1210	0.0	2235
pORI00000322	99.587	1210	5	0	1	1210	1	1210	0.0	2207
pORI00000069	78.909	972	132	53	6	937	4077	3139	0.0	592
pORI00000200	84.076	628	59	32	364	977	716	116	0.0	568
pORI00000060	78.556	928	140	36	82	985	1435	2327	0.0	556
pORI00000238	78.448	928	140	37	82	985	1152	261	0.0	551
pORI00000314	78.266	934	127	50	104	986	932	24	0.0	531
pORI00000075	78.266	934	127	50	104	986	932	24	0.0	531
pORI00000286	82.899	614	76	28	392	985	145	749	0.0	525
pORI00000086	79.61	770	117	30	6	758	6	752	0.0	516
pORI00000061	78.92	778	123	25	1	758	1121	365	0.0	490
pORI00000110	75.127	985	164	52	8	959	3132	2196	0.0	387
pORI00000244	77.381	672	119	22	104	758	1096	441	0.0	368
pORI00000094	73.312	918	175	52	101	985	937	1817	0.0	274
pORI00000093	73.312	918	175	52	101	985	21	901	0.0	274
pORI00000022	75.127	591	103	31	374	937	629	56	0.0	237
pORI00000008	75.36	556	98	30	459	985	1096	1641	0.0	231
pORI00000008	90.411	73	7	0	254	326	839	911	6.93e-21	97
pORI00000307	72.359	937	183	49	78	985	1189	300	0.0	226
pORI00000116	72.359	937	183	49	78	985	1189	300	0.0	226
pORI00000098	71.789	911	181	49	104	985	1163	300	0.0	189
pORI00000095	71.789	911	181	49	104	985	1163	300	0.0	189
pORI00000012	85.034	147	18	4	791	935	260	116	6.79e-36	147