DoriC

RefSeq

NC_008053

DoriC accession number

pORI00000200

OriC length

1117 nt

OriC AT content

0.487

The location of oriC region

75..1191 nt

Browse in NCBI

OriC map

OriC sequences

ATCAATGGCTTAATTCGTATCGACTATTCTTAGGATACCAGACATACGGTAAAAAAATTAGATGTGGATATGCATGCTTAGTCTAATGAGGGGACTTGTGAGCTAAAAGTATCCCCTTGAGATCCTGTGTTCCTACGCGTAATCTCTTGCTCTGAAAACGAAAAAACCACCCGGCAAGGTGGTTTTTTCGAAGGTTCAGGAAACCGGCAAGTTTCTGAACCTTGGTAACTGTCTTGGAGGAGACGAGTCACCAAATCTGTCCTTCAGTGTAGCCGTAGTTTGCATTGCACTTCAAGAACTCTAAGTCTCATCTCCTCTATCTCTGTTACCAATGGCTACCGCCAGTGGCGTTTTGTCGTGTCTGTCAGGGTTGGATTCAAGAGAGTGTTACCTGGTATGGCGTGGTAGTCGGACTAAACGGGGAGTTCGTGCAGATAGTCCAGCTTGGAGCGAACCACCTACAAGGAACCCAGTTGCGCGGGAAGGAATGAGAAAACGCCACCTTACGGCGGACTGCAACGGGTAAACCTCAGGGTGGGAACAGGAGAGCGCACGAGGGAGCAACCCATCGGAAACGGTGGGGATCTTTAAGTCCTGTCAGGTTTCGCCGCTTCTGATTTGAGCACCGGAAATCTAACTATTTCTGTGAAGCTCATCAGGAGGGCGGAGCCTATGGAAAAACGGCACGGCGTGCCGCGGCCTTTTCCCCGCCTTTCGTTTCCTTGCCACCTTCCTGCTTGTCTTTTTACCCCCACCGCTCGCCGCAGTGTTGACTAGCGTAGTCTGTCAACGCGAGGAAGCGGAAGTGCATCTGAAGCTGATGTCTCGCACGGTCATCGTGGGGCCTCAGTTGACGATGCAAGATAGGCAACGTGTTCCCATTTGACGTCATTTCATTCCTTCAAACGGTTACTCGTAGCTACCCCTGCCGGTGGCTCTCGTGAGGGACAGGGTATGTTTTGTAGCACCGCCGATGGCGGCGCTACAAAACGATCTTTGCGGACAGGAAATGTGTTGTCATTACCGCCGGTGCCCCTGGTTTTGACAACACTCTGGTCAGGGCGTAGCCCCAACACCCCAAATAACCCTTATACTGTGCCAAAAATAGGAGGCCTCT

AT-rich region

The information of repeat sequences

Motif AAYGRRAAAACBNCACGG

Start	P-value		Site
157	6.78e-10	TTGCTCTGAA	AACGAAAAAACCACCCGG	CAAGGTGGTT
672	1.37e-08	GGGCGGAGCC	TATGGAAAAACGGCACGG	CGTGCCGCGG
518	3.93e-08	GGCGGACTGC	AACGGGTAAACCTCAGGG	TGGGAACAGG
487	5.96e-08	CGCGGGAAGG	AATGAGAAAACGCCACCT	TACGGCGGAC
449	5.11e-07	TCCAGCTTGG	AGCGAACCACCTACAAGG	AACCCAGTTG

Motif ACYMCCGCCGGTGGC

Start	P-value		Site
922	3.45e-08	ACTCGTAGCT	ACCCCTGCCGGTGGC	TCTCGTGAGG
964	4.75e-08	TATGTTTTGT	AGCACCGCCGATGGC	GGCGCTACAA
1020	1.16e-07	ATGTGTTGTC	ATTACCGCCGGTGCC	CCTGGTTTTG
335	1.81e-07	GTTACCAATG	GCTACCGCCAGTGGC	GTTTTGTCGT
748	4.07e-07	TTGTCTTTTT	ACCCCCACCGCTCGC	CGCAGTGTTG

Motif ATAMCMSWYATACKGTRMMAAAAWTAG

Start	P-value		Site
35	1.15e-14	TATTCTTAGG	ATACCAGACATACGGTAAAAAAATTAG	ATGTGGATAT
1082	2.53e-14	AACACCCCAA	ATAACCCTTATACTGTGCCAAAAATAG	GAGGCCTCT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000200	100.0	1117	0	0	1	1117	1	1117	0.0	2063
pORI00000334	84.076	628	59	32	116	716	977	364	0.0	568
pORI00000322	84.076	628	59	32	116	716	977	364	0.0	568
pORI00000286	87.55	498	40	18	325	814	502	19	0.0	556
pORI00000286	81.609	174	24	6	106	273	751	580	3.77e-33	137
pORI00000060	78.965	599	96	21	105	691	2330	1750	0.0	381
pORI00000238	79.027	596	94	22	105	688	258	834	0.0	379
pORI00000314	79.88	502	87	12	116	607	33	530	0.0	355
pORI00000075	79.88	502	87	12	116	607	33	530	0.0	355
pORI00000110	77.625	581	96	25	114	685	2176	2731	0.0	322
pORI00000069	76.263	594	92	35	152	716	3136	3709	0.0	270
pORI00000008	74.632	544	95	29	106	609	1643	1103	0.0	200