RefSeq NC_012912.1
Accession number NC_012912.1
DoriC accession number ORI93020094
OriC length 378 nt
OriC AT content 0.584656
The location of oriC region 4727076..4727453 nt
Browse in NCBI
OriC map
OriC sequences
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
miocTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgida
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
mioCTCTGATTTTTTTATCCTCCCCTTGTGGATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCCAAATAACAACGGCGGTTTATTTTTTGAGCTGTGCATAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGATCGACAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGGGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTTCTTTAACTACCCATCGATCCAACACACTTGGTAGACGGTACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TTBRGATCCCVGVTHATHCAC

StartP-valueSite
1905.12e-11TGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATCGG
1134.50e-10TAAGTAGCCTTTCAGATCCCAGCTAATACAGTCTGGGATCA
1352.92e-09CTAATACAGTCTGGGATCACCGATCATTCACAGTTAATGAT
373.12e-09GATAAATAGCTTGAAATGCCGGGTAAAACCCGTAGTTATCC

Motif TCCHCCACNCBWGG

StartP-valueSite
3252.34e-07TTAAGTAGAATCCCCCACCCCAGGGCAAGTAACG
3562.90e-07ACGATCATTCGCAACCACGCGAGGTGTAGCACC
2871.01e-06TACCCATCGATCCAACACACTTGGTAGACGGTAC
141.19e-06GATTTTTTTATCCTCCCCTTGTGGATAAATAGCT

Motif ADWGATCT

StartP-valueSite
2441.63e-05GATCTAATAAAGAGATCTTTAAATAAAA
2311.63e-05GATCCTAATAAGAGATCTAATAAAGAGA
2605.95e-05CTTTAAATAAAAAGATCTTTCTTTAACT
1781.73e-04ACAATAACCTATTGATCTTCTTTTTGGA
1601.89e-04ATTCACAGTTAATGATCGACAATAACCT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI93020094 100.0 378 0 0 1 378 1 378 0.0 699
ORI93020110 92.798 361 24 2 20 378 19 379 0.0 521
ORI94030317 92.157 357 27 1 23 378 357 1 0.0 503
ORI93020092 83.598 378 55 7 5 378 4 378 0.0 348
ORI93020095 80.0 340 57 10 23 357 23 356 0.0 241
ORI92220054 79.272 357 60 14 22 371 25 374 0.0 237
ORI96000435 79.118 340 65 5 23 360 368 33 0.0 230
ORI10030033 79.118 340 66 4 23 360 369 33 0.0 230
ORI96000376 76.524 328 61 13 23 342 26 345 7.28955e-42 165
ORI96000375 76.524 328 61 13 23 342 355 36 7.28955e-42 165
ORI96000374 76.524 328 61 13 23 342 355 36 7.28955e-42 165
ORI93020117 76.524 328 61 13 23 342 355 36 7.28955e-42 165
ORI92520061 76.524 328 61 13 23 342 26 345 7.28955e-42 165
ORI90020045 76.524 328 61 13 23 342 26 345 7.28955e-42 165
ORI80020043 76.308 325 67 10 23 342 355 36 7.28955e-42 165
ORI20020031 76.524 328 61 13 23 342 355 36 7.28955e-42 165
ORI20020030 76.524 328 61 13 23 342 355 36 7.28955e-42 165
ORI10020019 76.524 328 61 13 23 342 355 36 7.28955e-42 165
ORI92220056 75.988 329 61 14 23 342 355 36 1.58e-38 154
ORI92020050 75.915 328 63 13 23 342 355 36 1.58e-38 154
ORI94030361 75.309 324 72 8 23 342 355 36 7.34e-37 148
ORI92320057 75.61 328 64 13 23 342 26 345 7.34e-37 148
ORI10020008 75.684 329 63 14 23 342 356 36 7.34e-37 148
ORI96000406 77.731 238 42 10 58 289 321 89 5.72e-33 135
ORI96000365 77.731 238 42 10 58 289 321 89 5.72e-33 135
ORI96000438 77.366 243 44 10 53 289 53 290 2.06e-32 134
ORI96000437 77.366 243 44 10 53 289 53 290 2.06e-32 134
ORI96000436 77.366 243 44 10 53 289 53 290 2.06e-32 134
ORI96000411 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI94030302 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI94030301 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI92720079 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI92720078 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI92320059 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI92220053 77.366 243 44 10 53 289 326 89 2.06e-32 134
ORI30020034 77.366 243 44 10 53 289 407 170 2.06e-32 134
ORI10030083 77.366 243 44 10 53 289 53 290 2.06e-32 134
ORI96020516 76.744 258 45 12 23 273 286 37 2.66e-31 130
ORI10020018 76.744 258 45 12 23 273 274 25 2.66e-31 130
ORI10030027 76.744 258 45 12 23 273 274 25 2.66e-31 130
ORI96000417 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000416 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000415 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000414 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000409 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000408 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000407 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000405 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000401 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000400 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI96000390 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000387 77.974 227 35 12 51 269 52 271 9.56e-31 128
ORI95030447 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI94030310 75.159 314 56 18 23 325 350 48 9.56e-31 128
ORI93020113 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI93020109 77.974 227 35 12 51 269 52 271 9.56e-31 128
ORI93020102 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI96000367 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI93020098 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI93020096 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI93020093 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI93020090 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI94030303 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI94030298 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI92720080 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI92330207 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI92330196 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI92320058 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI92220052 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI96000364 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI10030036 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI10030030 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI10020002 76.955 243 45 10 53 289 326 89 9.56e-31 128
ORI10020001 76.955 243 45 10 53 289 53 290 9.56e-31 128
ORI96000410 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI96000404 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI96000402 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI96000368 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI94030299 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI50020036 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI30020033 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI10020028 76.891 238 44 10 58 289 321 89 1.24e-29 124
ORI96000422 76.543 243 46 10 53 289 326 89 4.45e-29 122
ORI93020104 76.543 243 45 11 53 289 325 89 4.45e-29 122
ORI93020103 76.543 243 45 11 53 289 53 289 4.45e-29 122
ORI93020099 76.543 243 46 10 53 289 326 89 4.45e-29 122
ORI92720076 76.543 243 46 10 53 289 326 89 4.45e-29 122
ORI10030084 76.543 243 46 10 53 289 53 290 4.45e-29 122
ORI10030070 76.543 243 46 10 53 289 53 290 4.45e-29 122
ORI10020005 76.543 243 46 10 53 289 326 89 4.45e-29 122
ORI10020004 76.543 243 46 10 53 289 326 89 4.45e-29 122
ORI96000413 76.856 229 43 9 58 280 321 97 1.6e-28 121
ORI96000412 76.856 229 43 9 58 280 321 97 1.6e-28 121
ORI96000403 76.856 229 43 9 58 280 321 97 1.6e-28 121
ORI10020012 76.856 229 43 9 58 280 321 97 1.6e-28 121
ORI93020091 76.889 225 41 10 51 269 52 271 2.07e-27 117
ORI94030300 76.132 243 47 10 53 289 326 89 2.07e-27 117
ORI96020517 74.803 254 57 7 23 273 26 275 1.25e-24 108
ORI93020097 82.4 125 19 3 202 325 174 52 4.48e-24 106
ORI10030090 76.331 169 31 7 116 280 105 268 7.55e-17 82