RefSeq NC_009832.1
Accession number NC_009832.1
DoriC accession number ORI92220054
OriC length 381 nt
OriC AT content 0.590551
The location of oriC region 5445749..5446129 nt
Browse in NCBI
OriC map
OriC sequences
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
miocTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgida
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
mioCTTTGTTCAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGTTATCCCAATAACAACCTTAGGTCGCTTTTTGTCCTGTGCATAACATGCCATTTAGATCCCAGCTTATAAGCCATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGCGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAACTTGAGTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTCCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif CYDMTCNWNNGHAGAYAACGATCCTNMNHAVTDVGNYRA

StartP-valueSite
1473.30e-14CATAGGATCACCGATCATTCACAGCTAACGATCCTCCTTAATTAGCTGATCTCAATCGC
3321.04e-12GTAGAATCCACCACCCCAGGGCAAACAACGATCGTTCGCAATACGACGAGGTGCAGTTC
171.77e-12CAAAGATCACCCGAACGATTGTGGATAACTATGCTTAAAAGCAGGGTAAAACCGGTAGT
2054.33e-12CGAATAATCACTTATCCACAGAAGATCGCGATCCTAATAAGAGATCTAATAAAGAGATC
2692.45e-11ATAAAAAGATCTTCTTTTAATTACTCAAGGATCCTGACCACTTGGTCGATCGACTAAAC

Motif CCWTAGG

StartP-valueSite
803.81e-05CCAATAACAACCTTAGGTCGCTTTTTG
1368.49e-05AGCTTATAAGCCATAGGATCACCGATC

Motif KGTGCA

StartP-valueSite
3711.03e-04AATACGACGAGGTGCAGTTCC
1002.62e-04CTTTTTGTCCTGTGCATAACATGCCA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92220054 100.0 381 0 0 1 381 1 381 0.0 704
ORI10020019 86.614 381 40 8 6 381 375 1 0.0 411
ORI96000376 86.508 378 40 8 6 378 6 377 0.0 405
ORI96000375 86.352 381 41 8 6 381 375 1 0.0 405
ORI96000374 86.352 381 41 8 6 381 375 1 0.0 405
ORI93020117 86.352 381 41 8 6 381 375 1 0.0 405
ORI92520061 86.508 378 40 8 6 378 6 377 0.0 405
ORI92020050 86.387 382 39 10 6 381 375 1 0.0 405
ORI90020045 86.508 378 40 8 6 378 6 377 0.0 405
ORI20020031 86.352 381 41 8 6 381 375 1 0.0 405
ORI20020030 86.352 381 41 8 6 381 375 1 0.0 405
ORI80020043 85.901 383 49 5 1 381 380 1 0.0 403
ORI92320057 86.28 379 39 10 6 378 6 377 0.0 399
ORI10020008 85.864 382 42 9 6 381 376 1 0.0 396
ORI92220056 85.564 381 44 8 6 381 375 1 0.0 388
ORI94030361 85.156 384 50 7 1 381 380 1 0.0 387
ORI96020516 86.774 310 31 7 6 310 306 2 0.0 337
ORI10020018 88.129 278 29 4 6 281 294 19 0.0 327
ORI10030027 88.129 278 29 4 6 281 294 19 0.0 327
ORI96020517 84.984 313 41 6 1 310 1 310 0.0 313
ORI10030033 83.918 342 40 15 26 360 369 36 0.0 313
ORI93020095 82.997 347 40 19 23 360 20 356 0.0 296
ORI96000435 82.749 342 43 16 26 360 368 36 0.0 291
ORI93020094 79.213 356 62 12 25 374 22 371 0.0 237
ORI95030439 79.121 364 55 20 26 378 23 376 0.0 231
ORI96000370 78.904 365 54 22 26 378 23 376 0.0 226
ORI94030349 78.904 365 54 22 26 378 23 376 0.0 226
ORI94030317 78.333 360 63 15 26 377 357 5 0.0 219
ORI96000391 79.487 312 54 10 26 332 356 50 0.0 213
ORI93020110 78.273 359 59 18 26 374 23 372 0.0 213
ORI93030282 79.43 316 46 17 24 330 351 46 0.0 206
ORI93020116 79.048 315 50 16 26 332 355 49 0.0 202
ORI93020115 79.048 315 50 16 26 332 355 49 0.0 202
ORI94030310 79.233 313 45 18 26 328 350 48 0.0 200
ORI93020097 82.328 232 36 5 99 328 280 52 0.0 196
ORI96000387 77.65 349 52 22 26 357 24 363 0.0 189
ORI93020109 77.65 349 52 22 26 357 24 363 0.0 189
ORI93020092 76.796 362 67 17 26 378 22 375 0.0 187
ORI96000423 76.292 329 59 17 26 345 17 335 1.23e-39 158
ORI93020091 75.214 351 63 20 23 357 21 363 9.58e-36 145