DoriC

RefSeq

NC_012779.1

Accession number

NC_012779.1

DoriC accession number

ORI93020091

OriC length

396 nt

OriC AT content

0.603535

The location of oriC region

3780724..3781119 nt

Browse in NCBI

OriC map

OriC sequences

mioCGTATGTTTTTTGCCCACTTAGACTGTGTATAAGTCTTTTTATAAGCAGTAAAAAACCGGTAGTTATTCAAATAATAAACCAGTGCTGTTTTTACACCTGTGTATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTTAATGATCCTGCATAGTAACTTGATCCTTATTGATAAATTCGTGTTATCCACAAAGGATCAGGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCGCGATCCACATAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTCAGCGCGAGGTGTAGTACCgidA

miocGTATGTTTTTTGCCCACTTAGACTGTGTATAAGTCTTTTTATAAGCAGTAAAAAACCGGTAGTTATTCAAATAATAAACCAGTGCTGTTTTTACACCTGTGTATAACAACCAATAAAGATCCCAGCTTTTACGGTCTGGGATCACCGATCTTCCACAGTTAATGATCCTGCATAGTAACTTGATCCTTATTGATAAATTCGTGTTATCCACAAAGGATCAGGATCCTAATAGAAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTTAAATACTGGGCGGAGGATCCGCGATCCACATAGGTTGGACCTGCGCCTAAACTTGAGTAGAATCCCCACCCCTAGGCAAATAACGATCGTTGAGAGCCTTTCGGTCAGCGCGAGGTGTAGTACCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GATCYT

Start	P-value		Site
222	2.12e-04	AAAGGATCAG	GATCCT	AATAGAAGAT
182	2.12e-04	ATAGTAACTT	GATCCT	TATTGATAAA
164	2.12e-04	CACAGTTAAT	GATCCT	GCATAGTAAC
265	5.11e-04	AAATAAAAAA	GATCTT	TTAAATACTG
248	5.11e-04	CTAATAAAGA	GATCTT	TAAATAAAAA

Motif GGATCHGCG

Start	P-value		Site
287	2.67e-06	ACTGGGCGGA	GGATCCGCG	ATCCACATAG
139	1.11e-05	TTACGGTCTG	GGATCACCG	ATCTTCCACA
309	1.38e-05	CACATAGGTT	GGACCTGCG	CCTAAACTTG
374	2.19e-05	GAGAGCCTTT	CGGTCAGCG	CGAGGTGTAG

Motif CTKTKTATAAS

Start	P-value		Site
23	3.12e-07	CCCACTTAGA	CTGTGTATAAG	TCTTTTTATA
97	6.44e-07	GTTTTTACAC	CTGTGTATAAC	AACCAATAAA
35	3.30e-06	GTGTATAAGT	CTTTTTATAAG	CAGTAAAAAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI93020091	100.0	396	0	0	1	396	1	396	0.0	732
ORI96000387	94.71	397	19	2	1	396	1	396	0.0	616
ORI93020109	94.71	397	19	2	1	396	1	396	0.0	616
ORI92220054	75.072	349	67	17	21	363	23	357	9.97e-36	145
ORI94030317	75.938	320	54	21	52	363	329	25	3.59e-35	143
ORI93020095	75.776	322	50	22	51	363	51	353	1.67e-33	137
ORI93020116	80.447	179	27	7	96	270	283	109	2.79e-31	130
ORI93020115	80.447	179	27	7	96	270	283	109	2.79e-31	130
ORI10030033	75.312	320	54	18	52	363	341	39	2.79e-31	130
ORI94030310	82.166	157	21	7	117	270	257	105	1e-30	128
ORI94030361	79.888	179	31	5	94	270	285	110	3.61e-30	126
ORI96000435	75.078	321	53	20	51	363	340	39	1.3e-29	124
ORI96000391	79.775	178	30	5	96	270	284	110	1.3e-29	124
ORI93020110	77.729	229	33	15	52	271	51	270	1.3e-29	124
ORI92520062	79.888	179	28	6	96	270	283	109	1.3e-29	124
ORI96020517	79.33	179	32	5	94	270	96	271	1.68e-28	121
ORI93020094	76.889	225	41	9	52	271	51	269	2.17e-27	117
ORI80020043	79.213	178	30	7	96	270	283	110	2.17e-27	117
ORI93020097	78.531	177	31	5	97	270	280	108	3.64e-25	110
ORI93020092	76.106	226	42	8	52	271	50	269	1.31e-24	108
ORI92020050	75.285	263	45	16	96	352	283	35	1.31e-24	108
ORI92520061	74.905	263	46	16	96	352	98	346	6.09e-23	102
ORI10020019	74.905	263	46	16	96	352	283	35	6.09e-23	102
ORI96000376	74.809	262	46	16	97	352	99	346	2.19e-22	100
ORI96000375	74.809	262	46	16	97	352	282	35	2.19e-22	100
ORI96000374	74.809	262	46	16	97	352	282	35	2.19e-22	100
ORI93020117	74.809	262	46	16	97	352	282	35	2.19e-22	100
ORI90020045	74.809	262	46	16	97	352	99	346	2.19e-22	100
ORI20020031	74.809	262	46	16	97	352	282	35	2.19e-22	100
ORI20020030	74.809	262	46	16	97	352	282	35	2.19e-22	100
ORI96020516	77.273	176	35	5	97	270	213	41	7.88e-22	99
ORI92220056	74.713	261	46	16	98	352	281	35	7.88e-22	99
ORI10020018	77.273	176	35	5	97	270	201	29	7.88e-22	99
ORI10030027	77.273	176	35	5	97	270	201	29	7.88e-22	99