DoriC

RefSeq

NC_013592.1

Accession number

NC_013592.1

DoriC accession number

ORI93020110

OriC length

379 nt

OriC AT content

0.577836

The location of oriC region

4747164..4747542 nt

Browse in NCBI

OriC map

OriC sequences

mioCAATTATTTTTTTCACGAACCTCTGTGGATAAATGGCTTGATATGCCGGGTAAAACCCGTAGTTATCCAGATAACAACTACAGATGCTTTTTTGAGCTGTGTATAATTACCCTTTCAGATCCCAGCTAATACAGACTGGGATCACCGATCATTCACAGCTAATGATCGGCAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATGCCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTCTTTAACTACCCGACGATCCAACAGACTTGGTCGGCGGCACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgidA

miocAATTATTTTTTTCACGAACCTCTGTGGATAAATGGCTTGATATGCCGGGTAAAACCCGTAGTTATCCAGATAACAACTACAGATGCTTTTTTGAGCTGTGTATAATTACCCTTTCAGATCCCAGCTAATACAGACTGGGATCACCGATCATTCACAGCTAATGATCGGCAATAACCTATTGATCTTCTTTTTGGATCCCGGCTTATCCACAGCACATGCCGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTCTTTAACTACCCGACGATCCAACAGACTTGGTCGGCGGCACAAACTTAAGTAGAATCCCCCACCCCAGGGCAAGTAACGATCATTCGCAACCACGCGAGGTGTAGCACCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTBRGATCCCVGVTHATHCAC

Start	P-value		Site
190	4.14e-11	TGATCTTCTT	TTTGGATCCCGGCTTATCCAC	AGCACATGCC
113	4.87e-10	TAATTACCCT	TTCAGATCCCAGCTAATACAG	ACTGGGATCA
135	3.11e-09	CTAATACAGA	CTGGGATCACCGATCATTCAC	AGCTAATGAT
37	3.11e-09	GATAAATGGC	TTGATATGCCGGGTAAAACCC	GTAGTTATCC

Motif ADWGATCT

Start	P-value		Site
244	1.64e-05	GATCTAATAA	AGAGATCT	TTAAATAAAA
231	1.64e-05	GATCCTAATA	AGAGATCT	AATAAAGAGA
261	5.91e-05	TTTAAATAAA	AAAGATCT	TTCTTTAACT
178	1.51e-04	GCAATAACCT	ATTGATCT	TCTTTTTGGA
160	1.86e-04	ATTCACAGCT	AATGATCG	GCAATAACCT

Motif CYACSCSASG

Start	P-value		Site
361	8.15e-07	TCATTCGCAA	CCACGCGAGG	TGTAGCACC
330	2.63e-06	GTAGAATCCC	CCACCCCAGG	GCAAGTAACG
277	5.38e-06	CTTTCTTTAA	CTACCCGACG	ATCCAACAGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI93020110	100.0	379	0	0	1	379	1	379	0.0	701
ORI94030317	94.722	360	17	2	21	379	359	1	0.0	558
ORI93020094	92.798	361	24	2	19	379	20	378	0.0	521
ORI93020092	85.475	358	52	0	22	379	21	378	0.0	374
ORI10030033	80.758	343	56	9	23	361	369	33	0.0	259
ORI93020095	80.702	342	52	12	23	358	23	356	0.0	254
ORI96000435	79.942	344	56	12	23	361	368	33	0.0	241
ORI92220054	78.333	360	57	20	23	372	26	374	0.0	213
ORI92020050	76.821	302	59	11	47	343	331	36	3.4e-40	159
ORI92230170	77.551	294	43	19	53	335	326	45	4.4e-39	156
ORI94030361	75.841	327	66	13	23	343	355	36	1.58e-38	154
ORI80020043	76.061	330	60	19	23	343	355	36	1.58e-38	154
ORI96000376	75.684	329	63	15	23	343	26	345	7.36e-37	148
ORI96000375	76.238	303	59	12	47	343	331	36	7.36e-37	148
ORI96000374	76.238	303	59	12	47	343	331	36	7.36e-37	148
ORI93020117	76.238	303	59	12	47	343	331	36	7.36e-37	148
ORI92520061	75.61	328	65	14	23	343	26	345	7.36e-37	148
ORI90020045	75.684	329	63	15	23	343	26	345	7.36e-37	148
ORI20020031	76.238	303	59	12	47	343	331	36	7.36e-37	148
ORI20020030	76.238	303	59	12	47	343	331	36	7.36e-37	148
ORI10020019	76.159	302	61	11	47	343	331	36	7.36e-37	148
ORI93030277	79.904	209	30	12	88	290	88	290	3.43e-35	143
ORI92220056	75.908	303	60	12	47	343	331	36	3.43e-35	143
ORI10020008	75.329	304	61	13	47	343	332	36	2.06e-32	134
ORI93020091	77.729	229	33	15	51	270	52	271	1.24e-29	124
ORI96000387	74.922	319	53	24	51	352	52	360	1.6e-28	121
ORI93020109	74.922	319	53	24	51	352	52	360	1.6e-28	121
ORI94030310	77.273	220	38	9	112	326	260	48	5.77e-28	119
ORI96020516	76.293	232	45	9	47	274	262	37	7.47e-27	115
ORI10020018	76.293	232	45	9	47	274	250	25	7.47e-27	115
ORI10030027	76.293	232	45	9	47	274	250	25	7.47e-27	115
ORI96020517	74.216	287	63	11	23	304	26	306	3.47e-25	110
ORI93020097	80.8	125	22	2	202	326	174	52	2.7e-21	97