DoriC

RefSeq

NC_012880.1

Accession number

NC_012880.1

DoriC accession number

ORI93020092

OriC length

378 nt

OriC AT content

0.566138

The location of oriC region

4621562..4621939 nt

Browse in NCBI

OriC map

OriC sequences

mioCAAAATATTTTTTCGCTCTCCCTGTGGATAAATCTTTTAAGATCACGGGTAAAACCAGTAGTTATCCAAATGATAACTGCTGTTCGTTTTTTGAGTTGTGCATAATCACCGATTCTGATCCCAGCTTATACGGGCTGGGATCACCGATCATTCACAGAGAGTGATCGGTTTTAACTCATTGATCTTCATTCCGGATCCCGCGTTATCCACAGCAAGGGACGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTCTTTAACTACCCGACGATCCTACAGGGTTGGTCGCCGGTTCAAACTCAAGTAGAATCCCCCACCCCAGGGCGAGTAACGATCATTCGCAACCACGCGAGGTGCAGTACCgidA

miocAAAATATTTTTTCGCTCTCCCTGTGGATAAATCTTTTAAGATCACGGGTAAAACCAGTAGTTATCCAAATGATAACTGCTGTTCGTTTTTTGAGTTGTGCATAATCACCGATTCTGATCCCAGCTTATACGGGCTGGGATCACCGATCATTCACAGAGAGTGATCGGTTTTAACTCATTGATCTTCATTCCGGATCCCGCGTTATCCACAGCAAGGGACGATCCTAATAAGAGATCTAATAAAGAGATCTTTAAATAAAAAAGATCTTTCTTTAACTACCCGACGATCCTACAGGGTTGGTCGCCGGTTCAAACTCAAGTAGAATCCCCCACCCCAGGGCGAGTAACGATCATTCGCAACCACGCGAGGTGCAGTACCgida

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GATCVCVGGT

Start	P-value		Site
40	1.51e-06	AATCTTTTAA	GATCACGGGT	AAAACCAGTA
299	1.07e-05	CTACAGGGTT	GGTCGCCGGT	TCAAACTCAA
193	1.07e-05	CTTCATTCCG	GATCCCGCGT	TATCCACAGC
138	1.50e-05	TACGGGCTGG	GATCACCGAT	CATTCACAGA
116	2.06e-05	CACCGATTCT	GATCCCAGCT	TATACGGGCT

Motif GATCYT

Start	P-value		Site
263	2.86e-04	AAATAAAAAA	GATCTT	TCTTTAACTA
246	2.86e-04	CTAATAAAGA	GATCTT	TAAATAAAAA
180	2.86e-04	TTAACTCATT	GATCTT	CATTCCGGAT
285	5.31e-04	ACTACCCGAC	GATCCT	ACAGGGTTGG
220	5.31e-04	AGCAAGGGAC	GATCCT	AATAAGAGAT

Motif CCACSCSAGGKSSAGTA

Start	P-value		Site
360	3.06e-10	TCATTCGCAA	CCACGCGAGGTGCAGTA	CC
329	4.01e-10	GTAGAATCCC	CCACCCCAGGGCGAGTA	ACGATCATTC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI93020092	100.0	378	0	0	1	378	1	378	0.0	699
ORI94030317	85.833	360	47	4	21	378	358	1	0.0	379
ORI93020110	85.475	358	52	0	21	378	22	379	0.0	374
ORI93020094	83.598	378	55	7	4	378	5	378	0.0	348
ORI10030033	79.651	344	58	12	22	360	369	33	0.0	237
ORI93020095	78.413	315	56	9	48	357	49	356	0.0	195
ORI92220054	76.796	362	67	17	22	375	26	378	0.0	187
ORI96000435	77.168	346	62	14	22	360	368	33	0.0	185
ORI80020043	77.586	290	49	16	96	378	281	1	9.43004e-41	161
ORI94030361	77.491	271	43	14	116	378	261	1	2.64e-36	147
ORI96000376	74.221	353	68	20	36	378	41	380	3.44e-30	126
ORI96000375	74.221	353	68	20	36	378	340	1	3.44e-30	126
ORI96000374	74.221	353	68	20	36	378	340	1	3.44e-30	126
ORI93020117	74.221	353	68	20	36	378	340	1	3.44e-30	126
ORI90020045	74.221	353	68	20	36	378	41	380	3.44e-30	126
ORI20020031	74.221	353	68	20	36	378	340	1	3.44e-30	126
ORI20020030	74.221	353	68	20	36	378	340	1	3.44e-30	126
ORI96000387	77.533	227	37	11	50	269	52	271	1.24e-29	124
ORI93020109	77.533	227	37	11	50	269	52	271	1.24e-29	124
ORI92520061	75.258	291	54	15	96	378	100	380	4.45e-29	122
ORI10020019	75.258	291	54	15	96	378	281	1	4.45e-29	122
ORI92220056	73.938	353	69	20	36	378	340	1	1.6e-28	121
ORI92020050	75.556	270	50	13	116	378	261	1	5.76e-28	119
ORI10020008	73.446	354	70	21	36	378	341	1	9.63e-26	111
ORI93020091	76.106	226	42	8	50	269	52	271	1.25e-24	108
ORI96020517	77.32	194	31	11	116	303	120	306	5.8e-23	102
ORI96020516	74.525	263	50	15	36	291	271	19	7.5e-22	99
ORI10020018	74.525	263	50	15	36	291	259	7	7.5e-22	99
ORI10030027	74.525	263	50	15	36	291	259	7	7.5e-22	99
ORI94030310	75.349	215	42	10	116	325	256	48	3.49e-20	94
ORI93020097	75.51	196	40	8	96	288	279	89	4.51e-19	90